Cla013164 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013164
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Spc97 / Spc98 family of spindle pole body (SBP) component (AHRD V1 ***- F4IZ65_ARATH)
Location	Chr5 : 11857385 .. 11868170 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACAACAAGGATAGATTATTTGTCTACATCAAAGAACAATTCACTCTACCTCTTTCCAAAGCAACGATCGGTATATTATTTACTCACTCCAATTATATCTTCTTCTTTTTATTTCTGTTTCATAGCCCTCATATTTGGTCAAACTCTATATTTTGGGACTTGATGGTTTAAATTAATCTATATTTGCTATCTGTTTTTTGTTCTAATTCCAACCTTGGGTTCTTTTCTAAATTGCAGGGATCGATTCATTTGAGTTTCTAGGTTTGGGATATCAAGTAGAGTGGCCAATCAATATCATTTTGACGCCTGCTGCATTGAAAATATATGCTGAGATTTTCAGTTTTCATGTTAAAGTGAAGCTTGCTGGTTTCTCTCTGACCAAAGTTTGGTCCTCACTGAAGGTCGTGATATATCCTTTAATTTGATAAGTCAAAGGACTTAGTTCGTTGAAGCAACATAATTAGTTTCAATATAATTGTTTGAACTAGCTGACAATCAATAATTCATAAAGCATGGTCAGTACACAAATATGCAACAGAACGATGAAGAATTTTGGTTGCAACTCAGGAGATATTAGACAACAAAAATTGAACTTTTGACCATAATGCGTACAAAGGGGCAATTTTGGATGACTGTAAATCAGATGAGGTGTAGAGCAGCAATACAAGAAATAATATTTTGAACATGTTATAATTTTTATGGAAAAAAGGGTTTATACTTTTGAATGGATCTTTGTTCAATTTAATTCTGAATCAAATTATTCTTCCCTAAGATATTTCTGTTCTCAACGTTTTAGATCGAGTTTTTAGATCATGATATATTATTTCTTCTTGTTACTATGAACCCTTCTTTTTCATTACTTAGGATTGACTCTGACAAAGTTATAGGATGGCAATTTTCCCCTCTTCTAGAACTTTTAGATGGATATTTCTCTAAAAGCTTTGTTCTGTCATACTTAAAGTTTTGATGTTTGGTTCTTCTCTTAAGCTTCAGAGCTGGCTGGCGTCAATAATAGTTGAAGTTGAATTGGTCTTAAAATTCTTGGAAATATGAATCGAACTTATGCCTTTTGCTTCAAATTTTGACTGACAGGACATGGTTATCTTGGTCCGTCAGAATCGCCATTCCAAACTTATTAATCAGGAAATCCAGCATTTCAATGTATTGGTGAAGACTAGGTGCTCCTGATTTGTTGCAAATTTCTTTTTCTTTGTTTTGCTCAAAATGCTGGCATTCTCTTACATTACGAAAACAGAAATTAAAACTTTGTGGTTATTATATGTAGTTCTGTGTTCTAACTATGTTTGTCCTTTCATTCTTTCATGATCAGGCATCAAGTCAACCATTTTGTGTGTGTATTACAGCATTATGTGGAGTCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTCAAGGTGAGAATCGATGTTTTATCTCATGTATTAGTGTAAAATATTATTTTATGGCACTTTTTCTTGTACTTCAGGATTGGTGTTGAGTTGTTCTAGGTTATTTATTTTTCTCCAAAGGACATCTACTACATTTTTGTGTATCGACCAAAAGAGTACCCCTCCCTTCTCATCTTATTTCCAAGACATCATGTGTTCTTTATCCATCTTCTGTCCAGAATTTTAACTCTCTCGTATTTATTGTTTACTTTAAGATCGTTGAATCTATACAGAAAATAGAACTAAAATGATGAGGAGATATTTGGATTTTCTTGGGTGCTTGTTTGGGATTATTGTATTTTTTTTTTTTTTTTCCTTTTCTAAAACCATAGTTTAAAATTATGGTTTGGTTGTTATAAAAGTCAAAAGTTATTAGATTTATGATTTGGGGAGTGTTATTTTATTATTTTCATTATTTTCTTTAGTACAGAGTGGTTGTTATAGTACATAGTAAATTTAGAAAATATGTGCAAACAACAAAAATATTTTTTTTTCCAGTTTACCATTCTTTGTTCTCAATATCATTTTTTTAACAAGTTATCCTGTAAGACAAGTTGCTATATTTGAAAACTAAACAACATAGGTTTGAAATAGGCCTTAACTTCCTGAATTACTACAGGGATTCTAATTATCATTATCATGATTTATCGGTTCAAACTGCCAAATCTCAGCACTTACATTGTTACCTGATACTGTTTATAAAATCGTTACCTGAGACTTGACATTGATTAAATTTCCTTCATCTTAATTTCTCCATGTTTTAAGACATCGTATATCTTGACCATCCATTGCATCTCATCCTAGAGTCTAGATATCATTGTTCTTTATATCAAGAAATCTGGAAAACATTTTACGAAGAAGTCTCCATCTTAACAAGTAATATGGGAGAGAAGTATTGATCAGTGCTTTTATTTATCATCCATGACCAAAGAATGGGGACTGTCTATTTGCATCTTCATTTGATTCATTTTGAACACTCTGGTTTTTTCTTTATACAATATGCTCCTGTTTTATGTAGGCAAAAGATATGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACACACGTAAGATTCTATCTAAAAGTTCGAAATATCTTCAGCAACTGGATAGTTATTTCTGCATGCTTAAATTTCTGTTCTTTTAGTAAGAATTAAATGCATTTTTTTTCTTCGTAAGAAAAAAGAAAAAAGTTTTGTTGGATTAATCTAAGATTAAAAAGAGTGGATTTGGGGGAGGAATTCCAAGTCGTAGACAACGAAGGTTTCAAAATATTTCCCCAGTTCTACAAGCTCAAATTAAGTCTAGATTTGTCCAAAAAAAAAAAAAAAAAGGTTTGTTGAATCTTAAAAAGTCAGGATGAAAGAGACAACTACGCAGATGCACCAATCAGGAAAGCTCTATCAATGACCTTGAACTTCCTGTGATGTTGTTCAACCAAAGCTGCATTAGAGCGCCCTCGACAATGTTTAGCCACAATGCTTTTGCCATTCCTTCAAAAGGATAACCACCTATAGACAGATGAAATAATGTAAATTGTTTTGCAAGATCATGGGGAAAGTGAAAGAAACTTTTTTGTCAAATTAGTGAAGTTTGGAAGAGAATGCCCAGTGGTGCAAGATATGTTTAAGCAGCACAATGAATAGCGCTATAATTTCAGAGGAGGGAGAGATGGAAAGCGTCCTTTCTCCCCATTAATTTTGTGCACATGGAGCACCAACAAGACTGAAGGGACATTTTAGGAATTTTTCTCTGCACTTAGTTCCCTGTTTTGATGCTGCAAGAGCCAAAGCTCATAGAAAAGTAACCTTTTTTGGTACCTCTCTTTCCAGATGAGCTTGTACTGAAGGCTGGGTAATATGTCATCTGGTACTTGGAAACTTTGAGCCATGACTTTCAGCACTACTGCTACATTCCCTTGTTTTCGTTCACGTGCAAGGGACGTAGCCCCTTCTTCTCAGATCTGAGAGAAAAAAACAAGATATAGCTACCTTTTTTCAGATTTGAGGGAAGTGAGAACTGAGAAGTGGGCTCGTTCCTATTTGTTCTTGGGAACTTTTGTTTGCTCAATTTGGTTTTTTCTTAATGTGTTTAATTACGAATTTCTGTTAATTAATTTTAGTGAAGTTATAAACAAAGGGCTAGTCAATTACTTTTGCCATGTATGTATGTATGTATGTATGTAAGAGATTAATTATTTCCTCCTCCGCATAAGAGTTGATTAATAAAAATTCTTTGGCTATCATTGCCACCCATTCGGAGCCTCCATTGTTCCTTTTCTTCCAGGGACTGGAGCTTTCTGCTGAATGAAGTTGCCTAGAGTAGTTGTTGATTCAATGGCAGAGGCTCGAATGGGTGGTCCTTGAAAAGCAAAGCAAAGCTTTTATGGAGATACTTCTAGAGCTTGGGCATTTGATAGAGAATGAATCAAAGAATACTTTTTTTTTTCCTTCTTTTGTAATTGTGTGCAACTCATATTCTCCTTGTGGACTCTTGCTCACAAGAAATTATTTTGTAATTACAACTTATCTTTTGATCTTTCAAGACTTTGCTCCATTAATTCTTTGGGTGGGGGCCATCTCATCCCCCTTGTACCTGGACTGCTCTTTCCCGTAATATATTCTTTCAATTGTTTCTTATTAATGAAAGAGAGAAAGAAAGCTAACACAAAGGTGTACGTGGAAAAACCCTAGATTTGGGAAAAAACCACGATAGAAGTTTCTCTTTTATTTATTTGTGTTACTCACTCAAAGAATTACAAGAGGAAGAATAAATAGAGATAAAAAAACTTAAACAAGGAAAAATATTGAAAACATATATAAGGAAAGAGATAAATTCTAAAATATCTCCAAAATATTTTCCTTCTTTTCAACACTCCCCCTCAAGATGGAACATAAATGTCAATTAGGCCCATCTTGCTTACACATGCATCAAAATTCTGCTTAAGCAACCCTTTGGTAAGAACATCTGCAACTTGTTGACTGGAAGGAATATACGGAATGCAAATGCTTCCGTTTTCCAATTTCTCCTTTATAAAGTGTCTATCGATCTCCACATGTTTTGTTCTATCATGCTGAACTGGATTGTTTGCAATGCTAATAGCAGCCTTATTATCACAATAGAGTTTCATAGGTAGTTCACTGCTTTGGTGAAGATCAGATAGAACTTTCTTCAACCAGATTTCTTCACAGATTCCATGACTCATAGCTCTGTATTCTGCTTCAGCACTACTTCTAGCAACTACACTTTGCTTCTTACTTCTCCAAGTTACAAGGTTACCCCACACAAAGGTACAATACCCAGATGTAGATTTTCTGTCAATTACTGATCCCGCCCAGTCAGAGTCTGTATAGGCTTCGATGTATTTTCTGTCGGATTTTCTAAACATCAATCCTCTTCCTGGTGTGCTCTTCAAATACCTTAGAATCCTGTTTACAGCTTCCATGTGTTCTTCGTAGGGGGCTTGCATAAACTGACTCACAACACTGACAGCATAGGAGATATCTGGTTTAGTGTGTGCTAAGTAAATTAGTCTCCCAACTAGACGTTGATATCTCTCTTTATTAACAGGAACTTTGGTAATAGACTCTCCCAATTTTGCATTAGACTCGATCGGAGTGTCAGCAGGCCTGCATCCGGTCATACCTGTTTCTTTCAGTAAATCAAGAGTGTATTTGCGTTGTGAAACTGAGATACCTTCTTTTGATCTTGCTACCTCCATCCCAAGAAAATACTTTAGATTTCCTAGGTCTTTAATTTCAAATTCGTCTGCCATTTTCTGTTTTAACTTGGTGATTTCAGCAGTATCATCTCCAGATAAAACGATGTCATCGACGTATACAATCAGAACCGCAATCTTACCTGAGACAGACCTTTTTGTGAATAGGGTATGGTCAGAGTGTCCTTGAGTGAAGCCTTGGGACTTAACAAAAGTAGTGAATCTCTCAAACCATGCTCTTGGTGATTGTTTTAATCCATACAAGGCCTTTCTAAGTTTGCATACACATCGATCAAATTTTTCTTCAAAGCCAGGAGGGGGGCTCATATACACTTCTTCTTCTAGATCACCATTCAAAAAGGCGTTTTTCACATCTAGCTGATAGAGAGGCCAATCTCTGTTTACTGCAACTGACAGAAGGACTCTGATTGTGTTCAACTTTGCGACAGGAGAAAAGGTCTCGGAATAGTCTACCCTAAAAGTTTGAGTGAATCCTTTCGCTACAAGCCTGGCTTTGTAAGGACAAATTATTATAGGAGAGGAAGCTGTACATAGGATACCTGGTGCAAGATCTTGTGCCCTTTCTTAATGCAATGGGCAGGTCTAGATTGGTATCACCATCTCCTATCTTGTCGGGCTCTTCTCCAGTAGGGTTTTGGGGTTCTATCCCTTTTTCATTCTCCTCAACTATTGTTGACACTGCCTCATTCTCAGCCACCTGGTTATTTTCTGTCATATCATTTTTACCTTCTTCTGCCGAAAGTTTTGTCAAGTCCACCATATCGTTTTCAACACAGACATTTTCAACGCAAGTAGTACTATTTTCAGGATCAGTTGTACCTTGGGCTTGTGTCGGTTCGGATGATTGGACTGGAGCCAGCACATCCTTAGGGGCCGCTATTTCCTTTCTAAGATTTTTCCTATAGTACGTTATCCATGGGACTTGTCTGGTGGGTAGGACAGTGTCGTGAGTTGTTAGAGTAGGTTCAGAAAGGGAAAGGGAATTTGATTCAGAGAAGGAATTTGGATAGTTAGTCTCTTCATTATTGCTCTCCCCCTGAAGAGGACTAACGGAAAAAAAAGGTTGATCTTCTAGGAAGGTGATATCCATAGAGATGAAGTATTTCTGGGAAGTGGGATGGAAACATTTATAGCCACGTTGGTGGAGGGGATATCCAACAAAGACACATTTATGGGCCCGAGGGGAGAACTTAGTCTGGTTTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGATGAAACTTCAGACTTATCTGTTAAAAGGAAGACCCAAGTAAGACGAGTGTGGTCATCAATGAAGGTAACAAACCAACGTTTACCCGACGAGGTGGTAATCCTCGAGGGGCCCCAAACATCGCTGTGAATAAGGGTGAAAGGTTGAGAGGGTTTGTAAGGTTGAGACGGGAAGGAGACTCTGTGTTGTTTTGCTCGAATACACACATCGCAAGATAAAGAGGAGATGTCAACTTTATTAAACAAATGAGGAAATAAATATTTCATATATTGGAAATTGGGATGGCCAAGACGAAAATGCCATAGCATACAATCAGTTTCAGAAGTTGAAAAATAGGAGGATAACAAACTAGTCCTAGAACTTTGCCTAGAGGAAGTATCATTATTAAGGAAATAGAGTCCCCTATTGTGCTGGGCAGTGCCAATCGTCTTCCCCGAGCTCAAGTCCTGAAAGAGAACATCATCGGGTGAGAAAGCTACACGACAATTTAAATCTCTGGTTATCTTACTCACAGACAGTAGATTATATGAGATTTTGGGAACATGCAGGACATTCTGTAATATTAAACCATCGAAAGGAGAAATATGGCCCTTTCCGGCAACAGGGGCAAGTGTCCCATCAGCAATTCGAATCTTTTCATTACCAGCACATGGATGATAAGATAGGAAATCGTCAGAAGTTCCAGTCAAATGATCTGTAGCTCCTGAATCAAGAATCTAGGGTTTCTGGCCAGTAACGCTAAGTAAACTCAAGGATGGAGAAATACCTGAATGTGCAATTGCCCCAAGAGTAGTGGTACCATTGTCAGCTGGGTAGTTCTCTTGACGACATGGTTCCGAGTCACTTATCAAGGCCTGATTAGGTTTGTCGTTTGGAGGACGACGTTTACCATTCGGAGGCCGGCCATGTAGCTTCCAACACTGATCTTTCGTGTGCCATGGTTTTTTACAGTGTTCACAAACTGGAGGAGGTTTCCCATTCTGCTTGTTTCCAGTTGTATTAGTTATTTTTGCGTTGAACGCAGCTGAGTCAGTAATGGAGGTACCCACAGTATTCATAGCACTCGTTCTATCTTCCTCAAGCCTAACTTCTGAGCAGACTTCCATCAAGGTCGGTGTTGGTTTCTGTCCCAAAATTCGACTTCGTACAGCATCGAATTTGGAGTTTAAGCCGGCTAAGAAATCATATACTCGATCAACTTCCTCAAGTTTGTAGTATTGAACTCCCCCACACGGACAATCCCAAACAAGTTCTCGACACAAATCCATTTCCTGCCAGATCAGAGACAATTTGTTAAAGTATGATGTGACATCCATAGTACCTTGTTTACATTCGTGGATTTGTTTCCGCAGCGTGTAGAGTCGAGAGGCGTTTTGTCTTTTGGAGTATAATTTCTGAACGGCATCCCAAATATCTCGAGCTGTGGCAGCATACAGTAAGGGTTTTCCAATTTGAGGTTCCATACTATGGATTAAAAGTGACCGGAGTAGTGAATCCTCTCCTTTCCAAATGCGCTCTTGCGGGTCTCCTGGTCTGGGTTTTGGTATGTCACCAGTTAAATACCCGAATTTGTGACGCCCTTCAAGAATCATCTTTACCGACTGAGACCAGAAGAAGTAATTTTGGCCATTCAATTTTTCACCAATAGTCAGTCCAGTGGCGTTACTTATTGGACTAGACAAATAAGGTGTCGGTGTAATGGTTGGGATTGTAGTTATTGGATGCACTGGATACAACAGTAAATCTGACGGGATACCCGAATTTACTGCACTTTGACCCATATGAGTAGAAGCACTCAGTGTGGCTCCAAGGGCAGCGATTTGTTGTTGAAAATTTGCTTGAAGGGCGGCGAGTTGTTGTTGAAGAGAAAGTATTGAAAGGCAACCACTAGGTCCGGTGGTAGCCGCGGTGGTCGGAGGAATACCGGCTCCGGCGTCGACTCTCGACTGCCCAGAACACCCGGACGAGGTCCCGATCTCCGCAAACAGTCGATTCGACGGAGATCTAGGGTTAGATGCAGATCTCGGCTGCCCAGACCGTCCGATTTCCGCAAATGGTTGGCTGCCCAGAATATCGGACGCAGATCTGACCTCCTCGACGTGCGGCTGTGCAGCAAAGACGGTCGATGGGAGGCGCAAATCGACATGGTCGGTGGTCTGTCGGTAGATCTGGTCGATTCGAGGAGGCGCGCCGCTAGGGCTTGGGTTGAGCGGCGGCAGTAGGCTCTGAACGAAGGCAGCGGCGGCGTTTGGGTTGAGCGACCGGAGATACTCGTGAATCGCAGCTTGGACGGCGGATTCTGTGGTGGTGGCAGCGGCGGCGGATCCCATCGGCGACAGTGGCGGCAGTTCTTGCCTAGGGTTATTTTCGTCAGTGACGGCTAGGGTTTCCTCACCTTGCTCTGATACCATAATGAAAGAGAGAAAGAAAGATAACACAAAGGTGTACGTGGAAAAACCCTAGATTTGGGAAAAAACCACGATAGAAGTTTCTCTTTTATTTATTTGTGTTACTCACTCAAAGAATTACAAGAGGAAGAATAAATAGAGATAAAAAAACTTAAACAAGGAAAAATATTGAAAACATATATAAGGAAAGAGATAAATTCTAAAATATCTCCAAAATATTTTCCTTCTTTTCAACACTCCCCCTCAAGATGGAACATAAATGTCAATTAGGCCCATCTTGCTTACACATGCATCAAAATTCTGCTTAAGCAACCCTTTGGTAAGAACATCTGCAACTTGTTGACTGGAAGGAATATACGGAATGCAAATGCTTCCGTTTTCCAATTATCAATTAAATAGAAAGAAAAAAATGAAAGAAAGAAAGTGCCACTTGAAATTTAAGGGCCAAATAATATGATGGTGGAAAACTCAGGGACTAGAAAGTTAATTTATCCAGAGTAAGAGTAAAAGTAAAAGGGCTTGTTGGACATGTGTCTAAGGTGTGCTTGACTTGTTCAAGTGGCGTAGAGGTCTGCAACACTGGACTTGACTGAATCTTTGAGCAATGTATGTACTTTCTAGGTTGTCTTTGCTAAAGGAAGTGATTTAGAAACATATTCATTCATTTTTCTTTGTTGTCGACTGGCAAAACTGGAAGCTTAGAAGTTTCTTGAATTAGTTAAACTGGGTTCCTAATATTTCTTATGTACAACCTTTTGCAGATGTTTCTTATCTGAAGAAACCCGATCTGTGGCTGGTATCATTAATCAAATCTTGCAATGTGCTCTAGACCTCCGATGTTGTTTTACCGGTGACATGTGGAATACCCAAGTTGATAATGCAGCTTCTTCGAGGAGACTTTCTGGGATCAACAAGTCTCAGGTAAATTATTTAAGTAGAGATTCCTTATTACGACCATGGAATGGTAAGGAACAATCAATTTTAATTTTGCTTCACACTTCAAATCTAGGGCAAATATCCAAAATACTTAGTATGTTCATGTTTCAAATCTCCCCTGCTTGTACCTCGCAAAAAATGTAGTGTAGTTTTATGGAAAGCCATTTACTAAAATATGCACTAAAGAAGTTATCTTCTTCTTGCATTGTTTGTCATTTGGAATTCATTTCTTGTTCTCCTTGTGTTTGATCAAACATGACAGCCGTTTTGACAATCATGTAACTTTCGAATCGACTAAAGTGCTCCTTATTCCCCATTCCTTTAGATCAGTTGACATATATCAATATAGTAGTGAAAAATGTCTTATAAAAACTTCTTTGTCAAACACGCTTTGGTTGGCACTTGGTTGAAATTGACAAATACAATGTGCATTACCCATGCATAGCTTGAGAATTTATAATACCCTTCCCTGTTATTATCTTAGAAAGAGAACTGATAAGGAAGTTAAACTGTATACATTTTGCAGGTACTTGTCATAAAGAAGAGATTTGACACAAACATGAAGGAATTGCACTTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTACGGGCTATCTCGACTTTGGGAATGTCTCAATTACAATTATCACTACTCTGACACTGGTAATGAAATGAGTTACTATGCTTTCTCAGTCTAA

mRNA sequence

ATGACCACAACAAGGATAGATTATTTGTCTACATCAAAGAACAATTCACTCTACCTCTTTCCAAAGCAACGATCGCATTATGTGGAGTCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTCAAGGCAAAAGATATGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACACACATGTTTCTTATCTGAAGAAACCCGATCTGTGGCTGGTATCATTAATCAAATCTTGCAATGTGCTCTAGACCTCCGATGTTGTTTTACCGGTGACATGTGGAATACCCAAGTTGATAATGCAGCTTCTTCGAGGAGACTTTCTGGGATCAACAAGTCTCAGGTACTTGTCATAAAGAAGAGATTTGACACAAACATGAAGGAATTGCACTTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTACGGGCTATCTCGACTTTGGGAATGTCTCAATTACAATTATCACTACTCTGACACTGGTAATGAAATGAGTTACTATGCTTTCTCAGTCTAA

Coding sequence (CDS)

ATGACCACAACAAGGATAGATTATTTGTCTACATCAAAGAACAATTCACTCTACCTCTTTCCAAAGCAACGATCGCATTATGTGGAGTCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTCAAGGCAAAAGATATGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACACACATGTTTCTTATCTGAAGAAACCCGATCTGTGGCTGGTATCATTAATCAAATCTTGCAATGTGCTCTAGACCTCCGATGTTGTTTTACCGGTGACATGTGGAATACCCAAGTTGATAATGCAGCTTCTTCGAGGAGACTTTCTGGGATCAACAAGTCTCAGGTACTTGTCATAAAGAAGAGATTTGACACAAACATGAAGGAATTGCACTTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTACGGGCTATCTCGACTTTGGGAATGTCTCAATTACAATTATCACTACTCTGACACTGGTAATGAAATGAGTTACTATGCTTTCTCAGTCTAA

Protein sequence

MTTTRIDYLSTSKNNSLYLFPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVAGIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLFYLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV

Homology

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BLAST of Cla013164 vs. TrEMBL
Match: M5WK50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000377mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.8e-53
Identity = 104/159 (65.41%), Postives = 120/159 (75.47%), Query Frame = 1


Query: 20   FPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVA 79
            F      YVESQLSH+SWCRFL SL+ K KDMMDL+S+H+AYL D+L  CFLS+ETR +A
Sbjct: 1069 FVSTLQQYVESQLSHVSWCRFLYSLKHKVKDMMDLQSVHLAYLIDSLDICFLSDETRPIA 1128

Query: 80   GIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLF 139
             II  ILQCALD R C TG+MW+          RLSGIN SQV+VIK+ FD NMKELHL 
Sbjct: 1129 RIIESILQCALDFRSCLTGEMWDVGTSQGNLIARLSGINISQVVVIKQMFDKNMKELHLC 1188

Query: 140  YLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
            YLKSPK G++GLS  WE LNYN +YSD GNEM+YYAFSV
Sbjct: 1189 YLKSPKHGKFGLSHFWEYLNYNKYYSDVGNEMAYYAFSV 1227

[Close]

BLAST of Cla013164 vs. TrEMBL
Match: U5G4E8_POPTR (Gamma-tubulin complex component OS=Populus trichocarpa GN=POPTR_0009s15540g PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 98/149 (65.77%), Postives = 116/149 (77.85%), Query Frame = 1


Query: 27   YVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVAGIINQIL 86
            YV+SQLS++SWC+FL+SL+ K KDMMDLES+HMAYLTD+LH CFLS ETRSVA II  IL
Sbjct: 895  YVQSQLSYVSWCKFLRSLKYKVKDMMDLESVHMAYLTDSLHICFLSNETRSVAIIIESIL 954

Query: 87   QCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLFYLKSPKV 146
            QCA + R CFTG MW+  +D      +LS IN SQVL IK++FD N+K+LHL YLK PK 
Sbjct: 955  QCAFEFRSCFTGGMWDMGLDQGDLLGKLSRINISQVLAIKQKFDKNLKQLHLCYLKFPKH 1014

Query: 147  GEYGLSRLWECLNYNYHYSDTGNEMSYYA 176
            GE+GLSR W  LNYN +YSD GNEM  YA
Sbjct: 1015 GEFGLSRFWGYLNYNKYYSDVGNEMDLYA 1043

[Close]

BLAST of Cla013164 vs. TrEMBL
Match: U5G6S0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15540g PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 98/149 (65.77%), Postives = 116/149 (77.85%), Query Frame = 1


Query: 27   YVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVAGIINQIL 86
            YV+SQLS++SWC+FL+SL+ K KDMMDLES+HMAYLTD+LH CFLS ETRSVA II  IL
Sbjct: 1046 YVQSQLSYVSWCKFLRSLKYKVKDMMDLESVHMAYLTDSLHICFLSNETRSVAIIIESIL 1105

Query: 87   QCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLFYLKSPKV 146
            QCA + R CFTG MW+  +D      +LS IN SQVL IK++FD N+K+LHL YLK PK 
Sbjct: 1106 QCAFEFRSCFTGGMWDMGLDQGDLLGKLSRINISQVLAIKQKFDKNLKQLHLCYLKFPKH 1165

Query: 147  GEYGLSRLWECLNYNYHYSDTGNEMSYYA 176
            GE+GLSR W  LNYN +YSD GNEM  YA
Sbjct: 1166 GEFGLSRFWGYLNYNKYYSDVGNEMDLYA 1194

[Close]

BLAST of Cla013164 vs. TrEMBL
Match: W9R620_9ROSA (Gamma-tubulin complex component OS=Morus notabilis GN=L484_009359 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-48
Identity = 101/159 (63.52%), Postives = 114/159 (71.70%), Query Frame = 1


Query: 20  FPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVA 79
           F      YVESQLSH+SWC FL SLQ K +DMMDLES+HMAYL D+L  CFLS E R VA
Sbjct: 188 FVSTLQQYVESQLSHVSWCNFLHSLQHKVRDMMDLESVHMAYLIDSLDICFLSNEARPVA 247

Query: 80  GIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLF 139
            II+ ILQC+LD R C  G MW+    N   + RLS IN SQVL IKK F+ N++ELHL 
Sbjct: 248 RIIDSILQCSLDFRSCLRGGMWDVGT-NEDPAGRLSRINASQVLAIKKTFEKNLQELHLC 307

Query: 140 YLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
           YLKSPK  EYGLSR W  LNYN +YSD GNEM YYAFS+
Sbjct: 308 YLKSPKHEEYGLSRFWGYLNYNEYYSDVGNEMRYYAFSL 345

[Close]

BLAST of Cla013164 vs. TrEMBL
Match: A0A0D2QBQ1_GOSRA (Gamma-tubulin complex component OS=Gossypium raimondii GN=B456_009G080700 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.8e-48
Identity = 97/159 (61.01%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 20  FPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVA 79
           F      YV+SQLSH+SWC+FL S + K KDMMDLES+HM+YLTD+LH CFLS+ET+ +A
Sbjct: 811 FVSTLQQYVQSQLSHVSWCKFLHSFKHKVKDMMDLESVHMSYLTDSLHICFLSDETKPIA 870

Query: 80  GIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLF 139
             I  ILQCALD R C TGD+WN  +       +LS IN SQVL IK++FD N+KELHL 
Sbjct: 871 STIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQVLFIKEKFDKNLKELHLL 930

Query: 140 YLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
           YLKSPK GE GLS  W  LNYN +Y +  NEMSYYAFS+
Sbjct: 931 YLKSPKHGESGLSYFWGYLNYNDYYFNE-NEMSYYAFSI 968

[Close]

BLAST of Cla013164 vs. NCBI nr
Match: gi|778679754|ref|XP_011651193.1| (PREDICTED: uncharacterized protein LOC101209612 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 137/153 (89.54%), Postives = 146/153 (95.42%), Query Frame = 1


Query: 26   HYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVAGIINQI 85
            HYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEET+SVA  INQ+
Sbjct: 1071 HYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETQSVASTINQL 1130

Query: 86   LQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLFYLKSPK 145
            LQCALDLRCCFTGDMWNTQVD+AASSRRLS INK+QVLVIKKRFD ++KELHL +LKSPK
Sbjct: 1131 LQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLKSPK 1190

Query: 146  VGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
            VG++GLSRLWECLNYNYHY  TGNEMSYYAFSV
Sbjct: 1191 VGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV 1223

[Close]

BLAST of Cla013164 vs. NCBI nr
Match: gi|659114495|ref|XP_008457080.1| (PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-73
Identity = 137/153 (89.54%), Postives = 145/153 (94.77%), Query Frame = 1


Query: 26   HYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVAGIINQI 85
            HYVESQL+HLS CRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEET+ VA IINQI
Sbjct: 1070 HYVESQLAHLSGCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETQFVASIINQI 1129

Query: 86   LQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLFYLKSPK 145
            LQCALDLRCCFT DMWNTQVD+AASSRRLS INK+QVLVIKKRFD NMKELHL +LKSPK
Sbjct: 1130 LQCALDLRCCFTSDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRNMKELHLCHLKSPK 1189

Query: 146  VGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
            VG++GLSRLWECLNYNYHYS+TGNEMSYYA SV
Sbjct: 1190 VGDFGLSRLWECLNYNYHYSNTGNEMSYYALSV 1222

[Close]

BLAST of Cla013164 vs. NCBI nr
Match: gi|645218491|ref|XP_008230919.1| (PREDICTED: uncharacterized protein LOC103330137 [Prunus mume])

HSP 1 Score: 215.3 bits (547), Expect = 8.6e-53
Identity = 104/159 (65.41%), Postives = 120/159 (75.47%), Query Frame = 1


Query: 20   FPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVA 79
            F      YVESQLSH+SWCRFL SL+ K KDMMDL+S+H+AYL D+L  CFLS+ETR +A
Sbjct: 1069 FVSTLQQYVESQLSHVSWCRFLYSLKHKVKDMMDLQSVHLAYLIDSLDICFLSDETRPIA 1128

Query: 80   GIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLF 139
             II  ILQCALD R C TG+MW+          RLSGIN SQV+VIK+ FD NMKELHL 
Sbjct: 1129 RIIESILQCALDFRSCLTGEMWDAGTSQGNLMARLSGINISQVVVIKQTFDKNMKELHLC 1188

Query: 140  YLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
            YLKSPK G++GLS  WE LNYN +YSD GNEM+YYAFSV
Sbjct: 1189 YLKSPKHGKFGLSHFWEYLNYNKYYSDVGNEMAYYAFSV 1227

[Close]

BLAST of Cla013164 vs. NCBI nr
Match: gi|595842438|ref|XP_007208419.1| (hypothetical protein PRUPE_ppa000377mg [Prunus persica])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 104/159 (65.41%), Postives = 120/159 (75.47%), Query Frame = 1


Query: 20   FPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVA 79
            F      YVESQLSH+SWCRFL SL+ K KDMMDL+S+H+AYL D+L  CFLS+ETR +A
Sbjct: 1069 FVSTLQQYVESQLSHVSWCRFLYSLKHKVKDMMDLQSVHLAYLIDSLDICFLSDETRPIA 1128

Query: 80   GIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLF 139
             II  ILQCALD R C TG+MW+          RLSGIN SQV+VIK+ FD NMKELHL 
Sbjct: 1129 RIIESILQCALDFRSCLTGEMWDVGTSQGNLIARLSGINISQVVVIKQMFDKNMKELHLC 1188

Query: 140  YLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
            YLKSPK G++GLS  WE LNYN +YSD GNEM+YYAFSV
Sbjct: 1189 YLKSPKHGKFGLSHFWEYLNYNKYYSDVGNEMAYYAFSV 1227

[Close]

BLAST of Cla013164 vs. NCBI nr
Match: gi|658028830|ref|XP_008349856.1| (PREDICTED: uncharacterized protein LOC103413144, partial [Malus domestica])

HSP 1 Score: 211.8 bits (538), Expect = 9.5e-52
Identity = 101/159 (63.52%), Postives = 119/159 (74.84%), Query Frame = 1


Query: 20   FPKQRSHYVESQLSHLSWCRFLQSLQLKAKDMMDLESMHMAYLTDALHTCFLSEETRSVA 79
            F      YVESQLSH+SWCRFL SL+ + KDMMDL+S HMAYLTD+L  CFLS+ETR +A
Sbjct: 1013 FVSTLQQYVESQLSHVSWCRFLYSLKHEVKDMMDLQSAHMAYLTDSLDICFLSDETRPIA 1072

Query: 80   GIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLVIKKRFDTNMKELHLF 139
             II  ILQCALD R C TG MW+        + RLSG+N SQV+ IK+ FD NMKELHL 
Sbjct: 1073 RIIESILQCALDFRSCLTGGMWDVGTGEGNRTARLSGMNISQVVAIKQTFDKNMKELHLC 1132

Query: 140  YLKSPKVGEYGLSRLWECLNYNYHYSDTGNEMSYYAFSV 179
            YLKSPK GE+GLS  WE LNYN +YSD GNEM++YAF++
Sbjct: 1133 YLKSPKHGEFGLSHFWEYLNYNKYYSDVGNEMAFYAFAI 1171

The following BLAST results are available for this feature:

BLAST of Cla013164 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WK50_PRUPE	7.8e-53	65.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000377mg PE=4 SV=1	[more]
U5G4E8_POPTR	1.4e-49	65.77	Gamma-tubulin complex component OS=Populus trichocarpa GN=POPTR_0009s15540g PE=3...	[more]
U5G6S0_POPTR	1.4e-49	65.77	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15540g PE=4 SV=1	[more]
W9R620_9ROSA	2.6e-48	63.52	Gamma-tubulin complex component OS=Morus notabilis GN=L484_009359 PE=3 SV=1	[more]
A0A0D2QBQ1_GOSRA	5.8e-48	61.01	Gamma-tubulin complex component OS=Gossypium raimondii GN=B456_009G080700 PE=3 S...	[more]

BLAST of Cla013164 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679754\|ref\|XP_011651193.1\|	1.4e-74	89.54	PREDICTED: uncharacterized protein LOC101209612 [Cucumis sativus]	[more]
gi\|659114495\|ref\|XP_008457080.1\|	1.5e-73	89.54	PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo]	[more]
gi\|645218491\|ref\|XP_008230919.1\|	8.6e-53	65.41	PREDICTED: uncharacterized protein LOC103330137 [Prunus mume]	[more]
gi\|595842438\|ref\|XP_007208419.1\|	1.1e-52	65.41	hypothetical protein PRUPE_ppa000377mg [Prunus persica]	[more]
gi\|658028830\|ref\|XP_008349856.1\|	9.5e-52	63.52	PREDICTED: uncharacterized protein LOC103413144, partial [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0051298	centrosome duplication
biological_process	GO:0090307	mitotic spindle assembly
biological_process	GO:0007126	meiotic nuclear division
biological_process	GO:0051415	interphase microtubule nucleation by interphase microtubule organizing center
biological_process	GO:0031122	cytoplasmic microtubule organization
biological_process	GO:0008150	biological_process
biological_process	GO:0000226	microtubule cytoskeleton organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0005813	centrosome
cellular_component	GO:0000923	equatorial microtubule organizing center
cellular_component	GO:0008274	gamma-tubulin ring complex
cellular_component	GO:0005816	spindle pole body
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:0051011	microtubule minus-end binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU16404	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013164	Cla013164.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU16404	WMU16404	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PANTHER	PTHR19302	GAMMA TUBULIN COMPLEX PROTEIN	coord: 27..175 score: 4.0
None	No IPR available	PANTHER	PTHR19302:SF37	GAMMA-TUBULIN COMPLEX COMPONENT 6	coord: 27..175 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013164	Csa3G185100	Cucumber (Chinese Long) v2	cuwmB243
Cla013164	CSPI03G17440	Wild cucumber (PI 183967)	cpiwmB242
Cla013164	Lsi05G002990	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013164	CsGy3G017490	Cucumber (Gy14) v2	cgybwmB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013164	Cucumber (Gy14) v2	cgybwmB232
Cla013164	Melon (DHL92) v3.6.1	medwmB448
Cla013164	Silver-seed gourd	carwmB0166
Cla013164	Silver-seed gourd	carwmB0760
Cla013164	Cucumber (Chinese Long) v3	cucwmB254
Cla013164	Watermelon (97103) v2	wmwmbB206
Cla013164	Wax gourd	wgowmB202
Cla013164	Cucumber (Gy14) v1	cgywmB367
Cla013164	Cucurbita maxima (Rimu)	cmawmB243
Cla013164	Cucurbita maxima (Rimu)	cmawmB434
Cla013164	Cucurbita moschata (Rifu)	cmowmB232
Cla013164	Cucurbita moschata (Rifu)	cmowmB427
Cla013164	Melon (DHL92) v3.5.1	mewmB461
Cla013164	Watermelon (Charleston Gray)	wcgwmB286
Cla013164	Cucurbita pepo (Zucchini)	cpewmB568
Cla013164	Cucurbita pepo (Zucchini)	cpewmB614