Cla97C09G164260 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G164260
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Serine-rich protein-like protein
Location	Cla97Chr09 : 1822850 .. 1823089 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTAA

mRNA sequence

ATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTAA

Coding sequence (CDS)

ATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTAA

Protein sequence

MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHKV

Homology

[Close]

BLAST of Cla97C09G164260 vs. NCBI nr
Match: KGN45357.1 (hypothetical protein Csa_7G446750 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRF 60
          MCYP +P HR TAF FA  GR +VA  +E VRQQ+S   GGG KCICSPTTHPGSF+CRF
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRS---GGGYKCICSPTTHPGSFKCRF 60

Query: 61 HQRDYRWVSRSRFSK 76
          HQ DY+WVSRS  SK
Sbjct: 61 HQGDYKWVSRSTTSK 72

[Close]

BLAST of Cla97C09G164260 vs. NCBI nr
Match: OAY53734.1 (hypothetical protein MANES_03G019500 [Manihot esculenta])

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-08
Identity = 39/79 (49.37%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 1  MCYPAVPL--HRATAFGFAGPGRPLVAPAQEV-----VRQQKSGGDGGGN--KCICSPTT 60
          MCY  +P   H  TA       R LV  A E       R + SGGDGGG+  KC+CSPT 
Sbjct: 1  MCYSVMPFVTHARTA---EEEQRWLVFQAVETTGAEPARTETSGGDGGGSMKKCVCSPTR 60

Query: 61 HPGSFRCRFHQRDYRWVSR 71
          HPGSFRCR H  DY W  R
Sbjct: 61 HPGSFRCRHHHGDYEWGRR 76

[Close]

BLAST of Cla97C09G164260 vs. NCBI nr
Match: EFH54949.1 (hypothetical protein ARALYDRAFT_481219, partial [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 24 VAPAQEVVRQQKSGGDGGG--NKCICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHK 79
          VA   E     +SGGDGG    KC+CSP+ HP SF+CR+HQ +Y+W+  S  S  HK
Sbjct: 27 VATDVEATAGHRSGGDGGDGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSLHK 83

[Close]

BLAST of Cla97C09G164260 vs. NCBI nr
Match: KMT00790.1 (hypothetical protein BVRB_9g220700 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 1  MCYPAVPLHRATAFGFAGPGRP--LVAPAQEVVRQQ---KSGGDGGGNKCICSPTTHPGS 60
          MCYP V L + T     G  R   +V  A+  V+++       DG   +C+CSPT+HPGS
Sbjct: 1  MCYPIVQLPKGTDDSRRGEWRTPRMVVQAEVAVQREVVISGSNDGRERQCVCSPTSHPGS 60

Query: 61 FRCRFHQRDYRWVSRS 72
          FRCR H+ +Y W S +
Sbjct: 61 FRCRNHRANYNWTSHA 76

[Close]

BLAST of Cla97C09G164260 vs. NCBI nr
Match: XP_002878690.2 (uncharacterized protein LOC9316576 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 24  VAPAQEVVRQQKSGGDGGG--NKCICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHK 79
           VA   E     +SGGDGG    KC+CSP+ HP SF+CR+HQ +Y+W+  S  S  HK
Sbjct: 74  VATDVEATAGHRSGGDGGDGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSLHK 130

[Close]

BLAST of Cla97C09G164260 vs. TrEMBL
Match: tr|A0A0A0KAE1|A0A0A0KAE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRF 60
          MCYP +P HR TAF FA  GR +VA  +E VRQQ+S   GGG KCICSPTTHPGSF+CRF
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRS---GGGYKCICSPTTHPGSFKCRF 60

Query: 61 HQRDYRWVSRSRFSK 76
          HQ DY+WVSRS  SK
Sbjct: 61 HQGDYKWVSRSTTSK 72

[Close]

BLAST of Cla97C09G164260 vs. TrEMBL
Match: tr|A0A2C9W3Q9|A0A2C9W3Q9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019500 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-08
Identity = 39/79 (49.37%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 1  MCYPAVPL--HRATAFGFAGPGRPLVAPAQEV-----VRQQKSGGDGGGN--KCICSPTT 60
          MCY  +P   H  TA       R LV  A E       R + SGGDGGG+  KC+CSPT 
Sbjct: 1  MCYSVMPFVTHARTA---EEEQRWLVFQAVETTGAEPARTETSGGDGGGSMKKCVCSPTR 60

Query: 61 HPGSFRCRFHQRDYRWVSR 71
          HPGSFRCR H  DY W  R
Sbjct: 61 HPGSFRCRHHHGDYEWGRR 76

[Close]

BLAST of Cla97C09G164260 vs. TrEMBL
Match: tr|D7LFC8|D7LFC8_ARALL (Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_481219 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-07
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 24 VAPAQEVVRQQKSGGDGGG--NKCICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHK 79
          VA   E     +SGGDGG    KC+CSP+ HP SF+CR+HQ +Y+W+  S  S  HK
Sbjct: 27 VATDVEATAGHRSGGDGGDGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSLHK 83

[Close]

BLAST of Cla97C09G164260 vs. TrEMBL
Match: tr|A0A103XNQ1|A0A103XNQ1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004032 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.0e-07
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 27 AQEVVRQQKSGGDGGG------NKCICSPTTHPGSFRCRFHQRDYRWVSR 71
          A  +V  ++ GG GGG      N+C+CSPT+HPGSFRCR+H  +Y W SR
Sbjct: 25 APRIVVAEEDGGRGGGASHAVTNQCLCSPTSHPGSFRCRYHHNEYIWGSR 74

[Close]

BLAST of Cla97C09G164260 vs. TrEMBL
Match: tr|A0A2N9G183|A0A2N9G183_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21194 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 38/88 (43.18%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 1  MCYPAVPL--------HRATAFGFAGPGRPLVAPAQEVVRQQ-------KSGGDGGG--- 60
          MC+   PL        +R   F +A PG P      EVV QQ         G DGGG   
Sbjct: 1  MCHSDFPLVGVTYDWRNRRRQFAWAEPG-PGGTAMVEVVNQQAPVELARARGVDGGGATK 60

Query: 61 NKCICSPTTHPGSFRCRFHQRDYRWVSR 71
            C+CSPT HPGSFRCR+H+  Y WV R
Sbjct: 61 KHCLCSPTRHPGSFRCRYHRSKYIWVGR 87

[Close]

BLAST of Cla97C09G164260 vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 44 KCICSPTTHPGSFRCRFHQR 64
          KC+CSPTTHPGSFRC FH+R
Sbjct: 70 KCLCSPTTHPGSFRCSFHRR 89

[Close]

BLAST of Cla97C09G164260 vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 15/20 (75.00%), Postives = 20/20 (100.00%), Query Frame = 0


Query: 45 CICSPTTHPGSFRCRFHQRD 65
          C+C+PTTHPGSFRCR+H+R+
Sbjct: 65 CLCAPTTHPGSFRCRYHRRN 84

[Close]

BLAST of Cla97C09G164260 vs. TAIR10
Match: AT5G55980.1 (serine-rich protein-related)

HSP 1 Score: 44.3 bits (103), Expect = 4.1e-05
Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 0


Query: 32 RQQKSGGDGGGNKCICSPTTHPGSFRCRFHQRD 65
          R + S G      C+CSPTTH GSFRCR+H+ D
Sbjct: 51 RWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVD 83

[Close]

BLAST of Cla97C09G164260 vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 7.0e-05
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 0


Query: 45 CICSPTTHPGSFRCRFHQ 63
          C+CSPTTHPGSFRCR H+
Sbjct: 44 CLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of Cla97C09G164260 vs. TAIR10
Match: AT1G24577.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.0e-04
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 0


Query: 45 CICSPTTHPGSFRCRFHQ 63
          CICSPTTHPGSF+C+ H+
Sbjct: 32 CICSPTTHPGSFKCKLHR 49

The following BLAST results are available for this feature:

BLAST of Cla97C09G164260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45357.1	2.3e-22	69.33	hypothetical protein Csa_7G446750 [Cucumis sativus]	[more]
OAY53734.1	5.6e-08	49.37	hypothetical protein MANES_03G019500 [Manihot esculenta]	[more]
EFH54949.1	3.6e-07	49.12	hypothetical protein ARALYDRAFT_481219, partial [Arabidopsis lyrata subsp. lyrat...	[more]
KMT00790.1	3.6e-07	40.79	hypothetical protein BVRB_9g220700 isoform B [Beta vulgaris subsp. vulgaris]	[more]
XP_002878690.2	3.6e-07	49.12	uncharacterized protein LOC9316576 [Arabidopsis lyrata subsp. lyrata]	[more]

BLAST of Cla97C09G164260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAE1\|A0A0A0KAE1_CUCSA	1.5e-22	69.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1	[more]
tr\|A0A2C9W3Q9\|A0A2C9W3Q9_MANES	3.7e-08	49.37	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019500 PE=4 SV=...	[more]
tr\|D7LFC8\|D7LFC8_ARALL	2.4e-07	49.12	Uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata OX=81972 ...	[more]
tr\|A0A103XNQ1\|A0A103XNQ1_CYNCS	9.0e-07	52.00	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004...	[more]
tr\|A0A2N9G183\|A0A2N9G183_FAGSY	1.2e-06	43.18	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21194 PE=4 SV=1	[more]

BLAST of Cla97C09G164260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G164260 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20370.1	6.3e-06	85.00	serine-rich protein-related	[more]
AT3G13227.1	1.4e-05	75.00	serine-rich protein-related	[more]
AT5G55980.1	4.1e-05	54.55	serine-rich protein-related	[more]
AT1G67910.1	7.0e-05	83.33	unknown protein	[more]
AT1G24577.1	2.0e-04	77.78	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G164260.1	Cla97C09G164260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 28..71
None	No IPR available	PANTHER	PTHR33132:SF10	SUBFAMILY NOT NAMED	coord: 28..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G164260	Cla015434	Watermelon (97103) v1	wmwmbB041
Cla97C09G164260	Csa7G446750	Cucumber (Chinese Long) v2	cuwmbB570
Cla97C09G164260	MELO3C024233	Melon (DHL92) v3.5.1	mewmbB222
Cla97C09G164260	CSPI07G21300	Wild cucumber (PI 183967)	cpiwmbB596
Cla97C09G164260	Cucsa.359030	Cucumber (Gy14) v1	cgywmbB619
Cla97C09G164260	MELO3C024233.2	Melon (DHL92) v3.6.1	medwmbB207
Cla97C09G164260	CsaV3_7G033200	Cucumber (Chinese Long) v3	cucwmbB592
Cla97C09G164260	Bhi02G000931	Wax gourd	wgowmbB665

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G164260	Bottle gourd (USVL1VR-Ls)	lsiwmbB213
Cla97C09G164260	Bottle gourd (USVL1VR-Ls)	lsiwmbB385
Cla97C09G164260	Bottle gourd (USVL1VR-Ls)	lsiwmbB420
Cla97C09G164260	Melon (DHL92) v3.6.1	medwmbB356
Cla97C09G164260	Melon (DHL92) v3.5.1	mewmbB273
Cla97C09G164260	Melon (DHL92) v3.5.1	mewmbB365
Cla97C09G164260	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G164260	Watermelon (Charleston Gray)	wcgwmbB312
Cla97C09G164260	Watermelon (97103) v1	wmwmbB183
Cla97C09G164260	Wax gourd	wgowmbB231
Cla97C09G164260	Wax gourd	wgowmbB614
Cla97C09G164260	Watermelon (97103) v2	wmbwmbB169
Cla97C09G164260	Silver-seed gourd	carwmbB0040
Cla97C09G164260	Silver-seed gourd	carwmbB0127
Cla97C09G164260	Silver-seed gourd	carwmbB0137
Cla97C09G164260	Silver-seed gourd	carwmbB0209
Cla97C09G164260	Cucumber (Gy14) v2	cgybwmbB246
Cla97C09G164260	Silver-seed gourd	carwmbB0782
Cla97C09G164260	Silver-seed gourd	carwmbB1089
Cla97C09G164260	Cucumber (Gy14) v2	cgybwmbB541
Cla97C09G164260	Cucurbita maxima (Rimu)	cmawmbB088
Cla97C09G164260	Cucurbita maxima (Rimu)	cmawmbB281
Cla97C09G164260	Cucurbita maxima (Rimu)	cmawmbB387
Cla97C09G164260	Cucurbita maxima (Rimu)	cmawmbB509
Cla97C09G164260	Cucurbita maxima (Rimu)	cmawmbB942
Cla97C09G164260	Cucurbita moschata (Rifu)	cmowmbB077
Cla97C09G164260	Cucurbita moschata (Rifu)	cmowmbB139
Cla97C09G164260	Cucurbita moschata (Rifu)	cmowmbB261
Cla97C09G164260	Cucurbita moschata (Rifu)	cmowmbB370
Cla97C09G164260	Cucurbita moschata (Rifu)	cmowmbB490
Cla97C09G164260	Cucurbita moschata (Rifu)	cmowmbB918
Cla97C09G164260	Cucumber (Chinese Long) v3	cucwmbB258