Cla014089 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014089
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 28124365 .. 28124685 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGATCTCGGCTGCCGTTGCCGTCGACTGCCTTACCTCTCCGGCTGCGTTCCCGCTTCTCCGGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGCGGCGCTGGAGGTGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAGGTGGGTGAAAGATAGTATGAGTATGTATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCCCAGAATTTTGACGAGGGGAGCCGTTATTGTGAGAGCAATCGAGAAAGTGAGATTGGGATTTCGAGATGA

mRNA sequence

ATGGAGAGAGATCTCGGCTGCCGTTGCCGTCGACTGCCTTACCTCTCCGGCTGCGTTCCCGCTTCTCCGGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGCGGCGCTGGAGGTGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAGGTGGGTGAAAGATAGTATGAGTATGTATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCCCAGAATTTTGACGAGGGGAGCCGTTATTGTGAGAGCAATCGAGAAAGTGAGATTGGGATTTCGAGATGA

Coding sequence (CDS)

ATGGAGAGAGATCTCGGCTGCCGTTGCCGTCGACTGCCTTACCTCTCCGGCTGCGTTCCCGCTTCTCCGGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGCGGCGCTGGAGGTGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAGGTGGGTGAAAGATAGTATGAGTATGTATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCCCAGAATTTTGACGAGGGGAGCCGTTATTGTGAGAGCAATCGAGAAAGTGAGATTGGGATTTCGAGATGA

Protein sequence

MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRRWVKDSMSMYGSKSLSFQYDAVSYSQNFDEGSRYCESNRESEIGISR

Homology

[Close]

BLAST of Cla014089 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-41
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 1


Query: 1   MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
           M+RDLGCR  RLPYLSGCVP+SPACFPIHEGVEY+RIHGG G     KRSGWRWRYLLR+
Sbjct: 1   MDRDLGCR--RLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA----KRSGWRWRYLLRK 60

Query: 61  WVKDSMSMYGSKSLSFQYDAVSYSQNFDEGSRYCES-NRESEIGISR 107
           WVKD M++YGSKSLSFQYDAVSYSQNFDEGSR  ES +RE+EIGISR
Sbjct: 61  WVKDGMNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of Cla014089 vs. TrEMBL
Match: A0A0D2SIL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.8e-19
Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          MERDL  R R   Y  GC   SP+CFP+HE ++YSRIH     +GG  R+  RWR LLRR
Sbjct: 4  MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIH--HCSSGGDNRTRRRWRNLLRR 63

Query: 61 WVKD-SMSMYGSK-SLSFQYDAVSYSQNFDEGSRYCES 97
           VKD   S+YGSK  LSF YDAVSYSQNFDEG    ES
Sbjct: 64 LVKDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDES 99

[Close]

BLAST of Cla014089 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          MERDL  R  R  Y SGC+  SP+CFP+HE +EYSRIH     +   +R   RWR LLRR
Sbjct: 4  MERDLSHR--RSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRR---RWRNLLRR 63

Query: 61 WVKDSMS-MYGSKSLSFQYDAVSYSQNFDEGSRYCES 97
           V+D  S +YGSK LSF YDAVSYSQNFD+G  + ES
Sbjct: 64 LVRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCHHDES 94

[Close]

BLAST of Cla014089 vs. TrEMBL
Match: B9SMK8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          MERD      R   LSGC+ +SP+CFP+H+ +EYSRIH   G +   KRS  RWR+ +RR
Sbjct: 1  MERD---HLPRSSCLSGCMISSPSCFPVHDEMEYSRIHSSSGNS-SNKRSTRRWRHFIRR 60

Query: 61 WVKD-SMSMYGS----KSLSFQYDAVSYSQNFDEGSRYCES 97
           V+D   S+YGS    K LSF YDAVSYSQNFDEG  + +S
Sbjct: 61 LVRDGKSSLYGSSSSPKPLSFHYDAVSYSQNFDEGCHHEDS 97

[Close]

BLAST of Cla014089 vs. TrEMBL
Match: A0A0D2S7M4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-16
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          M RDL  R R+  Y SGC   SP+C P  E +EYSRIH    G+ G ++   RWR LLRR
Sbjct: 4  MGRDLSRR-RQSSYFSGCYTMSPSCLPGKEEMEYSRIH--ECGSSGSEKRRQRWRNLLRR 63

Query: 61 WVKD-SMSMYG-SKSLSFQYDAVSYSQNFDEGSRYCES 97
           VKD   S+YG SK LSF YDAVSYSQNFDEG  + +S
Sbjct: 64 LVKDGKSSIYGSSKPLSFHYDAVSYSQNFDEGFHHQQS 98

[Close]

BLAST of Cla014089 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-41
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 1


Query: 1   MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
           M+RDLGCR  RLPYLSGCVP+SPACFPIHEGVEY+RIHGG G     KRSGWRWRYLLR+
Sbjct: 1   MDRDLGCR--RLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA----KRSGWRWRYLLRK 60

Query: 61  WVKDSMSMYGSKSLSFQYDAVSYSQNFDEGSRYCES-NRESEIGISR 107
           WVKD M++YGSKSLSFQYDAVSYSQNFDEGSR  ES +RE+EIGISR
Sbjct: 61  WVKDGMNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of Cla014089 vs. NCBI nr
Match: gi|823193428|ref|XP_012492065.1| (PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii])

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          MERDL  R R   Y  GC   SP+CFP+HE ++YSRIH     +GG  R+  RWR LLRR
Sbjct: 4  MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIH--HCSSGGDNRTRRRWRNLLRR 63

Query: 61 WVKD-SMSMYGSK-SLSFQYDAVSYSQNFDEGSRYCES 97
           VKD   S+YGSK  LSF YDAVSYSQNFDEG    ES
Sbjct: 64 LVKDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDES 99

[Close]

BLAST of Cla014089 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          MERDL  R  R  Y SGC+  SP+CFP+HE +EYSRIH     +   +R   RWR LLRR
Sbjct: 4  MERDLSHR--RSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRR---RWRNLLRR 63

Query: 61 WVKDSMS-MYGSKSLSFQYDAVSYSQNFDEGSRYCES 97
           V+D  S +YGSK LSF YDAVSYSQNFD+G  + ES
Sbjct: 64 LVRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCHHDES 94

[Close]

BLAST of Cla014089 vs. NCBI nr
Match: gi|255572587|ref|XP_002527227.1| (PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          MERD      R   LSGC+ +SP+CFP+H+ +EYSRIH   G +   KRS  RWR+ +RR
Sbjct: 1  MERD---HLPRSSCLSGCMISSPSCFPVHDEMEYSRIHSSSGNS-SNKRSTRRWRHFIRR 60

Query: 61 WVKD-SMSMYGS----KSLSFQYDAVSYSQNFDEGSRYCES 97
           V+D   S+YGS    K LSF YDAVSYSQNFDEG  + +S
Sbjct: 61 LVRDGKSSLYGSSSSPKPLSFHYDAVSYSQNFDEGCHHEDS 97

[Close]

BLAST of Cla014089 vs. NCBI nr
Match: gi|763773206|gb|KJB40329.1| (hypothetical protein B456_007G058100 [Gossypium raimondii])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 55/98 (56.12%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 1  MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGAGGGKRSGWRWRYLLRR 60
          M RDL  R R+  Y SGC   SP+C P  E +EYSRIH    G+ G ++   RWR LLRR
Sbjct: 4  MGRDLSRR-RQSSYFSGCYTMSPSCLPGKEEMEYSRIH--ECGSSGSEKRRQRWRNLLRR 63

Query: 61 WVKD-SMSMYG-SKSLSFQYDAVSYSQNFDEGSRYCES 97
           VKD   S+YG SK LSF YDAVSYSQNFDEG  + +S
Sbjct: 64 LVKDGKSSIYGSSKPLSFHYDAVSYSQNFDEGFHHQQS 98

The following BLAST results are available for this feature:

BLAST of Cla014089 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJW1_CUCSA	1.1e-41	81.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1	[more]
A0A0D2SIL6_GOSRA	9.8e-19	59.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1	[more]
A0A061DHC4_THECC	1.1e-17	57.73	Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1	[more]
B9SMK8_RICCO	1.4e-17	53.47	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1	[more]
A0A0D2S7M4_GOSRA	7.7e-16	56.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1	[more]

BLAST of Cla014089 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193478\|gb\|KGN48682.1\|	1.5e-41	81.31	hypothetical protein Csa_6G497320 [Cucumis sativus]	[more]
gi\|823193428\|ref\|XP_012492065.1\|	1.4e-18	59.18	PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii]	[more]
gi\|590706403\|ref\|XP_007047712.1\|	1.6e-17	57.73	Uncharacterized protein TCM_000929 [Theobroma cacao]	[more]
gi\|255572587\|ref\|XP_002527227.1\|	2.0e-17	53.47	PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis]	[more]
gi\|763773206\|gb\|KJB40329.1\|	1.1e-15	56.12	hypothetical protein B456_007G058100 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU38910	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU59496	watermelon EST collection version 2.0	transcribed_cluster
WMU64199	watermelon EST collection version 2.0	transcribed_cluster
WMU66015	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014089	Cla014089.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38910	WMU38910	transcribed_cluster
WMU59496	WMU59496	transcribed_cluster
WMU64199	WMU64199	transcribed_cluster
WMU66015	WMU66015	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 19..105 score: 5.3
None	No IPR available	PANTHER	PTHR33168:SF10	SUBFAMILY NOT NAMED	coord: 19..105 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014089	Cla97C01G017490	Watermelon (97103) v2	wmwmbB234
Cla014089	Csa6G497320	Cucumber (Chinese Long) v2	cuwmB500
Cla014089	MELO3C007699	Melon (DHL92) v3.5.1	mewmB570
Cla014089	ClCG01G018220	Watermelon (Charleston Gray)	wcgwmB141
Cla014089	CSPI06G29580	Wild cucumber (PI 183967)	cpiwmB519
Cla014089	Cucsa.103810	Cucumber (Gy14) v1	cgywmB136
Cla014089	CmaCh03G008550	Cucurbita maxima (Rimu)	cmawmB632
Cla014089	CmoCh07G005890	Cucurbita moschata (Rifu)	cmowmB816
Cla014089	Lsi01G008260	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla014089	Cp4.1LG19g10080	Cucurbita pepo (Zucchini)	cpewmB482
Cla014089	MELO3C007699.2	Melon (DHL92) v3.6.1	medwmB559
Cla014089	CsaV3_6G044800	Cucumber (Chinese Long) v3	cucwmB526
Cla014089	Bhi03G001333	Wax gourd	wgowmB435

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014089	Watermelon (97103) v1	wmwmB147
Cla014089	Cucumber (Gy14) v1	cgywmB295
Cla014089	Cucumber (Gy14) v1	cgywmB571
Cla014089	Cucurbita maxima (Rimu)	cmawmB118
Cla014089	Cucurbita maxima (Rimu)	cmawmB164
Cla014089	Cucurbita maxima (Rimu)	cmawmB762
Cla014089	Cucurbita maxima (Rimu)	cmawmB826
Cla014089	Cucurbita moschata (Rifu)	cmowmB150
Cla014089	Cucurbita moschata (Rifu)	cmowmB623
Cla014089	Cucurbita moschata (Rifu)	cmowmB755
Cla014089	Melon (DHL92) v3.5.1	mewmB323
Cla014089	Melon (DHL92) v3.5.1	mewmB377
Cla014089	Watermelon (Charleston Gray)	wcgwmB098
Cla014089	Watermelon (Charleston Gray)	wcgwmB419
Cla014089	Cucumber (Chinese Long) v2	cuwmB136
Cla014089	Cucumber (Chinese Long) v2	cuwmB264
Cla014089	Cucurbita pepo (Zucchini)	cpewmB073
Cla014089	Cucurbita pepo (Zucchini)	cpewmB111
Cla014089	Cucurbita pepo (Zucchini)	cpewmB801
Cla014089	Bottle gourd (USVL1VR-Ls)	lsiwmB325
Cla014089	Bottle gourd (USVL1VR-Ls)	lsiwmB379
Cla014089	Bottle gourd (USVL1VR-Ls)	lsiwmB489
Cla014089	Cucumber (Gy14) v2	cgybwmB249
Cla014089	Cucumber (Gy14) v2	cgybwmB130
Cla014089	Cucumber (Gy14) v2	cgybwmB468
Cla014089	Melon (DHL92) v3.6.1	medwmB320
Cla014089	Melon (DHL92) v3.6.1	medwmB372
Cla014089	Silver-seed gourd	carwmB0005
Cla014089	Silver-seed gourd	carwmB0059
Cla014089	Silver-seed gourd	carwmB0407
Cla014089	Silver-seed gourd	carwmB0633
Cla014089	Cucumber (Chinese Long) v3	cucwmB274
Cla014089	Watermelon (97103) v2	wmwmbB255
Cla014089	Watermelon (97103) v2	wmwmbB282
Cla014089	Wax gourd	wgowmB426
Cla014089	Wax gourd	wgowmB431
Cla014089	Wax gourd	wgowmB633
Cla014089	Watermelon (97103) v1	wmwmB068