CmaCh03G008550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G008550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_8
Location	Cma_Chr03 : 6381886 .. 6382179 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGGATCTTGCCCGCCGTCTGCTCCCGTACCTTTCCGGCTGCGCTGTCGCTTCTCCGGCATGCTTTCCGGTCCACGAAGGCGTCGAGTACTCGCGCATCCACAGCGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAAGTGGGTGAAGGAGAGCATGAGCACATACGGGTCCAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCACAGAATTTCGACGAGGGAAGCCATTATTACGAGAGCAATCGAGAAAATGAGATTCGGATTTCGAGATGA

mRNA sequence

ATGGACAGGGATCTTGCCCGCCGTCTGCTCCCGTACCTTTCCGGCTGCGCTGTCGCTTCTCCGGCATGCTTTCCGGTCCACGAAGGCGTCGAGTACTCGCGCATCCACAGCGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAAGTGGGTGAAGGAGAGCATGAGCACATACGGGTCCAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCACAGAATTTCGACGAGGGAAGCCATTATTACGAGAGCAATCGAGAAAATGAGATTCGGATTTCGAGATGA

Coding sequence (CDS)

ATGGACAGGGATCTTGCCCGCCGTCTGCTCCCGTACCTTTCCGGCTGCGCTGTCGCTTCTCCGGCATGCTTTCCGGTCCACGAAGGCGTCGAGTACTCGCGCATCCACAGCGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAAGTGGGTGAAGGAGAGCATGAGCACATACGGGTCCAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCACAGAATTTCGACGAGGGAAGCCATTATTACGAGAGCAATCGAGAAAATGAGATTCGGATTTCGAGATGA

Protein sequence

MDRDLARRLLPYLSGCAVASPACFPVHEGVEYSRIHSGKRSGWRWRYLLRKWVKESMSTYGSKSLSFQYDAVSYSQNFDEGSHYYESNRENEIRISR

Homology

[Close]

BLAST of CmaCh03G008550 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-37
Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 1   MDRDLARRLLPYLSGCAVASPACFPVHEGVEYSRIHSG---KRSGWRWRYLLRKWVKESM 60
           MDRDL  R LPYLSGC  +SPACFP+HEGVEY+RIH G   KRSGWRWRYLLRKWVK+ M
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGAKRSGWRWRYLLRKWVKDGM 60

Query: 61  STYGSKSLSFQYDAVSYSQNFDEGSHYYES-NRENEIRISR 98
           + YGSKSLSFQYDAVSYSQNFDEGS  YES +RENEI ISR
Sbjct: 61  NIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of CmaCh03G008550 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MDRDLARRLLPYLSGCAVASPACFPVHEGVEYSRIH----SGKRSGWRWRYLLRKWVKES 60
           M+RDL+ R   Y SGC + SP+CFPVHE +EYSRIH    S  ++  RWR LLR+ V++ 
Sbjct: 4   MERDLSHRRSFYFSGCMM-SPSCFPVHEEMEYSRIHYRSSSSDKTRRRWRNLLRRLVRDG 63

Query: 61  MST-YGSKSLSFQYDAVSYSQNFDEGSHYYESNRENEI 94
            S+ YGSK LSF YDAVSYSQNFD+G H+ ES     +
Sbjct: 64  KSSIYGSKPLSFHYDAVSYSQNFDDGCHHDESGHGRRV 100

[Close]

BLAST of CmaCh03G008550 vs. TrEMBL
Match: B9SMK8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 13 LSGCAVASPACFPVHEGVEYSRIH------SGKRSGWRWRYLLRKWVKESMST-YGS--- 72
          LSGC ++SP+CFPVH+ +EYSRIH      S KRS  RWR+ +R+ V++  S+ YGS   
Sbjct: 12 LSGCMISSPSCFPVHDEMEYSRIHSSSGNSSNKRSTRRWRHFIRRLVRDGKSSLYGSSSS 71

Query: 73 -KSLSFQYDAVSYSQNFDEGSHYYES 88
           K LSF YDAVSYSQNFDEG H+ +S
Sbjct: 72 PKPLSFHYDAVSYSQNFDEGCHHEDS 97

[Close]

BLAST of CmaCh03G008550 vs. TrEMBL
Match: A0A0D2SIL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-16
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 1   MDRDLA--RRLLPYLSGCAVASPACFPVHEGVEYSRIH-----SGKRSGWRWRYLLRKWV 60
           M+RDL   RR   Y  GC + SP+CFPVHE ++YSRIH        R+  RWR LLR+ V
Sbjct: 4   MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRRRWRNLLRRLV 63

Query: 61  KE-SMSTYGSK-SLSFQYDAVSYSQNFDEGSHYYESNRENEI 94
           K+   S YGSK  LSF YDAVSYSQNFDEG H  ES     +
Sbjct: 64  KDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDESAHRRRV 105

[Close]

BLAST of CmaCh03G008550 vs. TrEMBL
Match: A0A0D2S7M4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-15
Identity = 54/95 (56.84%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MDRDLARRLLP-YLSGCAVASPACFPVHEGVEYSRIHSGKRSG-----WRWRYLLRKWVK 60
          M RDL+RR    Y SGC   SP+C P  E +EYSRIH    SG      RWR LLR+ VK
Sbjct: 4  MGRDLSRRRQSSYFSGCYTMSPSCLPGKEEMEYSRIHECGSSGSEKRRQRWRNLLRRLVK 63

Query: 61 ESMST-YGS-KSLSFQYDAVSYSQNFDEGSHYYES 88
          +  S+ YGS K LSF YDAVSYSQNFDEG H+ +S
Sbjct: 64 DGKSSIYGSSKPLSFHYDAVSYSQNFDEGFHHQQS 98

[Close]

BLAST of CmaCh03G008550 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-36
Identity = 80/101 (79.21%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 1   MDRDLARRLLPYLSGCAVASPACFPVHEGVEYSRIHSG---KRSGWRWRYLLRKWVKESM 60
           MDRDL  R LPYLSGC  +SPACFP+HEGVEY+RIH G   KRSGWRWRYLLRKWVK+ M
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGAKRSGWRWRYLLRKWVKDGM 60

Query: 61  STYGSKSLSFQYDAVSYSQNFDEGSHYYES-NRENEIRISR 98
           + YGSKSLSFQYDAVSYSQNFDEGS  YES +RENEI ISR
Sbjct: 61  NIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of CmaCh03G008550 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1


Query: 1   MDRDLARRLLPYLSGCAVASPACFPVHEGVEYSRIH----SGKRSGWRWRYLLRKWVKES 60
           M+RDL+ R   Y SGC + SP+CFPVHE +EYSRIH    S  ++  RWR LLR+ V++ 
Sbjct: 4   MERDLSHRRSFYFSGCMM-SPSCFPVHEEMEYSRIHYRSSSSDKTRRRWRNLLRRLVRDG 63

Query: 61  MST-YGSKSLSFQYDAVSYSQNFDEGSHYYESNRENEI 94
            S+ YGSK LSF YDAVSYSQNFD+G H+ ES     +
Sbjct: 64  KSSIYGSKPLSFHYDAVSYSQNFDDGCHHDESGHGRRV 100

[Close]

BLAST of CmaCh03G008550 vs. NCBI nr
Match: gi|255572587|ref|XP_002527227.1| (PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis])

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-16
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 13 LSGCAVASPACFPVHEGVEYSRIH------SGKRSGWRWRYLLRKWVKESMST-YGS--- 72
          LSGC ++SP+CFPVH+ +EYSRIH      S KRS  RWR+ +R+ V++  S+ YGS   
Sbjct: 12 LSGCMISSPSCFPVHDEMEYSRIHSSSGNSSNKRSTRRWRHFIRRLVRDGKSSLYGSSSS 71

Query: 73 -KSLSFQYDAVSYSQNFDEGSHYYES 88
           K LSF YDAVSYSQNFDEG H+ +S
Sbjct: 72 PKPLSFHYDAVSYSQNFDEGCHHEDS 97

[Close]

BLAST of CmaCh03G008550 vs. NCBI nr
Match: gi|823193428|ref|XP_012492065.1| (PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-15
Identity = 55/102 (53.92%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 1   MDRDLA--RRLLPYLSGCAVASPACFPVHEGVEYSRIH-----SGKRSGWRWRYLLRKWV 60
           M+RDL   RR   Y  GC + SP+CFPVHE ++YSRIH        R+  RWR LLR+ V
Sbjct: 4   MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRRRWRNLLRRLV 63

Query: 61  KE-SMSTYGSK-SLSFQYDAVSYSQNFDEGSHYYESNRENEI 94
           K+   S YGSK  LSF YDAVSYSQNFDEG H  ES     +
Sbjct: 64  KDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDESAHRRRV 105

[Close]

BLAST of CmaCh03G008550 vs. NCBI nr
Match: gi|763773206|gb|KJB40329.1| (hypothetical protein B456_007G058100 [Gossypium raimondii])

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-15
Identity = 54/95 (56.84%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MDRDLARRLLP-YLSGCAVASPACFPVHEGVEYSRIHSGKRSG-----WRWRYLLRKWVK 60
          M RDL+RR    Y SGC   SP+C P  E +EYSRIH    SG      RWR LLR+ VK
Sbjct: 4  MGRDLSRRRQSSYFSGCYTMSPSCLPGKEEMEYSRIHECGSSGSEKRRQRWRNLLRRLVK 63

Query: 61 ESMST-YGS-KSLSFQYDAVSYSQNFDEGSHYYES 88
          +  S+ YGS K LSF YDAVSYSQNFDEG H+ +S
Sbjct: 64 DGKSSIYGSSKPLSFHYDAVSYSQNFDEGFHHQQS 98

The following BLAST results are available for this feature:

BLAST of CmaCh03G008550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G008550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJW1_CUCSA	7.3e-37	79.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1	[more]
A0A061DHC4_THECC	2.6e-18	55.10	Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1	[more]
B9SMK8_RICCO	3.2e-16	56.98	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1	[more]
A0A0D2SIL6_GOSRA	7.1e-16	53.92	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1	[more]
A0A0D2S7M4_GOSRA	3.5e-15	56.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1	[more]

BLAST of CmaCh03G008550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh03G008550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193478\|gb\|KGN48682.1\|	1.0e-36	79.21	hypothetical protein Csa_6G497320 [Cucumis sativus]	[more]
gi\|590706403\|ref\|XP_007047712.1\|	3.7e-18	55.10	Uncharacterized protein TCM_000929 [Theobroma cacao]	[more]
gi\|255572587\|ref\|XP_002527227.1\|	4.6e-16	56.98	PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis]	[more]
gi\|823193428\|ref\|XP_012492065.1\|	1.0e-15	53.92	PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii]	[more]
gi\|763773206\|gb\|KJB40329.1\|	5.0e-15	56.84	hypothetical protein B456_007G058100 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G008550.1	CmaCh03G008550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 20..83 score: 6.3
None	No IPR available	PANTHER	PTHR33168:SF10	SUBFAMILY NOT NAMED	coord: 20..83 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G008550	Cucsa.103810	Cucumber (Gy14) v1	cgycmaB0231
CmaCh03G008550	Cla014089	Watermelon (97103) v1	cmawmB632
CmaCh03G008550	Csa6G497320	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G008550	MELO3C007699	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G008550	ClCG01G018220	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G008550	CSPI06G29580	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G008550	CmoCh07G005890	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G008550	Lsi01G008260	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G008550	Cp4.1LG19g10080	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G008550	MELO3C007699.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G008550	CsaV3_6G044800	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G008550	Cla97C01G017490	Watermelon (97103) v2	cmawmbB670
CmaCh03G008550	Bhi03G001333	Wax gourd	cmawgoB0797

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G008550	Watermelon (97103) v2	cmawmbB699
CmaCh03G008550	Wax gourd	cmawgoB0804
CmaCh03G008550	Wax gourd	cmawgoB0812
CmaCh03G008550	Cucurbita maxima (Rimu)	cmacmaB187
CmaCh03G008550	Cucurbita maxima (Rimu)	cmacmaB518
CmaCh03G008550	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G008550	Cucumber (Gy14) v1	cgycmaB0458
CmaCh03G008550	Cucumber (Gy14) v1	cgycmaB0872
CmaCh03G008550	Cucurbita moschata (Rifu)	cmacmoB635
CmaCh03G008550	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G008550	Cucurbita moschata (Rifu)	cmacmoB661
CmaCh03G008550	Wild cucumber (PI 183967)	cmacpiB660
CmaCh03G008550	Cucumber (Chinese Long) v2	cmacuB652
CmaCh03G008550	Melon (DHL92) v3.5.1	cmameB597
CmaCh03G008550	Watermelon (Charleston Gray)	cmawcgB601
CmaCh03G008550	Watermelon (97103) v1	cmawmB617
CmaCh03G008550	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G008550	Cucurbita pepo (Zucchini)	cmacpeB657
CmaCh03G008550	Cucurbita pepo (Zucchini)	cmacpeB688
CmaCh03G008550	Bottle gourd (USVL1VR-Ls)	cmalsiB614
CmaCh03G008550	Bottle gourd (USVL1VR-Ls)	cmalsiB620
CmaCh03G008550	Cucumber (Gy14) v2	cgybcmaB237
CmaCh03G008550	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G008550	Melon (DHL92) v3.6.1	cmamedB681
CmaCh03G008550	Melon (DHL92) v3.6.1	cmamedB688
CmaCh03G008550	Silver-seed gourd	carcmaB0003
CmaCh03G008550	Silver-seed gourd	carcmaB0082
CmaCh03G008550	Silver-seed gourd	carcmaB0567
CmaCh03G008550	Cucumber (Chinese Long) v3	cmacucB0779
CmaCh03G008550	Cucumber (Chinese Long) v3	cmacucB0787
CmaCh03G008550	Wax gourd	cmawgoB0798