WMU38910 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU38910
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 28124136 .. 28124929 (+)
Sequence length798
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TTTTAAAATGGAGAACCAATAATTAGGTTAGGCCCATAAAGTAGGTGGAACGAAACAGAATAGGCCACAGAGCATCCCATTGCAGACTGAAGCATATGGTCAAGTGGATCTCACTTTTCTCTTTCATTAATATCTCTTTTGACGGAACCCTCCATGAAAATCTGATCCTTCTTCTTTTTTCATTTTTTCTTTCCTCTTTTTCGCTTTCGGTTTCATCGATTCGCCGATATGGAGAGAGATCTCGGCTGCCGTTGCCGTCGACTGCCTTACCTCTCCGGCTGCGTTCCCGCTTCTCCGGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGCGGCGCTGGAGGTGGCAAAAGAAGCGGCTGGAGGTGGCGATATCTTCTGAGGAGGTGGGTGAAAGATAGTATGAGTATGTATGGGTCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCCCAGAATTTTTGACGAGGGGAGCCGTTATTGTGAGAGCAATCGAGAAAGTGAGATTGGGATTTCGAGATGAACGATTTAATTAATCGTCGCTGTAGATGGATCGTAGGGTTTCTGAGTTGAATTGCAATTTTCTTTTCATATATATATAAAAATTTTTTTATATAGTTGGTGAAATTTTGGATGTGTTTGAGATTTATGAATAAATGGATGTTGGGAGTGTGGAGATTAGAGATTTGTAGATCTACGAAAAAAGATGAACATTCTTGTGTGTACAGTTTTCCAGATGACAGGAAGCGGCCATTGTTTGGCCGCATCGAC
Homology
[Close]
BLAST of WMU38910 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-32
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 229 MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLLRR 288
           M+RDLGCR  RLPYLSGCVP+SPACFPIHEGVEY+RIH         KRSGWRWRYLLR+
Sbjct: 1   MDRDLGCR--RLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA----KRSGWRWRYLLRK 60

Query: 289 WVKDSMSMYGSKSLSFQYDAVSYSQNF*RG 348
           WVKD M++YGSKSLSFQYDAVSYSQNF  G
Sbjct: 61  WVKDGMNIYGSKSLSFQYDAVSYSQNFDEG 84

Query: 349  408
           
Sbjct: 121  84

Query: 409  468
           
Sbjct: 181  84

Query: 469  499
           
Sbjct: 241  84

[Close]
BLAST of WMU38910 vs. TrEMBL
Match: A0A0D2SIL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.7e-15
Identity = 52/94 (55.32%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 223 ADMERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLL 282
           ++MERDL  R R   Y  GC   SP+CFP+HE ++YSRIH          R+  RWR LL
Sbjct: 2   SEMERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIH--HCSSGGDNRTRRRWRNLL 61

Query: 283 RRWVKD-SMSMYGSK-SLSFQYDAVSYSQNF*RG 342
           RR VKD   S+YGSK  LSF YDAVSYSQNF  G
Sbjct: 62  RRLVKDGKTSLYGSKRPLSFHYDAVSYSQNFDEG 93

Query: 343  402
           
Sbjct: 122  93

Query: 403  462
           
Sbjct: 182  93

Query: 463  499
           
Sbjct: 242  93

[Close]
BLAST of WMU38910 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.7e-15
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 1 

Query: 223 ADMERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLL 282
           + MERDL  R  R  Y SGC+  SP+CFP+HE +EYSRIH         +R   RWR LL
Sbjct: 2   SQMERDLSHR--RSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRR---RWRNLL 61

Query: 283 RRWVKDSMS-MYGSKSLSFQYDAVSYSQNF 342
           RR V+D  S +YGSK LSF YDAVSYSQNF
Sbjct: 62  RRLVRDGKSSIYGSKPLSFHYDAVSYSQNF 85

Query: 343  402
           
Sbjct: 122  85

Query: 403  462
           
Sbjct: 182  85

Query: 463  490
           
Sbjct: 242  85

[Close]
BLAST of WMU38910 vs. TrEMBL
Match: B9SMK8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 229 MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLLRR 288
           MERD      R   LSGC+ +SP+CFP+H+ +EYSRIH         KRS  RWR+ +RR
Sbjct: 1   MERD---HLPRSSCLSGCMISSPSCFPVHDEMEYSRIH-SSSGNSSNKRSTRRWRHFIRR 60

Query: 289 WVKD-SMSMYGS----KSLSFQYDAVSYSQNF*RG 348
            V+D   S+YGS    K LSF YDAVSYSQNF  G
Sbjct: 61  LVRDGKSSLYGSSSSPKPLSFHYDAVSYSQNFDEG 91

Query: 349  408
           
Sbjct: 121  91

Query: 409  468
           
Sbjct: 181  91

Query: 469  499
           
Sbjct: 241  91

[Close]
BLAST of WMU38910 vs. TrEMBL
Match: A0A0D2S7M4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.0e-13
Identity = 51/94 (54.26%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 223 ADMERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLL 282
           ++M RDL  R R+  Y SGC   SP+C P  E +EYSRIH         +R   RWR LL
Sbjct: 2   SEMGRDLSRR-RQSSYFSGCYTMSPSCLPGKEEMEYSRIHECGSSGSEKRRQ--RWRNLL 61

Query: 283 RRWVKD-SMSMYG-SKSLSFQYDAVSYSQNF*RG 342
           RR VKD   S+YG SK LSF YDAVSYSQNF  G
Sbjct: 62  RRLVKDGKSSIYGSSKPLSFHYDAVSYSQNFDEG 92

Query: 343  402
           
Sbjct: 122  92

Query: 403  462
           
Sbjct: 182  92

Query: 463  499
           
Sbjct: 242  92

[Close]
BLAST of WMU38910 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 7.3e-32
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 229 MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLLRR 288
           M+RDLGCR  RLPYLSGCVP+SPACFPIHEGVEY+RIH         KRSGWRWRYLLR+
Sbjct: 1   MDRDLGCR--RLPYLSGCVPSSPACFPIHEGVEYTRIHGGAGA----KRSGWRWRYLLRK 60

Query: 289 WVKDSMSMYGSKSLSFQYDAVSYSQNF*RG 348
           WVKD M++YGSKSLSFQYDAVSYSQNF  G
Sbjct: 61  WVKDGMNIYGSKSLSFQYDAVSYSQNFDEG 84

Query: 349  408
           
Sbjct: 121  84

Query: 409  468
           
Sbjct: 181  84

Query: 469  499
           
Sbjct: 241  84

[Close]
BLAST of WMU38910 vs. NCBI nr
Match: gi|823193428|ref|XP_012492065.1| (PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii])

HSP 1 Score: 90.1 bits (222), Expect = 6.2e-15
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 223 ADMERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLL 282
           ++MERDL  R R   Y  GC   SP+CFP+HE ++YSRIH          R   RWR LL
Sbjct: 2   SEMERDLINRRRGSSYFCGCYMMSPSCFPVHEEMDYSRIHHCSSGGDNRTRR--RWRNLL 61

Query: 283 RRWVKDSM-SMYGSKS-LSFQYDAVSYSQNF*RG 342
           RR VKD   S+YGSK  LSF YDAVSYSQNF  G
Sbjct: 62  RRLVKDGKTSLYGSKRPLSFHYDAVSYSQNFDEG 93

Query: 343  402
           
Sbjct: 122  93

Query: 403  462
           
Sbjct: 182  93

Query: 463  499
           
Sbjct: 242  93

[Close]
BLAST of WMU38910 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 6.2e-15
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 1 

Query: 223 ADMERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLL 282
           + MERDL  R  R  Y SGC+  SP+CFP+HE +EYSRIH         +R   RWR LL
Sbjct: 2   SQMERDLSHR--RSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRR---RWRNLL 61

Query: 283 RRWVKDSMS-MYGSKSLSFQYDAVSYSQNF 342
           RR V+D  S +YGSK LSF YDAVSYSQNF
Sbjct: 62  RRLVRDGKSSIYGSKPLSFHYDAVSYSQNF 85

Query: 343  402
           
Sbjct: 122  85

Query: 403  462
           
Sbjct: 182  85

Query: 463  490
           
Sbjct: 242  85

[Close]
BLAST of WMU38910 vs. NCBI nr
Match: gi|255572587|ref|XP_002527227.1| (PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis])

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 229 MERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLLRR 288
           MERD      R   LSGC+ +SP+CFP+H+ +EYSRIH         KRS  RWR+ +RR
Sbjct: 1   MERD---HLPRSSCLSGCMISSPSCFPVHDEMEYSRIH-SSSGNSSNKRSTRRWRHFIRR 60

Query: 289 WVKD-SMSMYGS----KSLSFQYDAVSYSQNF*RG 348
            V+D   S+YGS    K LSF YDAVSYSQNF  G
Sbjct: 61  LVRDGKSSLYGSSSSPKPLSFHYDAVSYSQNFDEG 91

Query: 349  408
           
Sbjct: 121  91

Query: 409  468
           
Sbjct: 181  91

Query: 469  499
           
Sbjct: 241  91

[Close]
BLAST of WMU38910 vs. NCBI nr
Match: gi|763773206|gb|KJB40329.1| (hypothetical protein B456_007G058100 [Gossypium raimondii])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 51/94 (54.26%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 223 ADMERDLGCRCRRLPYLSGCVPASPACFPIHEGVEYSRIHXXXXXXXXXKRSGWRWRYLL 282
           ++M RDL  R R+  Y SGC   SP+C P  E +EYSRIH         +R   RWR LL
Sbjct: 2   SEMGRDLSRR-RQSSYFSGCYTMSPSCLPGKEEMEYSRIHECGSSGSEKRRQ--RWRNLL 61

Query: 283 RRWVKD-SMSMYG-SKSLSFQYDAVSYSQNF*RG 342
           RR VKD   S+YG SK LSF YDAVSYSQNF  G
Sbjct: 62  RRLVKDGKSSIYGSSKPLSFHYDAVSYSQNFDEG 92

Query: 343  402
           
Sbjct: 122  92

Query: 403  462
           
Sbjct: 182  92

Query: 463  499
           
Sbjct: 242  92

The following BLAST results are available for this feature:
BLAST of WMU38910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJW1_CUCSA5.1e-3277.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1[more]
A0A0D2SIL6_GOSRA5.7e-1555.32Uncharacterized protein OS=Gossypium raimondii GN=B456_007G230900 PE=4 SV=1[more]
A0A061DHC4_THECC5.7e-1557.78Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1[more]
B9SMK8_RICCO2.4e-1352.63Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1[more]
A0A0D2S7M4_GOSRA9.0e-1354.26Uncharacterized protein OS=Gossypium raimondii GN=B456_007G058100 PE=4 SV=1[more]
BLAST of WMU38910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193478|gb|KGN48682.1|7.3e-3277.78hypothetical protein Csa_6G497320 [Cucumis sativus][more]
gi|823193428|ref|XP_012492065.1|6.2e-1555.32PREDICTED: uncharacterized protein LOC105804117 [Gossypium raimondii][more]
gi|590706403|ref|XP_007047712.1|6.2e-1557.78Uncharacterized protein TCM_000929 [Theobroma cacao][more]
gi|255572587|ref|XP_002527227.1|3.4e-1352.63PREDICTED: uncharacterized protein LOC8259684 [Ricinus communis][more]
gi|763773206|gb|KJB40329.1|7.6e-1354.26hypothetical protein B456_007G058100 [Gossypium raimondii][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014089Cla014089gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0073250S1_0073250EST
S1_0083116S1_0083116EST
S1_0140712S1_0140712EST
S1_0145112S1_0145112EST
S1_0145778S1_0145778EST
S1_0158989S1_0158989EST
S2_0020681S2_0020681EST
S2_0028688S2_0028688EST
S2_0059628S2_0059628EST
S2_0114167S2_0114167EST
S2_0133852S2_0133852EST
S2_0161814S2_0161814EST
S2_0166075S2_0166075EST
S3_0013546S3_0013546EST
S3_0051262S3_0051262EST
S3_0074850S3_0074850EST
S3_0107702S3_0107702EST
S3_0111553S3_0111553EST
S3_0116486S3_0116486EST
S3_0155671S3_0155671EST
S3_0165049S3_0165049EST
S3_0168278S3_0168278EST
S4_0046134S4_0046134EST
S4_0130923S4_0130923EST
S4_0162069S4_0162069EST