WMU28722 (transcribed_cluster) Watermelon (97103) v1

NameWMU28722
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSerine-rich protein
LocationChr9 : 1557700 .. 1558069 (-)
Sequence length373
The following sequences are available for this feature:

transcribed_cluster sequence

CTCCCTTTCATTTCTACTTATAGCCATTAAAAACCGTCTTAAAAAACAAAAAACAAAAGAAAAAAAAAGAATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTACCTTTGAATATGTGTATAAATTCATATATACACAAAATTTATATATAGGTGAAATATATGTAC
BLAST of WMU28722 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 23/41 (56.10%), Postives = 26/41 (63.41%), Query Frame = 2

Query: 140 VAPAQEVVRQQKSGGDGGGNK--CICSPTTHPGSFRCRFHQ 199
           VA   E     +SGGDGGG K  C+CSP+ HP SF+CR+HQ
Sbjct: 27  VATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQ 67

Query: 200 257
           
Sbjct: 87  67

BLAST of WMU28722 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 50.4 bits (119), Expect = 9.0e-07
Identity = 21/48 (43.75%), Postives = 28/48 (58.33%), Query Frame = 2

Query: 164 RQQKSGGDGGGN-----------KCICSPTTHPGSFRCRFHQKRL*MG 223
           R ++ GG GGG+            C+C+PTTHPGSFRCR+H++   +G
Sbjct: 41  RVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLG 88

Query: 224 275
           
Sbjct: 101 88

BLAST of WMU28722 vs. TrEMBL
Match: A0A0A0KAE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-17
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 2

Query: 71  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRF 130
           MCYP +P HR TAF FA  GR +VA  +E VRQQ+S   GGG KCICSPTTHPGSF+CRF
Sbjct: 1   MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRS---GGGYKCICSPTTHPGSFKCRF 59

Query: 131 HQ 190
           HQ
Sbjct: 61  HQ 59

Query: 191 250
           
Sbjct: 121 59

Query: 251 257
           
Sbjct: 181 59

BLAST of WMU28722 vs. NCBI nr
Match: gi|700190124|gb|KGN45357.1| (hypothetical protein Csa_7G446750 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 2

Query: 71  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRF 130
           MCYP +P HR TAF FA  GR +VA  +E VRQQ+S   GGG KCICSPTTHPGSF+CRF
Sbjct: 1   MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRS---GGGYKCICSPTTHPGSFKCRF 59

Query: 131 HQ 190
           HQ
Sbjct: 61  HQ 59

Query: 191 250
           
Sbjct: 121 59

Query: 251 257
           
Sbjct: 181 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G52342.11.4e-0756.10 unknown protein[more]
AT3G13227.19.0e-0743.75 serine-rich protein-related[more]
Match NameE-valueIdentityDescription
A0A0A0KAE1_CUCSA3.7e-1769.35Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700190124|gb|KGN45357.1|1.8e-1769.35hypothetical protein Csa_7G446750 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla015434Cla015434gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0131648S2_0131648EST
S4_0096223S4_0096223EST
S4_0096767S4_0096767EST
S4_0113022S4_0113022EST
S4_0168492S4_0168492EST