Cucsa.359030 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.359030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	serine-rich protein-related
Location	scaffold03588 : 133682 .. 134212 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

aTGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACCAACATAGTTTAACTTTCGAAATATTTGTATAAATTCATACATATATACACAAAACTTGTAAGTTACGTATAGATGAGATATGTGGATAGGCTCTGGtTTTTTAAATTTGTTGTGTTGGTGGGTTAGAATTGTGTTGAAATCAGGTGAATTAAATGAAAGTTTTCTTTTTCTTTGACATTAATTATGATGTGATGAATGGTGTTGATCATAAGCTTCCCAAACAGAGGAACTTATGCAACTATGTGTACTGTTACAAACGTGGCATGTTATGTAGATTGTTACTTTAGAAAAAGAAGACAATTATTT

mRNA sequence

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACCAACATAGTTTAACTTTCGAAATATTTGTATAAATTCATACATATATACACAAAACTTGTAAGTTACGTATAGATGAGATATGTGGATAGGCTCTGGTTTTTTAAATTTGTTGTGTTGGTGGGTTAGAATTGTGTTGAAATCAGGTGAATTAAATGAAAGTTTTCTTTTTCTTTGACATTAATTATGATGTGATGAATGGTGTTGATCATAAGCTTCCCAAACAGAGGAACTTATGCAACTATGTGTACTGTTACAAACGTGGCATGTTATGTAGATTGTTACTTTAGAAAAAGAAGACAATTATTT

Coding sequence (CDS)

aTGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACCAACATAGTTTAA

Protein sequence

MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQGDYKWVSRSTTSKAKTNIV*

Homology

[Close]

BLAST of Cucsa.359030 vs. TrEMBL
Match: A0A0A0KAE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKTNIV 79
          DYKWVSRSTTSKAKTNIV
Sbjct: 61 DYKWVSRSTTSKAKTNIV 78

[Close]

BLAST of Cucsa.359030 vs. TrEMBL
Match: D7KJG0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474355 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.6e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]

BLAST of Cucsa.359030 vs. TrEMBL
Match: A0MDJ2_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1


Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T  +  +    V A           GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSTTSKAKTNI 78
          FKCR+HQ +Y+W+  S++S + +++
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSSSL 85

[Close]

BLAST of Cucsa.359030 vs. TrEMBL
Match: A0A078EN61_BRANA (BnaA08g01490D protein OS=Brassica napus GN=BnaA08g01490D PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1


Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGY--KCICSPTTHP 60
          MCY        P   FH     +  + G +V   V   V + R GGG   KC+CSP+THP
Sbjct: 1  MCYKKIIPLVIPPESFHE----NVPAAGVTVATEVVATVGRHRDGGGEKKKCVCSPSTHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSK 73
           SFKCR+H  +Y+WV  S+  K
Sbjct: 61 RSFKCRYHHHEYQWVPSSSLHK 78

[Close]

BLAST of Cucsa.359030 vs. TrEMBL
Match: Q1G3Y9_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At1g52342 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1


Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T  +  +    V A           GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSTTSKAKTNI 78
          FKCR+HQ +Y+W+  S++S + +++
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSSSL 85

[Close]

BLAST of Cucsa.359030 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-10
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1


Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T  +  +    V A           GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSTTSKAKTNI 78
          FKCR+HQ +Y+W+  S++S + +++
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSSSL 85

[Close]

BLAST of Cucsa.359030 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 1


Query: 18 SHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH  S V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of Cucsa.359030 vs. NCBI nr
Match: gi|700190124|gb|KGN45357.1| (hypothetical protein Csa_7G446750 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKTNIV 79
          DYKWVSRSTTSKAKTNIV
Sbjct: 61 DYKWVSRSTTSKAKTNIV 78

[Close]

BLAST of Cucsa.359030 vs. NCBI nr
Match: gi|727438966|ref|XP_010500835.1| (PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1


Query: 1  MCYPTLP---------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYK-CICSPTTHP 60
          MCY  LP         FH  T  +  +   +V + VE     +  GGG K C+CSP+ HP
Sbjct: 1  MCYKILPPLVVIPSGSFHENTPVAEVTTVATVKSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKTN 77
           SFKCR+HQ +Y+W+  S++S + ++
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSSS 86

[Close]

BLAST of Cucsa.359030 vs. NCBI nr
Match: gi|297852990|ref|XP_002894376.1| (hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]

BLAST of Cucsa.359030 vs. NCBI nr
Match: gi|727615045|ref|XP_010479743.1| (PREDICTED: uncharacterized protein LOC104758556 [Camelina sativa])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-07
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 1


Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG--YKCICSPTTHP 60
          MCY  LP        FH  T  +  +   +V  +  E     R+GGG   KC+CSP+ HP
Sbjct: 1  MCYKILPPLVIPSGSFHENTPVAEVT---TVATSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKTNI 78
           SFKCR+HQ +Y+W+  S++S + + +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSSTL 84

[Close]

BLAST of Cucsa.359030 vs. NCBI nr
Match: gi|727578772|ref|XP_010462072.1| (PREDICTED: uncharacterized protein LOC104742739 [Camelina sativa])

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-07
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG--YKCICSPTTHP 60
          MCY  LP        FH  T  +  +   +V  +  E     R+GGG   KC+CSP+ HP
Sbjct: 1  MCYKILPPLVTPSGSFHENTPVAEVT---TVATSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKA 74
           SFKCR+HQ +Y+W+  S++S +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSS 80

The following BLAST results are available for this feature:

BLAST of Cucsa.359030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE1_CUCSA	1.3e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1	[more]
D7KJG0_ARALL	7.6e-08	45.12	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0MDJ2_ARATH	1.1e-06	34.12	Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1	[more]
A0A078EN61_BRANA	1.1e-06	40.24	BnaA08g01490D protein OS=Brassica napus GN=BnaA08g01490D PE=4 SV=1	[more]
Q1G3Y9_ARATH	1.1e-06	34.12	Uncharacterized protein OS=Arabidopsis thaliana GN=At1g52342 PE=4 SV=1	[more]

BLAST of Cucsa.359030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52342.1	5.5e-10	34.12	unknown protein	[more]
AT1G67910.1	6.3e-06	47.62	unknown protein	[more]

BLAST of Cucsa.359030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190124\|gb\|KGN45357.1\|	1.8e-39	100.00	hypothetical protein Csa_7G446750 [Cucumis sativus]	[more]
gi\|727438966\|ref\|XP_010500835.1\|	4.9e-08	37.21	PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa]	[more]
gi\|297852990\|ref\|XP_002894376.1\|	1.1e-07	45.12	hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|727615045\|ref\|XP_010479743.1\|	3.2e-07	36.78	PREDICTED: uncharacterized protein LOC104758556 [Camelina sativa]	[more]
gi\|727578772\|ref\|XP_010462072.1\|	7.0e-07	38.55	PREDICTED: uncharacterized protein LOC104742739 [Camelina sativa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.359030.1	Cucsa.359030.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.359030	Cla015434	Watermelon (97103) v1	cgywmB647
Cucsa.359030	MELO3C024233	Melon (DHL92) v3.5.1	cgymeB579
Cucsa.359030	CSPI07G21300	Wild cucumber (PI 183967)	cgycpiB535
Cucsa.359030	MELO3C024233.2	Melon (DHL92) v3.6.1	cgymedB580
Cucsa.359030	Cla97C09G164260	Watermelon (97103) v2	cgywmbB619

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.359030	Melon (DHL92) v3.6.1	cgymedB582
Cucsa.359030	Silver-seed gourd	carcgyB0147
Cucsa.359030	Silver-seed gourd	carcgyB0247
Cucsa.359030	Silver-seed gourd	carcgyB0839
Cucsa.359030	Silver-seed gourd	carcgyB1148
Cucsa.359030	Cucumber (Chinese Long) v3	cgycucB548
Cucsa.359030	Cucumber (Chinese Long) v3	cgycucB550
Cucsa.359030	Watermelon (97103) v2	cgywmbB617
Cucsa.359030	Wax gourd	cgywgoB718
Cucsa.359030	Wax gourd	cgywgoB719
Cucsa.359030	Cucurbita maxima (Rimu)	cgycmaB0982
Cucsa.359030	Cucurbita maxima (Rimu)	cgycmaB0984
Cucsa.359030	Cucurbita maxima (Rimu)	cgycmaB0986
Cucsa.359030	Cucurbita maxima (Rimu)	cgycmaB0987
Cucsa.359030	Cucurbita moschata (Rifu)	cgycmoB0986
Cucsa.359030	Cucurbita moschata (Rifu)	cgycmoB0988
Cucsa.359030	Cucurbita moschata (Rifu)	cgycmoB0989
Cucsa.359030	Cucumber (Chinese Long) v2	cgycuB508
Cucsa.359030	Melon (DHL92) v3.5.1	cgymeB581
Cucsa.359030	Watermelon (Charleston Gray)	cgywcgB610
Cucsa.359030	Watermelon (Charleston Gray)	cgywcgB615
Cucsa.359030	Watermelon (97103) v1	cgywmB651
Cucsa.359030	Cucurbita pepo (Zucchini)	cgycpeB0936
Cucsa.359030	Cucurbita pepo (Zucchini)	cgycpeB0938
Cucsa.359030	Bottle gourd (USVL1VR-Ls)	cgylsiB577
Cucsa.359030	Bottle gourd (USVL1VR-Ls)	cgylsiB581