CmoCh07G005890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G005890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr07 : 2661811 .. 2662125 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACAGATCTGGCCCGCCGCCGACTGCCCTACCTGACCGCCTGCGTTGCGGCTTCATCGCCATGCTTTCCGATCCACGAAGGCGTCGAGTACTCGCGCATCAACGGCGGCGGCGGCGGCGGCGGTGGCGGCAAAAGAATCGGCTGGAGGTGGCGGTATCTTCTGAGGAGGTGGATGAAGGATAGAATGAACATGTATGGGACGAAATCTCTGTCTTTCCAATACGATGCGGTTAGCTATTCGCAGAATTTTGACGACGGATGCCATTACGAGAGCAATCGAGAAAATGAGATTCGGATTTTGCGATATTGA

mRNA sequence

ATGGAGACAGATCTGGCCCGCCGCCGACTGCCCTACCTGACCGCCTGCGTTGCGGCTTCATCGCCATGCTTTCCGATCCACGAAGGCGTCGAGTACTCGCGCATCAACGGCGGCGGCGGCGGCGGCGGTGGCGGCAAAAGAATCGGCTGGAGGTGGCGGTATCTTCTGAGGAGGTGGATGAAGGATAGAATGAACATGTATGGGACGAAATCTCTGTCTTTCCAATACGATGCGGTTAGCTATTCGCAGAATTTTGACGACGGATGCCATTACGAGAGCAATCGAGAAAATGAGATTCGGATTTTGCGATATTGA

Coding sequence (CDS)

ATGGAGACAGATCTGGCCCGCCGCCGACTGCCCTACCTGACCGCCTGCGTTGCGGCTTCATCGCCATGCTTTCCGATCCACGAAGGCGTCGAGTACTCGCGCATCAACGGCGGCGGCGGCGGCGGCGGTGGCGGCAAAAGAATCGGCTGGAGGTGGCGGTATCTTCTGAGGAGGTGGATGAAGGATAGAATGAACATGTATGGGACGAAATCTCTGTCTTTCCAATACGATGCGGTTAGCTATTCGCAGAATTTTGACGACGGATGCCATTACGAGAGCAATCGAGAAAATGAGATTCGGATTTTGCGATATTGA

Homology

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BLAST of CmoCh07G005890 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-32
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 1


Query: 1   METDLARRRLPYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWM 60
           M+ DL  RRLPYL+ CV +S  CFPIHEGVEY+RI+GG G     KR GWRWRYLLR+W+
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA----KRSGWRWRYLLRKWV 60

Query: 61  KDRMNMYGTKSLSFQYDAVSYSQNFDDG--CHYESNRENEIRILR 104
           KD MN+YG+KSLSFQYDAVSYSQNFD+G  C+   +RENEI I R
Sbjct: 61  KDGMNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of CmoCh07G005890 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-16
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  METDLARRRLPYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWM 60
          ME DL+ RR  Y + C+ + S CFP+HE +EYSRI+         +R   RWR LLRR +
Sbjct: 4  MERDLSHRRSFYFSGCMMSPS-CFPVHEEMEYSRIHYRSSSSDKTRR---RWRNLLRRLV 63

Query: 61 KD-RMNMYGTKSLSFQYDAVSYSQNFDDGCHYESN 95
          +D + ++YG+K LSF YDAVSYSQNFDDGCH++ +
Sbjct: 64 RDGKSSIYGSKPLSFHYDAVSYSQNFDDGCHHDES 94

[Close]

BLAST of CmoCh07G005890 vs. TrEMBL
Match: B9SMK8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-15
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 13  LTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWMKD-RMNMYGTKS 72
           L+ C+ +S  CFP+H+ +EYSRI+   G     KR   RWR+ +RR ++D + ++YG+ S
Sbjct: 12  LSGCMISSPSCFPVHDEMEYSRIHSSSGNSSN-KRSTRRWRHFIRRLVRDGKSSLYGSSS 71

Query: 73  ----LSFQYDAVSYSQNFDDGCHYESNRENEIRILR 104
               LSF YDAVSYSQNFD+GCH+E +R    +ILR
Sbjct: 72  SPKPLSFHYDAVSYSQNFDEGCHHEDSRPYCPKILR 106

[Close]

BLAST of CmoCh07G005890 vs. TrEMBL
Match: A0A0D2SIL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 1  METDLARRRL--PYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRR 60
          ME DL  RR    Y   C   S  CFP+HE ++YSRI+    GG    R   RWR LLRR
Sbjct: 4  MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRR--RWRNLLRR 63

Query: 61 WMKD-RMNMYGTKS-LSFQYDAVSYSQNFDDGCHYESN 95
           +KD + ++YG+K  LSF YDAVSYSQNFD+GCH + +
Sbjct: 64 LVKDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDES 99

[Close]

BLAST of CmoCh07G005890 vs. TrEMBL
Match: W9RQT7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016119 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-13
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 1  METDLARRRLPYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWM 60
          ME+DL R    YL  C+   + CFPIHE +EY+R+    G  GG  R   RWR  L R +
Sbjct: 1  MESDLRRGTPSYLPGCMTPPT-CFPIHEEMEYTRL----GHRGGSSRRNRRWRSFLWRLV 60

Query: 61 KDRMNMY-----GTKSLSFQYDAVSYSQNFDDGCH 91
          +D  NM        KS+SF YDAVSYSQNFD+GCH
Sbjct: 61 RDSKNMGFCGIPNQKSISFNYDAVSYSQNFDEGCH 90

[Close]

BLAST of CmoCh07G005890 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-32
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 1


Query: 1   METDLARRRLPYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWM 60
           M+ DL  RRLPYL+ CV +S  CFPIHEGVEY+RI+GG G     KR GWRWRYLLR+W+
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA----KRSGWRWRYLLRKWV 60

Query: 61  KDRMNMYGTKSLSFQYDAVSYSQNFDDG--CHYESNRENEIRILR 104
           KD MN+YG+KSLSFQYDAVSYSQNFD+G  C+   +RENEI I R
Sbjct: 61  KDGMNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of CmoCh07G005890 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-16
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  METDLARRRLPYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWM 60
          ME DL+ RR  Y + C+ + S CFP+HE +EYSRI+         +R   RWR LLRR +
Sbjct: 4  MERDLSHRRSFYFSGCMMSPS-CFPVHEEMEYSRIHYRSSSSDKTRR---RWRNLLRRLV 63

Query: 61 KD-RMNMYGTKSLSFQYDAVSYSQNFDDGCHYESN 95
          +D + ++YG+K LSF YDAVSYSQNFDDGCH++ +
Sbjct: 64 RDGKSSIYGSKPLSFHYDAVSYSQNFDDGCHHDES 94

[Close]

BLAST of CmoCh07G005890 vs. NCBI nr
Match: gi|255572587|ref|XP_002527227.1| (PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis])

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-15
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 13  LTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWMKD-RMNMYGTKS 72
           L+ C+ +S  CFP+H+ +EYSRI+   G     KR   RWR+ +RR ++D + ++YG+ S
Sbjct: 12  LSGCMISSPSCFPVHDEMEYSRIHSSSGNSSN-KRSTRRWRHFIRRLVRDGKSSLYGSSS 71

Query: 73  ----LSFQYDAVSYSQNFDDGCHYESNRENEIRILR 104
               LSF YDAVSYSQNFD+GCH+E +R    +ILR
Sbjct: 72  SPKPLSFHYDAVSYSQNFDEGCHHEDSRPYCPKILR 106

[Close]

BLAST of CmoCh07G005890 vs. NCBI nr
Match: gi|823193428|ref|XP_012492065.1| (PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 1  METDLARRRL--PYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRR 60
          ME DL  RR    Y   C   S  CFP+HE ++YSRI+    GG    R   RWR LLRR
Sbjct: 4  MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRR--RWRNLLRR 63

Query: 61 WMKD-RMNMYGTKS-LSFQYDAVSYSQNFDDGCHYESN 95
           +KD + ++YG+K  LSF YDAVSYSQNFD+GCH + +
Sbjct: 64 LVKDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDES 99

[Close]

BLAST of CmoCh07G005890 vs. NCBI nr
Match: gi|703132451|ref|XP_010105128.1| (hypothetical protein L484_016119 [Morus notabilis])

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-13
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 1  METDLARRRLPYLTACVAASSPCFPIHEGVEYSRINGGGGGGGGGKRIGWRWRYLLRRWM 60
          ME+DL R    YL  C+   + CFPIHE +EY+R+    G  GG  R   RWR  L R +
Sbjct: 1  MESDLRRGTPSYLPGCMTPPT-CFPIHEEMEYTRL----GHRGGSSRRNRRWRSFLWRLV 60

Query: 61 KDRMNMY-----GTKSLSFQYDAVSYSQNFDDGCH 91
          +D  NM        KS+SF YDAVSYSQNFD+GCH
Sbjct: 61 RDSKNMGFCGIPNQKSISFNYDAVSYSQNFDEGCH 90

The following BLAST results are available for this feature:

BLAST of CmoCh07G005890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G005890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJW1_CUCSA	2.6e-32	67.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1	[more]
A0A061DHC4_THECC	2.6e-16	51.58	Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1	[more]
B9SMK8_RICCO	6.4e-15	47.92	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1	[more]
A0A0D2SIL6_GOSRA	1.9e-14	51.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1	[more]
W9RQT7_9ROSA	4.6e-13	49.47	Uncharacterized protein OS=Morus notabilis GN=L484_016119 PE=4 SV=1	[more]

BLAST of CmoCh07G005890 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh07G005890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193478\|gb\|KGN48682.1\|	3.7e-32	67.62	hypothetical protein Csa_6G497320 [Cucumis sativus]	[more]
gi\|590706403\|ref\|XP_007047712.1\|	3.7e-16	51.58	Uncharacterized protein TCM_000929 [Theobroma cacao]	[more]
gi\|255572587\|ref\|XP_002527227.1\|	9.2e-15	47.92	PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis]	[more]
gi\|823193428\|ref\|XP_012492065.1\|	2.7e-14	51.02	PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii]	[more]
gi\|703132451\|ref\|XP_010105128.1\|	6.6e-13	49.47	hypothetical protein L484_016119 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G005890.1	CmoCh07G005890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 23..96 score: 3.0
None	No IPR available	PANTHER	PTHR33168:SF10	SUBFAMILY NOT NAMED	coord: 23..96 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G005890	Cucsa.103810	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G005890	CmaCh03G008550	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G005890	Cla014089	Watermelon (97103) v1	cmowmB816
CmoCh07G005890	Csa6G497320	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G005890	MELO3C007699	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G005890	ClCG01G018220	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G005890	CSPI06G29580	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G005890	Lsi01G008260	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G005890	Cp4.1LG19g10080	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G005890	MELO3C007699.2	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G005890	CsaV3_6G044800	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G005890	Cla97C01G017490	Watermelon (97103) v2	cmowmbB849
CmoCh07G005890	Bhi03G001333	Wax gourd	cmowgoB1058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G005890	Cucumber (Gy14) v1	cgycmoB0464
CmoCh07G005890	Cucurbita maxima (Rimu)	cmacmoB205
CmoCh07G005890	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G005890	Wild cucumber (PI 183967)	cmocpiB850
CmoCh07G005890	Cucumber (Chinese Long) v2	cmocuB840
CmoCh07G005890	Melon (DHL92) v3.5.1	cmomeB774
CmoCh07G005890	Watermelon (Charleston Gray)	cmowcgB776
CmoCh07G005890	Watermelon (97103) v1	cmowmB806
CmoCh07G005890	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G005890	Cucurbita pepo (Zucchini)	cmocpeB810
CmoCh07G005890	Cucurbita pepo (Zucchini)	cmocpeB830
CmoCh07G005890	Bottle gourd (USVL1VR-Ls)	cmolsiB793
CmoCh07G005890	Cucumber (Gy14) v2	cgybcmoB251
CmoCh07G005890	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G005890	Melon (DHL92) v3.6.1	cmomedB880
CmoCh07G005890	Silver-seed gourd	carcmoB0005
CmoCh07G005890	Silver-seed gourd	carcmoB0088
CmoCh07G005890	Silver-seed gourd	carcmoB0554
CmoCh07G005890	Cucumber (Chinese Long) v3	cmocucB0993
CmoCh07G005890	Watermelon (97103) v2	cmowmbB875
CmoCh07G005890	Wax gourd	cmowgoB1069
CmoCh07G005890	Cucurbita moschata (Rifu)	cmocmoB165
CmoCh07G005890	Cucurbita moschata (Rifu)	cmocmoB455