Cla013707 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013707
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger RING-type (AHRD V1 ***- A2Q3Q2_MEDTR)
Location	Chr8 : 17433940 .. 17435179 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGGGGGTGAACTTGGTGATGACAGTGATTGGATTCACTGTGAGCACTTTGTTCATCGTGTTCGTCTGTACAAGGCTTGTTTGTGCTAGGATTCATCTCAATGCTTCAAGGCGTTCCTTCTCAATCGCTTCTAGATCTGATCTCAGTGGGGTGAGTATGTTTTTTCTCTTATTTAATTTGCTTCCAGATTTGATGTGGATATATGTGTTTTAATTTTCTACTGGTTAGTAGCAAAAGGTGGGATAATTTCCCTTCTACTTCTTCTCCATTTATGTTCCCTTTCTGGGTTTGATTTTGTATGCTAATTCATATGCCATGTTTATCGCTGGAAAGTGGATATGAATCATATGATTGCTTTTCTGCATTATAGTTATAGTGTTACCACTTCAATACTTGCCTTTCTGCCATTTTATTGAAGTAACAGCATTCATTTCATGCAGTGGTATTACTTCGTTTTGATTTTTCCTCCTTTTGGCTCTCTCTTTTTGGTCTGTTGGGTCAGTTTCATAGGTCTGCGAATGCGTTTTCTTGATAGCCTTTTTGCATTGTCGCTTTTAGTCAAATACTAGTGGATTGGGAGCCTCGAAAGAAACAAAAAGGATCTCTTATACTTAATTCTTGTTTGTTCTCATAGGCAGTGGCAGTGGTTGTGCATTTCTATTTCACATTGGTATTTGTCTATTCCTTTTTTTTTTCCCCCTAATATACTACTTTTTAGATTTTTCTCAGGCTTTATGTTGATTTGTTGGTTTGTCTGTTTTTTCTATATAATATATATTGAGAAAAAATCGAAAGCGTACACAGGCAAACAAAAAGGAAAAGCCCACAAAAATTACTTAAACTACAAGATAGGGCTCCAGTAAAGAGAAATTAGACCTAAAGAATAATTACAACCGAGACTAGAAGTTGAGGGTATGAGAGAAACAAAGAATCTAACAAGGAAGAACTCTTACGCCCTCGGAAGATTTTTTGTTTCTCGTCCCCATGAAGTAGCACATACACCAGCCTTTACTATGATTTGTTTGTGGATGTCTCTTTATTTACACGTTGAATTTCTTTGACACAGTTGGAACGGGGATTACACGGTGTAGAGCCCATGGTTGTAGCCAACTTTCCAACTAAGAAGTACAGTGATGATTACTTCTCATCTATGAGATATGCTCAGTATGTGCCCCTTCAATTCACAGTTCCTCGCTGCATTGGTTTTCATGATTTTTCAGGAAAATCCCTTTGA

mRNA sequence

ATGTCTTCGGGGGTGAACTTGGTGATGACAGTGATTGGATTCACTGTGAGCACTTTGTTCATCGTGTTCGTCTGTACAAGGCTTGTTTGTGCTAGGATTCATCTCAATGCTTCAAGGCGTTCCTTCTCAATCGCTTCTAGATCTGATCTCAGTGGGTTGGAACGGGGATTACACGGTGTAGAGCCCATGGTTGTAGCCAACTTTCCAACTAAGAAGTACAGTGATGATTACTTCTCATCTATGAGATATGCTCAGTATGTGCCCCTTCAATTCACAGTTCCTCGCTGCATTGGTTTTCATGATTTTTCAGGAAAATCCCTTTGA

Coding sequence (CDS)

ATGTCTTCGGGGGTGAACTTGGTGATGACAGTGATTGGATTCACTGTGAGCACTTTGTTCATCGTGTTCGTCTGTACAAGGCTTGTTTGTGCTAGGATTCATCTCAATGCTTCAAGGCGTTCCTTCTCAATCGCTTCTAGATCTGATCTCAGTGGGTTGGAACGGGGATTACACGGTGTAGAGCCCATGGTTGTAGCCAACTTTCCAACTAAGAAGTACAGTGATGATTACTTCTCATCTATGAGATATGCTCAGTATGTGCCCCTTCAATTCACAGTTCCTCGCTGCATTGGTTTTCATGATTTTTCAGGAAAATCCCTTTGA

Protein sequence

MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGVEPMVVANFPTKKYSDDYFSSMRYAQYVPLQFTVPRCIGFHDFSGKSL

Homology

[Close]

BLAST of Cla013707 vs. TrEMBL
Match: A0A0A0KB30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044540 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.8e-37
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSF IASRSDLSGLERGLHGV
Sbjct: 2  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFPIASRSDLSGLERGLHGV 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EPMVVANFPTKKYSDDYFSSM+ AQ
Sbjct: 62 EPMVVANFPTKKYSDDYFSSMQNAQ 86

[Close]

BLAST of Cla013707 vs. TrEMBL
Match: A0A164ZDK0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019015 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-31
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VST+FIVFVCTRL+CARI LNASRRSF I SRSDLS LERGLHG+
Sbjct: 2  ISSGINLVMTVIGFAVSTMFIVFVCTRLICARIQLNASRRSFHITSRSDLSILERGLHGL 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQYV 88
          EP+VVANFPTKKYSD +FSS    QYV
Sbjct: 62 EPLVVANFPTKKYSDQFFSSAEDTQYV 88

[Close]

BLAST of Cla013707 vs. TrEMBL
Match: W9SEZ7_9ROSA (RING-H2 finger protein ATL32 OS=Morus notabilis GN=L484_016785 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-31
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VSTLFIVFVCTRLVCARIHLNASRRSF IASRSDLS LERGLHG+
Sbjct: 2  ISSGINLVMTVIGFAVSTLFIVFVCTRLVCARIHLNASRRSFLIASRSDLSILERGLHGL 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EP+V+A+FPTKKYSD +FSS   AQ
Sbjct: 62 EPVVIASFPTKKYSDAFFSSSEDAQ 86

[Close]

BLAST of Cla013707 vs. TrEMBL
Match: M5X6C4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011047mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VST+FIVFVCTRLVCARIHLN SRRSF IASRSDLS LERGLHGV
Sbjct: 2  ISSGINLVMTVIGFAVSTMFIVFVCTRLVCARIHLNVSRRSFPIASRSDLSILERGLHGV 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EP+VVANFPTKK+SD +FS +  AQ
Sbjct: 62 EPVVVANFPTKKFSDAFFSVVEDAQ 86

[Close]

BLAST of Cla013707 vs. TrEMBL
Match: V4TE75_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032672mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-29
Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VS +FIVFVCTRL+CARIHLN+SRRSF IASRSDLS LERGLHGV
Sbjct: 2  ISSGMNLVMTVIGFAVSIMFIVFVCTRLICARIHLNSSRRSFPIASRSDLSLLERGLHGV 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EP+VVANFP KK+SD+YF++    Q
Sbjct: 62 EPVVVANFPMKKFSDEYFAAAEDTQ 86

[Close]

BLAST of Cla013707 vs. NCBI nr
Match: gi|659113451|ref|XP_008456580.1| (PREDICTED: RING-H2 finger protein ATL8-like [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-37
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSF IASRSDLSGLERGLHGV
Sbjct: 2  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFPIASRSDLSGLERGLHGV 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EPMVVANFPTKKY+DDYFSSMR AQ
Sbjct: 62 EPMVVANFPTKKYNDDYFSSMRNAQ 86

[Close]

BLAST of Cla013707 vs. NCBI nr
Match: gi|449446273|ref|XP_004140896.1| (PREDICTED: RING-H2 finger protein ATL8-like [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-37
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSF IASRSDLSGLERGLHGV
Sbjct: 2  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFPIASRSDLSGLERGLHGV 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EPMVVANFPTKKYSDDYFSSM+ AQ
Sbjct: 62 EPMVVANFPTKKYSDDYFSSMQNAQ 86

[Close]

BLAST of Cla013707 vs. NCBI nr
Match: gi|1021037990|gb|KZM95773.1| (hypothetical protein DCAR_019015 [Daucus carota subsp. sativus])

HSP 1 Score: 142.5 bits (358), Expect = 4.2e-31
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VST+FIVFVCTRL+CARI LNASRRSF I SRSDLS LERGLHG+
Sbjct: 2  ISSGINLVMTVIGFAVSTMFIVFVCTRLICARIQLNASRRSFHITSRSDLSILERGLHGL 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQYV 88
          EP+VVANFPTKKYSD +FSS    QYV
Sbjct: 62 EPLVVANFPTKKYSDQFFSSAEDTQYV 88

[Close]

BLAST of Cla013707 vs. NCBI nr
Match: gi|703151611|ref|XP_010110165.1| (RING-H2 finger protein ATL32 [Morus notabilis])

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-31
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VSTLFIVFVCTRLVCARIHLNASRRSF IASRSDLS LERGLHG+
Sbjct: 2  ISSGINLVMTVIGFAVSTLFIVFVCTRLVCARIHLNASRRSFLIASRSDLSILERGLHGL 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EP+V+A+FPTKKYSD +FSS   AQ
Sbjct: 62 EPVVIASFPTKKYSDAFFSSSEDAQ 86

[Close]

BLAST of Cla013707 vs. NCBI nr
Match: gi|645252150|ref|XP_008231990.1| (PREDICTED: RING-H2 finger protein ATL7-like [Prunus mume])

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-30
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFSIASRSDLSGLERGLHGV 60
          +SSG+NLVMTVIGF VST+FIVFVCTRLVCARIHLN SRRSF IASRSDLS LERGLHGV
Sbjct: 2  ISSGINLVMTVIGFAVSTMFIVFVCTRLVCARIHLNVSRRSFPIASRSDLSILERGLHGV 61

Query: 61 EPMVVANFPTKKYSDDYFSSMRYAQ 86
          EP+VVANFPTKK+SD +FS++  +Q
Sbjct: 62 EPVVVANFPTKKFSDAFFSAVEDSQ 86

The following BLAST results are available for this feature:

BLAST of Cla013707 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB30_CUCSA	2.8e-37	96.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G044540 PE=4 SV=1	[more]
A0A164ZDK0_DAUCA	3.0e-31	80.46	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019015 PE=4 SV=1	[more]
W9SEZ7_9ROSA	5.0e-31	83.53	RING-H2 finger protein ATL32 OS=Morus notabilis GN=L484_016785 PE=4 SV=1	[more]
M5X6C4_PRUPE	1.5e-30	82.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011047mg PE=4 SV=1	[more]
V4TE75_9ROSI	3.6e-29	77.65	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032672mg PE=4 SV=1	[more]

BLAST of Cla013707 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113451\|ref\|XP_008456580.1\|	3.0e-37	96.47	PREDICTED: RING-H2 finger protein ATL8-like [Cucumis melo]	[more]
gi\|449446273\|ref\|XP_004140896.1\|	4.0e-37	96.47	PREDICTED: RING-H2 finger protein ATL8-like [Cucumis sativus]	[more]
gi\|1021037990\|gb\|KZM95773.1\|	4.2e-31	80.46	hypothetical protein DCAR_019015 [Daucus carota subsp. sativus]	[more]
gi\|703151611\|ref\|XP_010110165.1\|	7.2e-31	83.53	RING-H2 finger protein ATL32 [Morus notabilis]	[more]
gi\|645252150\|ref\|XP_008231990.1\|	2.1e-30	81.18	PREDICTED: RING-H2 finger protein ATL7-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0048577	negative regulation of short-day photoperiodism, flowering
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013707	Cla013707.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 4..85 score: 4.9
None	No IPR available	PANTHER	PTHR14155:SF145	RING-H2 FINGER PROTEIN ATL61-RELATED	coord: 4..85 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013707	Cla97C08G150880	Watermelon (97103) v2	wmwmbB100
Cla013707	Csa6G044540	Cucumber (Chinese Long) v2	cuwmB457
Cla013707	MELO3C019885	Melon (DHL92) v3.5.1	mewmB308
Cla013707	ClCG08G008120	Watermelon (Charleston Gray)	wcgwmB400
Cla013707	CSPI06G03830	Wild cucumber (PI 183967)	cpiwmB472
Cla013707	Cucsa.364780	Cucumber (Gy14) v1	cgywmB658
Cla013707	CmaCh15G004790	Cucurbita maxima (Rimu)	cmawmB261
Cla013707	CmaCh04G025300	Cucurbita maxima (Rimu)	cmawmB668
Cla013707	CmoCh15G004870	Cucurbita moschata (Rifu)	cmowmB251
Cla013707	CmoCh04G026490	Cucurbita moschata (Rifu)	cmowmB663
Cla013707	Lsi08G006580	Bottle gourd (USVL1VR-Ls)	lsiwmB475
Cla013707	Cp4.1LG13g10060	Cucurbita pepo (Zucchini)	cpewmB171
Cla013707	Cp4.1LG01g24890	Cucurbita pepo (Zucchini)	cpewmB395
Cla013707	CsGy6G003800	Cucumber (Gy14) v2	cgybwmB428
Cla013707	MELO3C019885.2	Melon (DHL92) v3.6.1	medwmB302
Cla013707	Carg02423	Silver-seed gourd	carwmB0252
Cla013707	Carg04607	Silver-seed gourd	carwmB0682
Cla013707	CsaV3_6G004100	Cucumber (Chinese Long) v3	cucwmB482
Cla013707	Bhi04G001022	Wax gourd	wgowmB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013707	Silver-seed gourd	carwmB0838
Cla013707	Watermelon (97103) v2	wmwmbB092
Cla013707	Wax gourd	wgowmB539
Cla013707	Watermelon (97103) v1	wmwmB060
Cla013707	Cucurbita maxima (Rimu)	cmawmB258
Cla013707	Cucurbita maxima (Rimu)	cmawmB667
Cla013707	Cucurbita moschata (Rifu)	cmowmB248
Cla013707	Cucurbita moschata (Rifu)	cmowmB357
Cla013707	Cucurbita moschata (Rifu)	cmowmB662
Cla013707	Melon (DHL92) v3.5.1	mewmB047
Cla013707	Watermelon (Charleston Gray)	wcgwmB274
Cla013707	Cucumber (Chinese Long) v2	cuwmB380
Cla013707	Cucurbita pepo (Zucchini)	cpewmB023
Cla013707	Cucurbita pepo (Zucchini)	cpewmB173
Cla013707	Cucurbita pepo (Zucchini)	cpewmB394
Cla013707	Bottle gourd (USVL1VR-Ls)	lsiwmB289
Cla013707	Cucumber (Gy14) v2	cgybwmB352