CSPI07G21300 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G21300
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionserine-rich protein-related
LocationChr7 : 18266873 .. 18267103 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

mRNA sequence

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

Coding sequence (CDS)

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA
Homology
[Close]
BLAST of CSPI07G21300 vs. TrEMBL
Match: A0A0A0KAE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKT 76
          DYKWVSRSTTSKAKT
Sbjct: 61 DYKWVSRSTTSKAKT 75

[Close]
BLAST of CSPI07G21300 vs. TrEMBL
Match: D7KJG0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474355 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]
BLAST of CSPI07G21300 vs. TrEMBL
Match: A0A078EN61_BRANA (BnaA08g01490D protein OS=Brassica napus GN=BnaA08g01490D PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-07
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1 

Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGY--KCICSPTTHP 60
          MCY        P   FH     +  + G +V   V   V + R GGG   KC+CSP+THP
Sbjct: 1  MCYKKIIPLVIPPESFHE----NVPAAGVTVATEVVATVGRHRDGGGEKKKCVCSPSTHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSK 73
           SFKCR+H  +Y+WV  S+  K
Sbjct: 61 RSFKCRYHHHEYQWVPSSSLHK 78

[Close]
BLAST of CSPI07G21300 vs. TrEMBL
Match: R0GN87_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010773mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-07
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGR-----SVVAAVE-EAVRQQRSGGG---YKCICSPTTHPG 60
          MCY  L  H     SF  +       +VV  VE EA    R+GGG    KC+CSP+ HP 
Sbjct: 1  MCYKILLPHVIHPESFQENTPVMAEVTVVTEVEVEATVGNRNGGGGGKKKCVCSPSKHPR 60

Query: 61 SFKCRFHQGDYKWVSRSTTSKA 74
          SFKCR+HQ +Y+W+  S++S +
Sbjct: 61 SFKCRYHQHEYQWIPLSSSSSS 82

[Close]
BLAST of CSPI07G21300 vs. TrEMBL
Match: M1A3Y9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005605 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGRSV-VAAVEEAVRQQRSGGG--YKCICSPTTHPGSFKCRF 60
          MCY  +P+        A  GR + +   + ++R   S     ++C+CSPT HPGSF+CR 
Sbjct: 1  MCYSEVPYWDGNLDKRAHRGRYLSLVQAQVSIRGADSAETKKFECVCSPTIHPGSFRCRH 60

Query: 61 HQGDYKWVSR 68
          H+ DYKWV+R
Sbjct: 61 HRADYKWVAR 70

[Close]
BLAST of CSPI07G21300 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-10
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 1 

Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T  +  +    V A           GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSTTSKAKT 76
          FKCR+HQ +Y+W+  S++S + +
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSS 83

[Close]
BLAST of CSPI07G21300 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.7e-06
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 1 

Query: 18 SHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH  S V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]
BLAST of CSPI07G21300 vs. NCBI nr
Match: gi|700190124|gb|KGN45357.1| (hypothetical protein Csa_7G446750 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKT 76
          DYKWVSRSTTSKAKT
Sbjct: 61 DYKWVSRSTTSKAKT 75

[Close]
BLAST of CSPI07G21300 vs. NCBI nr
Match: gi|727438966|ref|XP_010500835.1| (PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1  MCYPTLP---------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYK-CICSPTTHP 60
          MCY  LP         FH  T  +  +   +V + VE     +  GGG K C+CSP+ HP
Sbjct: 1  MCYKILPPLVVIPSGSFHENTPVAEVTTVATVKSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKT 76
           SFKCR+HQ +Y+W+  S++S + +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSS 85

[Close]
BLAST of CSPI07G21300 vs. NCBI nr
Match: gi|297852990|ref|XP_002894376.1| (hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]
BLAST of CSPI07G21300 vs. NCBI nr
Match: gi|727615045|ref|XP_010479743.1| (PREDICTED: uncharacterized protein LOC104758556 [Camelina sativa])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG--YKCICSPTTHP 60
          MCY  LP        FH  T  +  +   +V  +  E     R+GGG   KC+CSP+ HP
Sbjct: 1  MCYKILPPLVIPSGSFHENTPVAEVT---TVATSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKT 76
           SFKCR+HQ +Y+W+  S++S + +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSS 82

[Close]
BLAST of CSPI07G21300 vs. NCBI nr
Match: gi|727578772|ref|XP_010462072.1| (PREDICTED: uncharacterized protein LOC104742739 [Camelina sativa])

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG--YKCICSPTTHP 60
          MCY  LP        FH  T  +  +   +V  +  E     R+GGG   KC+CSP+ HP
Sbjct: 1  MCYKILPPLVTPSGSFHENTPVAEVT---TVATSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKA 74
           SFKCR+HQ +Y+W+  S++S +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSS 80

The following BLAST results are available for this feature:
BLAST of CSPI07G21300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G21300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAE1_CUCSA3.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1[more]
D7KJG0_ARALL3.3e-0845.12Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A078EN61_BRANA6.2e-0740.24BnaA08g01490D protein OS=Brassica napus GN=BnaA08g01490D PE=4 SV=1[more]
R0GN87_9BRAS8.1e-0742.68Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010773mg PE=4 SV=1[more]
M1A3Y9_SOLTU1.1e-0640.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005605 PE=4 SV=1[more]
BLAST of CSPI07G21300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52342.17.0e-1034.94 unknown protein[more]
AT1G67910.14.7e-0647.62 unknown protein[more]
BLAST of CSPI07G21300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190124|gb|KGN45357.1|4.4e-38100.00hypothetical protein Csa_7G446750 [Cucumis sativus][more]
gi|727438966|ref|XP_010500835.1|3.6e-0837.65PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa][more]
gi|297852990|ref|XP_002894376.1|4.7e-0845.12hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata][more]
gi|727615045|ref|XP_010479743.1|3.1e-0737.65PREDICTED: uncharacterized protein LOC104758556 [Camelina sativa][more]
gi|727578772|ref|XP_010462072.1|4.0e-0738.55PREDICTED: uncharacterized protein LOC104742739 [Camelina sativa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G21300.1CSPI07G21300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G21300Cla015434Watermelon (97103) v1cpiwmB585
CSPI07G21300MELO3C024233Melon (DHL92) v3.5.1cpimeB525
CSPI07G21300MELO3C024233.2Melon (DHL92) v3.6.1cpimedB512
CSPI07G21300Cla97C09G164260Watermelon (97103) v2cpiwmbB596
CSPI07G21300Cucsa.359030Cucumber (Gy14) v1cgycpiB535
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G21300Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G21300Bottle gourd (USVL1VR-Ls)cpilsiB546
CSPI07G21300Melon (DHL92) v3.6.1cpimedB545
CSPI07G21300Cucumber (Gy14) v2cgybcpiB156
CSPI07G21300Cucumber (Gy14) v2cgybcpiB331
CSPI07G21300Silver-seed gourdcarcpiB0045
CSPI07G21300Silver-seed gourdcarcpiB0135
CSPI07G21300Silver-seed gourdcarcpiB0146
CSPI07G21300Silver-seed gourdcarcpiB0236
CSPI07G21300Silver-seed gourdcarcpiB0780
CSPI07G21300Silver-seed gourdcarcpiB1064
CSPI07G21300Cucumber (Chinese Long) v3cpicucB399
CSPI07G21300Cucumber (Chinese Long) v3cpicucB414
CSPI07G21300Watermelon (97103) v2cpiwmbB575
CSPI07G21300Wax gourdcpiwgoB670
CSPI07G21300Wax gourdcpiwgoB702
CSPI07G21300Wax gourdcpiwgoB724
CSPI07G21300Cucurbita maxima (Rimu)cmacpiB080
CSPI07G21300Cucurbita maxima (Rimu)cmacpiB147
CSPI07G21300Cucurbita maxima (Rimu)cmacpiB279
CSPI07G21300Cucurbita maxima (Rimu)cmacpiB392
CSPI07G21300Cucurbita maxima (Rimu)cmacpiB501
CSPI07G21300Cucurbita maxima (Rimu)cmacpiB935
CSPI07G21300Cucurbita moschata (Rifu)cmocpiB074
CSPI07G21300Cucurbita moschata (Rifu)cmocpiB135
CSPI07G21300Cucurbita moschata (Rifu)cmocpiB268
CSPI07G21300Cucurbita moschata (Rifu)cmocpiB381
CSPI07G21300Cucurbita moschata (Rifu)cmocpiB493
CSPI07G21300Cucurbita moschata (Rifu)cmocpiB914
CSPI07G21300Cucumber (Chinese Long) v2cpicuB354
CSPI07G21300Melon (DHL92) v3.5.1cpimeB560
CSPI07G21300Watermelon (Charleston Gray)cpiwcgB553
CSPI07G21300Watermelon (Charleston Gray)cpiwcgB594
CSPI07G21300Watermelon (97103) v1cpiwmB605
CSPI07G21300Cucurbita pepo (Zucchini)cpecpiB163
CSPI07G21300Cucurbita pepo (Zucchini)cpecpiB346
CSPI07G21300Cucurbita pepo (Zucchini)cpecpiB376
CSPI07G21300Cucurbita pepo (Zucchini)cpecpiB589
CSPI07G21300Cucurbita pepo (Zucchini)cpecpiB702