Csa3G185100 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G185100
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGamma-tubulin complex component, putative
LocationChr3 : 12997102 .. 12999771 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACTGGACGTGGTTTTGAGAAGTTGGCTGATGAACTTCCTAAATTAAATTGGAAAGGAAAAAAAAGAAAAACAAAGAGGTAACACATGGATTTGAATAAATGGGAAAGAATATAGGAAGCCTTGCCCTCTTAAACCCTTGCCCAAAACAAGGTTTGGGCTTGGGTGCCTAACCCATCGAATCCCAACCCTTAGAAACAAACACTTCCTAATAGATTAATTATTCCTGATCCTTTAGAATTAAATTGTGCCCATCTTTAAGCCCATTCTTTTTCAAACAGGTCAGTTCTTCAAATTACGATCCATCGACATTTTAAATACTTTGTTTTTTCCCTACCTAATTCAAAGGTAAAGTTCTTGAGAGGTTCTCCTAGCCAAACTCCGGTCTCCTCATCAAAAAAGAAGCTTGTTTCATATTTTAACTCTCTATTTAGTTTGAGCAGTGAGGTAGGTGATTTGATAAGATTTGAGAGAAGGAAGATCAATTGTTGAAGGACCCTTTAGAGACCGATCTAAATTCTCTGTTTCACGATGAGGAAGATTTAACTTTTGAGAAACAAGTCGCTGGAATTCTCTCACAAGCTCGTCAATGTGATATTCCAGATCATTTTAAGTCCTTTGTTGAGAAATGTGGGTTAGTTTTGGTTTGATCCCTGAAAGTAGACGTGTTTTCTGGTTCCTCAGACATTTAATCTTAAAAACTTAATGGGAATCCGGTGATTCTCAGGGCGTATGGGAAGGATTGTTGAAGCAAGATAATGGTTTTTTGTAAAGCGAGGTTTCATGTTTGGCCTTCTCCTTTGTATTTCTTTCTTCGTTTCATAATTCTGTTCGAAGAATTGGAGCTTTGATGGGCTTTTTCAATAGTACATGCGCAGTTTTTTTGTTGAGGTGGAAGATTTCAGCAAGTCTTCTAGGGCCACAATTGTATTTTTCAATCAAGCCTGAAGCAGCTCGGCTGTTTACCTTTTCTTGATGTTTTCCTTCATTCATTTCTGAAGCCATTTGTGATTAAGTTTTTAGCTGATTTGGGGCTCCTTGTTGACCGTTTTTTTTTTTTAACTTTGCTTTGTATTTTCTTCTTCTTGTTTTGCTCGGGCTCAGAGGGTCTGAAATTTTATTATGTTCTCTCTTGTCTCAGTTTCTGCTGTATCTGTTCTTTTAGTCCTTTTTGCTTTTGGTATGTCTATTTTACTTTGAGCTTTAGTCTCTTTTTTTATATTAAGATGTTTGTTTCCGTTTTTAAAAAATATATTATTTATTCATCCGCATAAGAGTTCATCAATAAAATTCTTTGGTTATCATTGCCACCCATTCCTCCTCCGCATAAGAGTTCATGAATAAAATTCTTTGGTTATCATTGTCACCCATTTGGAGCCTCCATTGTCTCTTTGCTTCCAGGGTTGGAGCTTTCTGCTGAATGAAGTTGGACTTCCAGCTATTTGCCTAGATTAGTTGTTGATTAGATGGTAGAGGCTCTGTTTGGGTGGTCCTTGAAAAGCAAAGCAAAGGTTTTGATGAAACACTTCTGGATCTCTTCTCTTTTGGGGTATTTGAAAGAGAATGAATCAAAGAATACTTTTTTTTTCCTTTTGTAATTGGGGAGTTGGTATGTTCTTTCAATTGTTTCAAATAAATAAAAGTACAAAAAGGAAAGAAAATGCCACTTGAAGTTTAAAGACCAAATAATATAATGGTGGAAAACTCAAGACTAGGAAGTTCATTTGTCCAGAATAAAAGTAAGAATGGCTCGTGTTGTCTAAGGTGTGCTTGACTTGGTCAAACGCGTAGAGGTCTGCAACATTCAACTTGACCTCAAATCTTCGAGCAATGTATGTGCTTTATAGGTTGTCTATAGAAAAAAAAGTGATTTAGAAACATATTCATTCATTTTTCTTCATTGTCAACCAGTGGAACTGGAAGCATATAAGTTTCTTGATTTCGTTAACTGAGTTCCTAATATCTCTTATGTATAACCTTTTGCAGATGTTTCTTATCTGAAGAAACCCAATCTGTGGCCAGTACCATTAATCAACTCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATCATGCAGCTTCTTCGAGGAGACTTTCTGAGATCAACAAGGCTCAGGTAACTTACCTAAGTAGAGATTCCCTATCACGATCATGGATTGGTAAGGACTAAGGAGCAATTAATTTTAATTTTGCTTCACACTTCAAATCTAGGGCAAGTGTTCAAAATATCCTAGTCTGTCCATGCTTCAATTCTCCCGTCCTTGTACCTAAAATGTAGTGTAGTTTTATGGAAAGCCATTCATTAAAATATGCACTAAAGAGAAGTTATTTTCTTGCATTTTTTGTCATTTGGAATTCATTTCCTGTTCTCCTCGTGTTTGACTTGACATGACAATTGGTCTCCTTATTCCCCATTCTTGAGATTAGTTGACATTTATCAATATAATAATGGAAACATTTATAACAACTTCTTTGCTATACATGCCTTGGTTGAAATTGACAACTACTATGTATATTACCCGTACGTAGCTTGAAAATATATAATATATTTTCCTCCTATTATCCTAAAAAGAGAACTGATAAGGAGGTTAAACTGTATGTCATCTTACAGGTACTTGTCATAAAGAAGAGATTTGA

mRNA sequence

ATGGTCACTGGACGTGGTTTTGAGAAGTTGGCTGATGAACTTCCTAAATTAAATTGGAAAGGAAAAAAAAGAAAAACAAAGAGATGTTTCTTATCTGAAGAAACCCAATCTGTGGCCAGTACCATTAATCAACTCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATCATGCAGCTTCTTCGAGGAGACTTTCTGAGATCAACAAGGCTCAGGGCAAGTGTTCAAAATATCCTAGTCTGTCCATGCTTCAATTCTCCCGTCCTTGTACTTGTCATAAAGAAGAGATTTGA

Coding sequence (CDS)

ATGGTCACTGGACGTGGTTTTGAGAAGTTGGCTGATGAACTTCCTAAATTAAATTGGAAAGGAAAAAAAAGAAAAACAAAGAGATGTTTCTTATCTGAAGAAACCCAATCTGTGGCCAGTACCATTAATCAACTCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATCATGCAGCTTCTTCGAGGAGACTTTCTGAGATCAACAAGGCTCAGGGCAAGTGTTCAAAATATCCTAGTCTGTCCATGCTTCAATTCTCCCGTCCTTGTACTTGTCATAAAGAAGAGATTTGA

Protein sequence

MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI*
Homology
[Close]
BLAST of Csa3G185100 vs. TrEMBL
Match: A0A0A0L630_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185100 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDM 60
           MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDM
Sbjct: 1   MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDM 60

Query: 61  WNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI 107
           WNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI
Sbjct: 61  WNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI 106

[Close]
BLAST of Csa3G185100 vs. TrEMBL
Match: A0A0D2UID5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLS+ET+ +ASTI  +LQCALD R C TGD+WN  +       +LS+IN +Q
Sbjct: 1093 CFLSDETKPIASTIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQ 1145

[Close]
BLAST of Csa3G185100 vs. TrEMBL
Match: A0A0D2TFX4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLS+ET+ +ASTI  +LQCALD R C TGD+WN  +       +LS+IN +Q
Sbjct: 1081 CFLSDETKPIASTIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQ 1133

[Close]
BLAST of Csa3G185100 vs. TrEMBL
Match: A0A0D2TLP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLS+ET+ +ASTI  +LQCALD R C TGD+WN  +       +LS+IN +Q
Sbjct: 1127 CFLSDETKPIASTIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQ 1179

[Close]
BLAST of Csa3G185100 vs. TrEMBL
Match: A0A0D2TLP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLS+ET+ +ASTI  +LQCALD R C TGD+WN  +       +LS+IN +Q
Sbjct: 1132 CFLSDETKPIASTIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQ 1184

[Close]
BLAST of Csa3G185100 vs. NCBI nr
Match: gi|700202297|gb|KGN57430.1| (hypothetical protein Csa_3G185100 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDM 60
           MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDM
Sbjct: 1   MVTGRGFEKLADELPKLNWKGKKRKTKRCFLSEETQSVASTINQLLQCALDLRCCFTGDM 60

Query: 61  WNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI 107
           WNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI
Sbjct: 61  WNTQVDHAASSRRLSEINKAQGKCSKYPSLSMLQFSRPCTCHKEEI 106

[Close]
BLAST of Csa3G185100 vs. NCBI nr
Match: gi|778679754|ref|XP_011651193.1| (PREDICTED: uncharacterized protein LOC101209612 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ
Sbjct: 1114 CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 1166

[Close]
BLAST of Csa3G185100 vs. NCBI nr
Match: gi|659114495|ref|XP_008457080.1| (PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQ
Sbjct: 1113 CFLSEETQFVASIINQILQCALDLRCCFTSDMWNTQVDHAASSRRLSEINKAQ 1165

[Close]
BLAST of Csa3G185100 vs. NCBI nr
Match: gi|763788531|gb|KJB55527.1| (hypothetical protein B456_009G080700 [Gossypium raimondii])

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 29  CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
           CFLS+ET+ +ASTI  +LQCALD R C TGD+WN  +       +LS+IN +Q
Sbjct: 860 CFLSDETKPIASTIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQ 912

[Close]
BLAST of Csa3G185100 vs. NCBI nr
Match: gi|728844403|gb|KHG23846.1| (Gamma-tubulin complex component 6 [Gossypium arboreum])

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 29   CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQ 82
            CFLS+ET+ +ASTI  +LQCALD R C TGD+WN  +       +LS+IN +Q
Sbjct: 981  CFLSDETKPIASTIENILQCALDFRSCLTGDIWNVGLAEGDLQDKLSKINISQ 1033

The following BLAST results are available for this feature:
BLAST of Csa3G185100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L630_CUCSA1.3e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185100 PE=4 SV=1[more]
A0A0D2UID5_GOSRA2.3e-0752.83Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1[more]
A0A0D2TFX4_GOSRA2.3e-0752.83Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1[more]
A0A0D2TLP9_GOSRA2.3e-0752.83Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1[more]
A0A0D2TLP4_GOSRA2.3e-0752.83Uncharacterized protein OS=Gossypium raimondii GN=B456_009G080700 PE=4 SV=1[more]
BLAST of Csa3G185100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202297|gb|KGN57430.1|1.9e-55100.00hypothetical protein Csa_3G185100 [Cucumis sativus][more]
gi|778679754|ref|XP_011651193.1|8.0e-22100.00PREDICTED: uncharacterized protein LOC101209612 [Cucumis sativus][more]
gi|659114495|ref|XP_008457080.1|1.7e-1992.45PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo][more]
gi|763788531|gb|KJB55527.1|3.3e-0752.83hypothetical protein B456_009G080700 [Gossypium raimondii][more]
gi|728844403|gb|KHG23846.1|3.3e-0752.83Gamma-tubulin complex component 6 [Gossypium arboreum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007020 microtubule nucleation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0000922 spindle pole
cellular_component GO:0045298 tubulin complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043015 gamma-tubulin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G185100.1Csa3G185100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G185100Cla013164Watermelon (97103) v1cuwmB243
Csa3G185100ClCG05G010880Watermelon (Charleston Gray)cuwcgB230
Csa3G185100Lsi05G002990Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G185100MELO3C020298.2Melon (DHL92) v3.6.1cumedB238
Csa3G185100Cla97C05G093180Watermelon (97103) v2cuwmbB215
Csa3G185100Bhi01G001340Wax gourdcuwgoB283
Csa3G185100CSPI03G17440Wild cucumber (PI 183967)cpicuB120
Csa3G185100CsGy3G017490Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G185100Cucumber (Gy14) v1cgycuB132