Lsi01G008260 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G008260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_8
Location	chr01 : 6554194 .. 6554499 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA

mRNA sequence

ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA

Coding sequence (CDS)

ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA

Protein sequence

MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEIGISR

Homology

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BLAST of Lsi01G008260 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-44
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDS 60
           M+RDLGCRRLPYLSGCVP+SPACFPIHEGVEY+RIHGG G  KRSGWRWRYLLR+WVKD 
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA-KRSGWRWRYLLRKWVKDG 60

Query: 61  MSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGISR 102
           M+IYGSKSLSFQYDAVSYSQNFDEGSR YE+  RENEIGISR
Sbjct: 61  MNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of Lsi01G008260 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD- 60
           MERDL  RR  Y SGC+  SP+CFP+HE +EYSRIH       ++  RWR LLRR V+D 
Sbjct: 4   MERDLSHRRSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRRRWRNLLRRLVRDG 63

Query: 61  SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEI 98
             SIYGSK LSF YDAVSYSQNFD+G  + E+     +
Sbjct: 64  KSSIYGSKPLSFHYDAVSYSQNFDDGCHHDESGHGRRV 100

[Close]

BLAST of Lsi01G008260 vs. TrEMBL
Match: A0A0D2SIL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 1


Query: 1   MERDLGCRRL--PYLSGCVPASPACFPIHEGVEYSRIHG-GGGGGKRSGWRWRYLLRRWV 60
           MERDL  RR    Y  GC   SP+CFP+HE ++YSRIH    GG  R+  RWR LLRR V
Sbjct: 4   MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRRRWRNLLRRLV 63

Query: 61  KD-SMSIYGSK-SLSFQYDAVSYSQNFDEGSRYYENSRENEI 98
           KD   S+YGSK  LSF YDAVSYSQNFDEG    E++    +
Sbjct: 64  KDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDESAHRRRV 105

[Close]

BLAST of Lsi01G008260 vs. TrEMBL
Match: B9SMK8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 1


Query: 1  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIH--GGGGGGKRSGWRWRYLLRRWVK 60
          MERD    R   LSGC+ +SP+CFP+H+ +EYSRIH   G    KRS  RWR+ +RR V+
Sbjct: 1  MERD-HLPRSSCLSGCMISSPSCFPVHDEMEYSRIHSSSGNSSNKRSTRRWRHFIRRLVR 60

Query: 61 D-SMSIYGS----KSLSFQYDAVSYSQNFDEGSRYYENSR 94
          D   S+YGS    K LSF YDAVSYSQNFDEG  ++E+SR
Sbjct: 61 DGKSSLYGSSSSPKPLSFHYDAVSYSQNFDEGC-HHEDSR 98

[Close]

BLAST of Lsi01G008260 vs. TrEMBL
Match: A0A0D2S7M4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.4e-16
Identity = 55/95 (57.89%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MERDLGCRRLP-YLSGCVPASPACFPIHEGVEYSRIHG-GGGGGKRSGWRWRYLLRRWVK 60
          M RDL  RR   Y SGC   SP+C P  E +EYSRIH  G  G ++   RWR LLRR VK
Sbjct: 4  MGRDLSRRRQSSYFSGCYTMSPSCLPGKEEMEYSRIHECGSSGSEKRRQRWRNLLRRLVK 63

Query: 61 DSMS-IYGS-KSLSFQYDAVSYSQNFDEGSRYYEN 92
          D  S IYGS K LSF YDAVSYSQNFDEG  + ++
Sbjct: 64 DGKSSIYGSSKPLSFHYDAVSYSQNFDEGFHHQQS 98

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDS 60
           M+RDLGCRRLPYLSGCVP+SPACFPIHEGVEY+RIHGG G  KRSGWRWRYLLR+WVKD 
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA-KRSGWRWRYLLRKWVKDG 60

Query: 61  MSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGISR 102
           M+IYGSKSLSFQYDAVSYSQNFDEGSR YE+  RENEIGISR
Sbjct: 61  MNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD- 60
           MERDL  RR  Y SGC+  SP+CFP+HE +EYSRIH       ++  RWR LLRR V+D 
Sbjct: 4   MERDLSHRRSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRRRWRNLLRRLVRDG 63

Query: 61  SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEI 98
             SIYGSK LSF YDAVSYSQNFD+G  + E+     +
Sbjct: 64  KSSIYGSKPLSFHYDAVSYSQNFDDGCHHDESGHGRRV 100

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: gi|823193428|ref|XP_012492065.1| (PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 1


Query: 1   MERDLGCRRL--PYLSGCVPASPACFPIHEGVEYSRIHG-GGGGGKRSGWRWRYLLRRWV 60
           MERDL  RR    Y  GC   SP+CFP+HE ++YSRIH    GG  R+  RWR LLRR V
Sbjct: 4   MERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRRRWRNLLRRLV 63

Query: 61  KD-SMSIYGSK-SLSFQYDAVSYSQNFDEGSRYYENSRENEI 98
           KD   S+YGSK  LSF YDAVSYSQNFDEG    E++    +
Sbjct: 64  KDGKTSLYGSKRPLSFHYDAVSYSQNFDEGCHRDESAHRRRV 105

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: gi|255572587|ref|XP_002527227.1| (PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 1


Query: 1  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIH--GGGGGGKRSGWRWRYLLRRWVK 60
          MERD    R   LSGC+ +SP+CFP+H+ +EYSRIH   G    KRS  RWR+ +RR V+
Sbjct: 1  MERD-HLPRSSCLSGCMISSPSCFPVHDEMEYSRIHSSSGNSSNKRSTRRWRHFIRRLVR 60

Query: 61 D-SMSIYGS----KSLSFQYDAVSYSQNFDEGSRYYENSR 94
          D   S+YGS    K LSF YDAVSYSQNFDEG  ++E+SR
Sbjct: 61 DGKSSLYGSSSSPKPLSFHYDAVSYSQNFDEGC-HHEDSR 98

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: gi|763773206|gb|KJB40329.1| (hypothetical protein B456_007G058100 [Gossypium raimondii])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 55/95 (57.89%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1  MERDLGCRRLP-YLSGCVPASPACFPIHEGVEYSRIHG-GGGGGKRSGWRWRYLLRRWVK 60
          M RDL  RR   Y SGC   SP+C P  E +EYSRIH  G  G ++   RWR LLRR VK
Sbjct: 4  MGRDLSRRRQSSYFSGCYTMSPSCLPGKEEMEYSRIHECGSSGSEKRRQRWRNLLRRLVK 63

Query: 61 DSMS-IYGS-KSLSFQYDAVSYSQNFDEGSRYYEN 92
          D  S IYGS K LSF YDAVSYSQNFDEG  + ++
Sbjct: 64 DGKSSIYGSSKPLSFHYDAVSYSQNFDEGFHHQQS 98

The following BLAST results are available for this feature:

BLAST of Lsi01G008260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G008260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJW1_CUCSA	1.7e-44	87.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1	[more]
A0A061DHC4_THECC	1.1e-19	56.12	Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1	[more]
A0A0D2SIL6_GOSRA	1.0e-17	55.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1	[more]
B9SMK8_RICCO	3.0e-17	56.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1	[more]
A0A0D2S7M4_GOSRA	7.4e-16	57.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1	[more]

BLAST of Lsi01G008260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G008260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193478\|gb\|KGN48682.1\|	2.4e-44	87.25	hypothetical protein Csa_6G497320 [Cucumis sativus]	[more]
gi\|590706403\|ref\|XP_007047712.1\|	1.6e-19	56.12	Uncharacterized protein TCM_000929 [Theobroma cacao]	[more]
gi\|823193428\|ref\|XP_012492065.1\|	1.5e-17	55.88	PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii]	[more]
gi\|255572587\|ref\|XP_002527227.1\|	4.3e-17	56.00	PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis]	[more]
gi\|763773206\|gb\|KJB40329.1\|	1.1e-15	57.89	hypothetical protein B456_007G058100 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008260.1	Lsi01G008260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 17..85 score: 2.3
None	No IPR available	PANTHER	PTHR33168:SF10	SUBFAMILY NOT NAMED	coord: 17..85 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G008260	Csa6G497320	Cucumber (Chinese Long) v2	culsiB434
Lsi01G008260	CSPI06G29580	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G008260	Cucsa.103810	Cucumber (Gy14) v1	cgylsiB125
Lsi01G008260	CmaCh03G008550	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G008260	CmoCh07G005890	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G008260	Cla014089	Watermelon (97103) v1	lsiwmB144
Lsi01G008260	MELO3C007699	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G008260	ClCG01G018220	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G008260	MELO3C007699.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G008260	Cla97C01G017490	Watermelon (97103) v2	lsiwmbB115
Lsi01G008260	Bhi03G001333	Wax gourd	lsiwgoB175
Lsi01G008260	Cp4.1LG19g10080	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G008260	CsaV3_6G044800	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G008260	Bottle gourd (USVL1VR-Ls)	lsilsiB075
Lsi01G008260	Bottle gourd (USVL1VR-Ls)	lsilsiB079
Lsi01G008260	Bottle gourd (USVL1VR-Ls)	lsilsiB084
Lsi01G008260	Cucumber (Gy14) v1	cgylsiB259
Lsi01G008260	Cucumber (Gy14) v1	cgylsiB502
Lsi01G008260	Cucurbita maxima (Rimu)	cmalsiB164
Lsi01G008260	Cucurbita maxima (Rimu)	cmalsiB718
Lsi01G008260	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G008260	Cucurbita moschata (Rifu)	cmolsiB002
Lsi01G008260	Cucurbita moschata (Rifu)	cmolsiB155
Lsi01G008260	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G008260	Cucurbita moschata (Rifu)	cmolsiB707
Lsi01G008260	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G008260	Cucurbita pepo (Zucchini)	cpelsiB079
Lsi01G008260	Cucurbita pepo (Zucchini)	cpelsiB666
Lsi01G008260	Wild cucumber (PI 183967)	cpilsiB102
Lsi01G008260	Wild cucumber (PI 183967)	cpilsiB165
Lsi01G008260	Cucumber (Chinese Long) v2	culsiB106
Lsi01G008260	Cucumber (Chinese Long) v2	culsiB166
Lsi01G008260	Melon (DHL92) v3.5.1	lsimeB136
Lsi01G008260	Melon (DHL92) v3.5.1	lsimeB143
Lsi01G008260	Watermelon (Charleston Gray)	lsiwcgB122
Lsi01G008260	Watermelon (Charleston Gray)	lsiwcgB152
Lsi01G008260	Watermelon (97103) v1	lsiwmB131
Lsi01G008260	Watermelon (97103) v1	lsiwmB166
Lsi01G008260	Cucumber (Gy14) v2	cgyblsiB094
Lsi01G008260	Cucumber (Gy14) v2	cgyblsiB151
Lsi01G008260	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G008260	Melon (DHL92) v3.6.1	lsimedB150
Lsi01G008260	Melon (DHL92) v3.6.1	lsimedB143
Lsi01G008260	Silver-seed gourd	carlsiB001
Lsi01G008260	Silver-seed gourd	carlsiB053
Lsi01G008260	Silver-seed gourd	carlsiB364
Lsi01G008260	Silver-seed gourd	carlsiB574
Lsi01G008260	Cucumber (Chinese Long) v3	cuclsiB114
Lsi01G008260	Cucumber (Chinese Long) v3	cuclsiB183
Lsi01G008260	Watermelon (97103) v2	lsiwmbB120
Lsi01G008260	Watermelon (97103) v2	lsiwmbB148
Lsi01G008260	Wax gourd	lsiwgoB187
Lsi01G008260	Wax gourd	lsiwgoB197