CSPI07G21300.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G21300.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionserine-rich protein-related
LocationChr7 : 18266873 .. 18267103 (+)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

mRNA sequence

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

Coding sequence (CDS)

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA
Homology
[Close]
BLAST of CSPI07G21300.1 vs. TrEMBL
Match: A0A0A0KAE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKT 76
          DYKWVSRSTTSKAKT
Sbjct: 61 DYKWVSRSTTSKAKT 75

[Close]
BLAST of CSPI07G21300.1 vs. TrEMBL
Match: D7KJG0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474355 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]
BLAST of CSPI07G21300.1 vs. TrEMBL
Match: A0A078EN61_BRANA (BnaA08g01490D protein OS=Brassica napus GN=BnaA08g01490D PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-07
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1 

Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGY--KCICSPTTHP 60
          MCY        P   FH     +  + G +V   V   V + R GGG   KC+CSP+THP
Sbjct: 1  MCYKKIIPLVIPPESFHE----NVPAAGVTVATEVVATVGRHRDGGGEKKKCVCSPSTHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSK 73
           SFKCR+H  +Y+WV  S+  K
Sbjct: 61 RSFKCRYHHHEYQWVPSSSLHK 78

[Close]
BLAST of CSPI07G21300.1 vs. TrEMBL
Match: R0GN87_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010773mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-07
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGR-----SVVAAVE-EAVRQQRSGGG---YKCICSPTTHPG 60
          MCY  L  H     SF  +       +VV  VE EA    R+GGG    KC+CSP+ HP 
Sbjct: 1  MCYKILLPHVIHPESFQENTPVMAEVTVVTEVEVEATVGNRNGGGGGKKKCVCSPSKHPR 60

Query: 61 SFKCRFHQGDYKWVSRSTTSKA 74
          SFKCR+HQ +Y+W+  S++S +
Sbjct: 61 SFKCRYHQHEYQWIPLSSSSSS 82

[Close]
BLAST of CSPI07G21300.1 vs. TrEMBL
Match: M1A3Y9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005605 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGRSV-VAAVEEAVRQQRSGGG--YKCICSPTTHPGSFKCRF 60
          MCY  +P+        A  GR + +   + ++R   S     ++C+CSPT HPGSF+CR 
Sbjct: 1  MCYSEVPYWDGNLDKRAHRGRYLSLVQAQVSIRGADSAETKKFECVCSPTIHPGSFRCRH 60

Query: 61 HQGDYKWVSR 68
          H+ DYKWV+R
Sbjct: 61 HRADYKWVAR 70

[Close]
BLAST of CSPI07G21300.1 vs. TAIR10
Match: AT1G52342.1 (AT1G52342.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-10
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 1 

Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T  +  +    V A           GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSTTSKAKT 76
          FKCR+HQ +Y+W+  S++S + +
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSS 83

[Close]
BLAST of CSPI07G21300.1 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.7e-06
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 1 

Query: 18 SHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH  S V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]
BLAST of CSPI07G21300.1 vs. NCBI nr
Match: gi|700190124|gb|KGN45357.1| (hypothetical protein Csa_7G446750 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKT 76
          DYKWVSRSTTSKAKT
Sbjct: 61 DYKWVSRSTTSKAKT 75

[Close]
BLAST of CSPI07G21300.1 vs. NCBI nr
Match: gi|727438966|ref|XP_010500835.1| (PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1  MCYPTLP---------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYK-CICSPTTHP 60
          MCY  LP         FH  T  +  +   +V + VE     +  GGG K C+CSP+ HP
Sbjct: 1  MCYKILPPLVVIPSGSFHENTPVAEVTTVATVKSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKT 76
           SFKCR+HQ +Y+W+  S++S + +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSS 85

[Close]
BLAST of CSPI07G21300.1 vs. NCBI nr
Match: gi|297852990|ref|XP_002894376.1| (hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]
BLAST of CSPI07G21300.1 vs. NCBI nr
Match: gi|727615045|ref|XP_010479743.1| (PREDICTED: uncharacterized protein LOC104758556 [Camelina sativa])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG--YKCICSPTTHP 60
          MCY  LP        FH  T  +  +   +V  +  E     R+GGG   KC+CSP+ HP
Sbjct: 1  MCYKILPPLVIPSGSFHENTPVAEVT---TVATSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKT 76
           SFKCR+HQ +Y+W+  S++S + +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSS 82

[Close]
BLAST of CSPI07G21300.1 vs. NCBI nr
Match: gi|727578772|ref|XP_010462072.1| (PREDICTED: uncharacterized protein LOC104742739 [Camelina sativa])

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1 

Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG--YKCICSPTTHP 60
          MCY  LP        FH  T  +  +   +V  +  E     R+GGG   KC+CSP+ HP
Sbjct: 1  MCYKILPPLVTPSGSFHENTPVAEVT---TVATSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKA 74
           SFKCR+HQ +Y+W+  S++S +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSS 80

The following BLAST results are available for this feature:
BLAST of CSPI07G21300.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G21300.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAE1_CUCSA3.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1[more]
D7KJG0_ARALL3.3e-0845.12Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A078EN61_BRANA6.2e-0740.24BnaA08g01490D protein OS=Brassica napus GN=BnaA08g01490D PE=4 SV=1[more]
R0GN87_9BRAS8.1e-0742.68Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010773mg PE=4 SV=1[more]
M1A3Y9_SOLTU1.1e-0640.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005605 PE=4 SV=1[more]
BLAST of CSPI07G21300.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52342.17.0e-1034.94 unknown protein[more]
AT1G67910.14.7e-0647.62 unknown protein[more]
BLAST of CSPI07G21300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190124|gb|KGN45357.1|4.4e-38100.00hypothetical protein Csa_7G446750 [Cucumis sativus][more]
gi|727438966|ref|XP_010500835.1|3.6e-0837.65PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa][more]
gi|297852990|ref|XP_002894376.1|4.7e-0845.12hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata][more]
gi|727615045|ref|XP_010479743.1|3.1e-0737.65PREDICTED: uncharacterized protein LOC104758556 [Camelina sativa][more]
gi|727578772|ref|XP_010462072.1|4.0e-0738.55PREDICTED: uncharacterized protein LOC104742739 [Camelina sativa][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G21300CSPI07G21300gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G21300.1CSPI07G21300.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G21300.1.cds1CSPI07G21300.1.cds1CDS