Lsi05G002990 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G002990
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSpc97 / Spc98 family of spindle pole body component, putative isoform 4
Locationchr05 : 3826646 .. 3833485 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGTTTGGTTTCTTTTTTTGGGTTTTTTCAGCCTTCTTAGATGACTGTGGTCTTGAGTTTTTGTAAATTCCTCATTTGGCTCTGATAGAAGGTCCTATCTTGGTTTAGTTCTGCAAAGTTTTGTTTTGGATTCTCTGAGATATTTGGTTTGACTTGCATAAAGAGATTCCAAAGCTTTTTTGATTGGGTTATTTGTTATTTTTAAGTTGCAGAGTTTTTTGAGGTGTTACGTGCAGAAATGGCTTGAAGTTTGAGAGTTTGATAGAATCATTCTTTTAGTATTGTGTAGCTTTCTGTTTTTGTTGCATCCGATTGCTTTTTATTTGGTTCTAAAATTTTTTCTTATTGGTTGGTGATTGGTTCTTGGTTTTATTTGGGAGTTTCGAAGCAGCTATCGGTTTTTCAGTCTTTGGTGGAGGCCTCATCCATAGTTCTTTCATTTTTTTGCAATCGCTCGAAGTCTTTCAGTCGAAGATTTTGGATTTGGCTCTTTATTTATTTAGTTTTCTTGGGTAATCTCTTTATGGTTGTGTTTGTTATTTGTTTTTTTTTTCTTCTTTTTCTTTTTCAATCCCTTTGGAGTTTGTATCCCTTGAACATTTATTTCTTTTTCTTATATCATTGAGAAATTGTTTCTGGTTAAAAAAAATCAGCTTTTAATTCCATTAATAGTTGTGGAGATAAGAGGACGTTCCAAGGGAATAATATTTGTTTAGCAAGCTTGAATTAGTTGAAGTTGAATAGTTCTTAAAATTCTTGGAAGTATGAATGGAACTTATGCCTTTTGCTTCAAATTTTGATTGACAGGACATGGTTCTCTTGGTCCGTCAGAATCGCCATTCCAAACTTATTAATCAGGAAATCCAGCATTTCAATGTTTTGGTGAAGACTAGGTGCTTCTGTTTTATTGCAAATTTCTCTTTCTTTGTTTTACTCATAACGCTGGCATTCTCTTACTCTTAACATGCATTCAGAACTTAAATTTTAATTTCTGTTTCTGTGGTTATCATGTGTACTTCTGTGTTCTGACTATTTTTGTCCTTTCATTCTTTCATGATCAGGCATGAAGTCAACCATTTTGTGTGTGTGTTACAGCATTATGTGGAATCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTAAAGGTGAGAATCAATGTTTTATCTCCTGTATTAGTGTAAAATATTATGTTACGGCACTTTTTCTTGTTCTTCAGGATTGTTTATTGAGTTGTTCTAGGTTATTTGTTTTTCTTCGAAGGACATCTCCTTTATTTTTGTGTACGACCAAAAGAGTACCCCTCCCTTCTCATCTTATTTCCAAGACTTCACGTGTTCTTTATCCATCTTCTGTCCAAAATTTTAGCTCTCTCGTATTTATTGTTTACTTTAATATCATTGAATCTGTAAAGAAATAGAACTAATATGACGAGGAGATATTTGGATTTTCTTGGGTGCTTGTTTGGGATTATTGTGAAAAATAACTTTTTGATTTTGTTTCTAAAACCATGTTTAAAATTATGGTTTGTTGATTTATAAAAGTCAAAGTTCTTAGATTTATGATTTGAGGAGTGTTATTTTATTATTTATTTATTTTTTTTAGTACAGAGTGGTTGTTATAGTACATAGTAAATTTAGAAAATACGTGCAAACAACAAAATATAGTTTCCAGTCTACCATTTTTTGTTCTCAATATCATTTTTTCTAACAAGTTATCCTGTAAAACAAGCTGCTAGATTTAAAAACTAAACAACGTAGGTTTGAAATAGGCCTTAGCTTCCTGAATTACTACAGGGATTCTAGTCATCACTATCACGATTTATTGGTTCAGACTGCCAAATTTCAACACTTACATTGTTACCTGATACTGTTTTATAGAATTGCTATCTGATGCTTGACATCGATTAAATTTTCTTCATCTTAATTTCTCAGTGTTTTAAGACATCTTATATCTTGACCATTCAATGCATCTCATTCTAGAGTCTAGATATCATTGTTCTTTATATCAAGAAAGCTGGAAAACATGTTACCCAGAAGTCCCCATCTTAACAATTAATACGGGAGAGAAGTATTGATCAGTGCTTTTATTTATCATTTGCATCTTCGTTACATGCATTTAAACACTCTGGTTTTTTCTTCATACGATATGCTTCTGTTTTATGTAGGCAAAAGATATGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACAAACGTAAGATTCTATCTAAAAGTTTGAAAGATCTTTGGGAACTGGATAGTTATTTTTGCATTTTAACTTTATGTTCTTTTAGTAAGAATTAACTGCATCTTTTTTTTTCTTCATAAGAAGAAACAAGTTTTGTTGGATAAATCTAGGATTCAAAAGAGGGGACTCAGGGAGGAATTCCAAGTTCTAGACAACGAAGGTTACAAACATTTCCCAGTATTACAAGCTCAAATTAAGTCTAGGTTTGTAAAAAAAAAAGGTTTTTGAACCTTAAAAAGTCAGGATGAAAGAGACAACCATGCAGACGCACCAATCAGGAAAAATTCTATCAATGACCTTGAACTTCCTGTGATGTCTTTCAACCAAAGCTACATTAGAGTATGCTCGACAATGTTTAGCCACAATGCTTTTGCCATTCCTTCAAAAGGATAACCACCCATGGACTGATGAAGGAACGATGCAAGATCATGGGAAATTGAAGAAACTTTTTTTGTCAAATAAGTGAAGGGGTGTCTTTTGGAAGAGAATGCCCAGTGATGCAAGATATCTTTAAGTAGCACAATGAATAGCGCTCTAATTTCAGAGAAGGGAGAGATAGCAAGCGTCCTTTCTCCCCATGAATTTTGTGCACATGGAGCACCAACTAGACTGAAGGAACATTTTAGAAAATTTTCTCTGCACTTAGCTCCCTGTTTTGATGCCTCAAGAGCCAAAGCTCATAGAAAAGTAACTCTTTTAGGTACCTCTCTTTCCAGATGAGCTTGCACAGAAGGCTGGGGAAGATGTAATCTTGTAATTGGAAACTTTGAGCCATGACTTTTAGCACTACCGCTCCATTCCCTTGCTTTCCCTCACGTGCTAGGGACCTAACCCTTTCTTCTCAGATCTGAGGGAAGAAAATAAGATATAGCTACCTTTTTTCAGATTTGAGGGAAGTGAGATGTGGGTTCGTTCCTATTTATTCTTGGGAACTTTTGTTTGCTTAATTTGGGTTTTTTCTTAATGTATTTAATTATGAATTTCTGTTAATTAATTTTAGTGAATTTATAGATTAGGGGCTAGTCAATTACTTTTGCCATGTATACAAATATATATATATATATATATATTATTAATCAACTCTTATGCGAAGGAGGGAATAATTAATCTATTACATAAGAGTTGACTAATAATAAAAATTTTGGTTATCATTGCCACCCATTTGGAACCTCCATTGTCCCTTTAGCTTCCAGGGGTTAGAGCTTTCTGCTGAATGAAGTTGGACTTCCAGCTATTTGCCTAGATTAGTTGTTGATTGGGTGGTAGAGGCTCTGAATGGATGGTCCTGGAAAGCAAAGCAAAGGTTTTGTTGAGAAACTTCTAGAGCTCTTCTTGTTTGGAGCATTTGAAAGAGAATGAATCAAAGAATACTTTTTTTTGCCTTCTTTTGTAATTGTGGACCACTCATGTTCTCCTTGTGGAGTCTTGCTGATAAGAAATTCTTTTGTAATTACAACTCATCTATGATCTTTCAAGACTTTGCTCCATTTGTTGTTTGGGTGGGGCCATCTCATCCCCCTTGTACCTGGACTATTTTTTTCCTGTCTGAGTTAATATATTCTTTCCAATTAAGGACCAAATACAGGGAAGAAAATGCCACTTGAAATTGAAGGACCAAATAATATAATCGTGGAAAACTCAAGGACTAGAAAGTTAATTTGTTCAGAATAAAAGTAAATGAGGGCTTGTTGGACACGTGTCTAAGGTGTGCTTGACTTGTTCAAGTGGCGTAGAGGTCTGCAACATTGGACTTGACCTCAAATCTTCAAGCAACGTATGTGCGCTTTCTAGGTTGTCTTTGCTAAAAGAAGTGATTTAGAAACATATTCATTCATTTTTCTTCATTGTCAGACTGGCGAAACTGGAAGCATAGAAGTTTCTTGAATTAATTAAACTGAGTTCCTAATTGATGTAAGAAAAATGAGGTTAATTGGATAATTGGGTAATAGTCTAGGTTAATTTCCTTTTTATCCCCACTTATATTAAAACTCTATAAATAGGAGTCTTCCCCCCTCATGTATGGACAATGAATAATAATACTTTTCCTTCAAGAATTCTCCAAGATTCGTAGTCTACATCAAATTGGTATCAGAGCACCCTCGTGAAGGAATCTAATGGTCGGAAAAGGCTCCGGTAAGCTCTCCAACTCTCAACCTCAAGATGCGGAAGCATCCCTCTCTACTTCTCCTCAAACCTTGAATCGACGAATTGGAAATTTAGAAACTTCTGTGGGTGGTTTATTGGACAATATGATAGTAATGCAAACCTCAATGGCCGGGCTGCAGCAAGCTATAGAAAAGCTAACATTGGAAGTGGGAAGGTTGGTCAATAATCCACCAAGAATCAACCAAGAAGCTCCTACATTCAACCAACAAAATCTAGACAACAGAAGGCAGCTTCAAGATCTTCAGAAAAGGCAAGGAAATAACCGGCAGGTCTTATCAAGAAACAAAGAAAATAACCAACAAGTTCTTCCAAGAAATCAAGAACAGCACCATAATTTTCTGCGTGATCAAGAACAACACTTTAATCCAGTCTATGGCCAAGAATGTGGAAACTTTTACCAAGAACTTCAACAACGTGGCCAACATGCTCAATTTAGACGGCAAGAAGATCAACCCCAAATCCTACAAAGGTTTCAAGAAAGAGCATGAAGTCCACCAAGACTCTTTGTCCCGAGGGATCAACCGGTTGTAAACTTAACGCTCATAGATCTTCCTGGGTTGACAAAGGTTGGTGTAGAAGGACAACCCAAGTCTATTGTTGAAGATATTGAAAACATGGAACATCTTGATAGAGGGCAGCCTGGTGGAGATGGAATATGTGGAGTTTTTGACCATCAACTACCTGCTACCCTGAAGAAATCACCTTTTGATCGTCATCTTTCTATTAAAAATGTCCAAAAAGTTGTGTGTGAAACTGGTGGTTACCAACCTCATTTAATTGCTCTAGAACAAGGATACAGGAGGCTTATTGACAATCAGCTATTTCAAGGGTCCGGCTGAAGCTTCTATTAATGCTGTGCATTTTGTATTGAAAGAACTTGTTCAGTAAATCTATAGTTGAAACAGAGTAATTAAAGAAATTTTCAACACTTCAATCTGACAATGCAGTAGCTGCAACAGAGGCACTTGATGAACTTGATGATGAAAGATTTGATGAACTTGATGGAAATTTTATGTCTTGGATTACCTCTTTGATCATAATATTTTTATTTAAGAGGTAGGATGTTGGTTTGGCCATATGCCATTGAACAAGTTTTTTTTTTTTTTTATTTCGTGATTATTTCATTGTTTTTCCTTTTTAAAACTCAAGGATGAGTTTTCTTTTTGGAGGGGTAGAATGATGTAAGAAGAATGGGGTTAATTGGATAATTGGGTAATAGTCTAGGTTAACTCCCTTTTTACCCCCACTTATATTAAAACTCTATAAGGAGTCTTCCCCCTCATGCATGGATAATGAATAATAATACTTGTCCTTCAAGAATTCTCCAAGATTCGTAGTCTACATCACTTATATTTCTTATGTATACCTTTTGCAGATGTTTCTTATCCGAAGAAACCCGATTTGTGGCTGGTATCATTAATCAAATGTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATAATGCAGCTTCTTCAAGGAGACTTTCTGGGATCAACAAGTCTCAGGTAAATTATTTAAGTAGAGATTCCTTATCACGACCATGGAAGGTAAGGAGCAATCAATTTTAATTTTGCTTCACACTTCAAATCTAGGGCAAATGTCCAAAAAGTAAGAATTAACTGCTTGTATGTCCATGTTTCAAGTCTCCCTTGCTTGTACCTCGTAAAAAATGTAGTGTAGTCTTATGGAAAGCCATTTATTAAAATGTGCACGAAAGAGAAGTTATCTTCTTGCATTGTTTATCATTTGGAGTTCATGTCCTGTTCTTGTGTTTTACTTGACATGACAACTGTTTTTGACTATCATGTTCATTACATTTATTTTATAATTTAGAAATGCTAAATGTAACTTTCGAATCGACTAAAGTACTCCTTATTCCCCATTCTTGAGATCAGTTGACATTTATCAATATAGTAGTGAAAACACGTCTTATAAAAACTTCTTTGGCAAACATGCTTTGGTTGTTACTTGGTAGAAATTGACAAATACAGTGCAAATTACCCATCATACCTGGAAAATATATAATATCCTTTCCTGTTATTATCTCAAAAGGAGAACTGATAAGGAGGTTAAACTGTATGTCATCTTACAGGTACTTACCATAAAGAAGAGATTTGACACAAACATGAGGGAATTGCACCTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTTTGGGCTATCTCGACTTTGGGAATGTCTCAATTACAACTATCACTACACTGACACTGGTAATGAAATGAGTTACTATACTTTCTCAGTCTAATGGTAGATTTCAAACCATAAAAGATAAGAAGAGATCTTTATAATGTTTGTGAAATTGAATTAGATAGGTTCGAGGCGGAGTAGTTTCTACGACGCTTGA

mRNA sequence

ATGCCGGACATGGTTCTCTTGGTCCGTCAGAATCGCCATTCCAAACTTATTAATCAGGAAATCCAGCATTTCAATGTTTTGGTGAAGACTAGGCATGAAGTCAACCATTTTGTGTGTGTGTTACAGCATTATGTGGAATCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTAAAGTACAGAGTGGTTGTTATAGCAAAAGATATGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACAAACGATTCAAAAGAGGGGACTCAGGGAGGAATTCCAAGTTCTAGACAACGAAGGTTACAAACATTTCCCAGTATTACAAGCTCAAATTAAGTCTAGTCAGGATGAAAGAGACAACCATGCAGACGCACCAATCAGGAAAAATTCTATCAATGACCTTGAACTTCCTGTGATGTCTTTCAACCAAAGCTACATTAGAGTACCTCTCTTTCCAGATGAGCTTGCACAGAAGGCTGGGGAAGATGTAATCTTATTAGGGGCTAATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATAATGCAGCTTCTTCAAGGAGACTTTCTGGGATCAACAAGTCTCAGGTACTTACCATAAAGAAGAGATTTGACACAAACATGAGGGAATTGCACCTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTTTGGGCTATCTCGACTTTGGGAATGTCTCAATTACAACTATCACTACACTGACACTGGTTCGAGGCGGAGTAGTTTCTACGACGCTTGA

Coding sequence (CDS)

ATGCCGGACATGGTTCTCTTGGTCCGTCAGAATCGCCATTCCAAACTTATTAATCAGGAAATCCAGCATTTCAATGTTTTGGTGAAGACTAGGCATGAAGTCAACCATTTTGTGTGTGTGTTACAGCATTATGTGGAATCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTAAAGTACAGAGTGGTTGTTATAGCAAAAGATATGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACAAACGATTCAAAAGAGGGGACTCAGGGAGGAATTCCAAGTTCTAGACAACGAAGGTTACAAACATTTCCCAGTATTACAAGCTCAAATTAAGTCTAGTCAGGATGAAAGAGACAACCATGCAGACGCACCAATCAGGAAAAATTCTATCAATGACCTTGAACTTCCTGTGATGTCTTTCAACCAAAGCTACATTAGAGTACCTCTCTTTCCAGATGAGCTTGCACAGAAGGCTGGGGAAGATGTAATCTTATTAGGGGCTAATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATAATGCAGCTTCTTCAAGGAGACTTTCTGGGATCAACAAGTCTCAGGTACTTACCATAAAGAAGAGATTTGACACAAACATGAGGGAATTGCACCTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTTTGGGCTATCTCGACTTTGGGAATGTCTCAATTACAACTATCACTACACTGACACTGGTTCGAGGCGGAGTAGTTTCTACGACGCTTGA

Protein sequence

MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREEFQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSFYDA
Homology
[Close]
BLAST of Lsi05G002990 vs. TrEMBL
Match: A0A0A0LBK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185110 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + DMVL VR+NRHSKLINQEIQHFN+LVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS
Sbjct: 1029 LKDMVLSVRRNRHSKLINQEIQHFNILVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 1088

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDALQT 92
            LQLK      AKDMMDLESMHMAYLTDAL T
Sbjct: 1089 LQLK------AKDMMDLESMHMAYLTDALHT 1113

[Close]
BLAST of Lsi05G002990 vs. TrEMBL
Match: F6H4G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g02810 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.2e-21
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + D++ LV QNRHS L  Q+IQH ++L+KTRH+VNHFV  LQ YV+S LSH+SWCRFLQS
Sbjct: 1050 LKDLMHLVSQNRHSSLHGQKIQHLHILIKTRHQVNHFVSTLQQYVQSHLSHVSWCRFLQS 1109

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDAL 90
            L  K       KDMMDLES+HM YL D+L
Sbjct: 1110 LNHK------VKDMMDLESVHMTYLMDSL 1132

[Close]
BLAST of Lsi05G002990 vs. TrEMBL
Match: W9R620_9ROSA (Gamma-tubulin complex component OS=Morus notabilis GN=L484_009359 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1 

Query: 7   LVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYR 66
           L+  N+H++L  QE+ HFN+L+K RH+VNHFV  LQ YVESQLSH+SWC FL SLQ K R
Sbjct: 158 LISLNQHAELRKQEVGHFNLLMKMRHQVNHFVSTLQQYVESQLSHVSWCNFLHSLQHKVR 217

Query: 67  VVVIAKDMMDLESMHMAYLTDAL 90
                 DMMDLES+HMAYL D+L
Sbjct: 218 ------DMMDLESVHMAYLIDSL 234

[Close]
BLAST of Lsi05G002990 vs. TrEMBL
Match: A0A061GUQ6_THECC (Spc97 / Spc98 family of spindle pole body component, putative isoform 1 OS=Theobroma cacao GN=TCM_041157 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + D++ L+RQ RHS L  +E+ H+N+L+K RH+VNHFV  LQ YV+SQLSH+SWC+ L S
Sbjct: 1045 LKDVMHLIRQKRHSPLHEREVGHYNMLMKLRHQVNHFVSTLQQYVQSQLSHVSWCKLLHS 1104

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDAL 90
             + K       KDMMDLES+HMAYL D+L
Sbjct: 1105 FKHK------VKDMMDLESVHMAYLIDSL 1127

[Close]
BLAST of Lsi05G002990 vs. TrEMBL
Match: A0A061GUY4_THECC (Spc97 / Spc98 family of spindle pole body component, putative isoform 3 OS=Theobroma cacao GN=TCM_041157 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + D++ L+RQ RHS L  +E+ H+N+L+K RH+VNHFV  LQ YV+SQLSH+SWC+ L S
Sbjct: 1040 LKDVMHLIRQKRHSPLHEREVGHYNMLMKLRHQVNHFVSTLQQYVQSQLSHVSWCKLLHS 1099

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDAL 90
             + K       KDMMDLES+HMAYL D+L
Sbjct: 1100 FKHK------VKDMMDLESVHMAYLIDSL 1122

[Close]
BLAST of Lsi05G002990 vs. TAIR10
Match: AT3G43610.1 (AT3G43610.1 Spc97 / Spc98 family of spindle pole body (SBP) component)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-18
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 12   RHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIA 71
            +  K++ QE++  N+L+K RH+VNHFV  LQ YV S+LSH+SW +FL SL+ K       
Sbjct: 1024 KKEKILKQELRWLNILMKLRHQVNHFVTALQQYVHSELSHVSWSKFLHSLKNK------V 1083

Query: 72   KDMMDLESMHMAYLTDALQTIQKRGLREEFQVLDN 107
            KDMMDLES+HMAYL++AL+      L +E Q++ N
Sbjct: 1084 KDMMDLESVHMAYLSEALRIC---FLSDETQIISN 1109

[Close]
BLAST of Lsi05G002990 vs. NCBI nr
Match: gi|778679754|ref|XP_011651193.1| (PREDICTED: uncharacterized protein LOC101209612 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + DMVL VR+NRHSKLINQEIQHFN+LVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS
Sbjct: 1029 LKDMVLSVRRNRHSKLINQEIQHFNILVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 1088

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDALQT 92
            LQLK      AKDMMDLESMHMAYLTDAL T
Sbjct: 1089 LQLK------AKDMMDLESMHMAYLTDALHT 1113

[Close]
BLAST of Lsi05G002990 vs. NCBI nr
Match: gi|700202298|gb|KGN57431.1| (hypothetical protein Csa_3G185110 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + DMVL VR+NRHSKLINQEIQHFN+LVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS
Sbjct: 1029 LKDMVLSVRRNRHSKLINQEIQHFNILVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 1088

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDALQT 92
            LQLK      AKDMMDLESMHMAYLTDAL T
Sbjct: 1089 LQLK------AKDMMDLESMHMAYLTDALHT 1113

[Close]
BLAST of Lsi05G002990 vs. NCBI nr
Match: gi|659114495|ref|XP_008457080.1| (PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 8.5e-33
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + DMVLLVR+NRHSKLINQEI+HFN+LVKTRHEVNHFVCVLQHYVESQL+HLS CRFLQS
Sbjct: 1028 LKDMVLLVRRNRHSKLINQEIKHFNILVKTRHEVNHFVCVLQHYVESQLAHLSGCRFLQS 1087

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDALQT 92
            LQLK      AKDMMDLESMHMAYLTDAL T
Sbjct: 1088 LQLK------AKDMMDLESMHMAYLTDALHT 1112

[Close]
BLAST of Lsi05G002990 vs. NCBI nr
Match: gi|731397657|ref|XP_010652953.1| (PREDICTED: uncharacterized protein LOC100255993 [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1 

Query: 1    MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
            + D++ LV QNRHS L  Q+IQH ++L+KTRH+VNHFV  LQ YV+S LSH+SWCRFLQS
Sbjct: 1050 LKDLMHLVSQNRHSSLHGQKIQHLHILIKTRHQVNHFVSTLQQYVQSHLSHVSWCRFLQS 1109

Query: 61   LQLKYRVVVIAKDMMDLESMHMAYLTDAL 90
            L  K       KDMMDLES+HM YL D+L
Sbjct: 1110 LNHK------VKDMMDLESVHMTYLMDSL 1132

[Close]
BLAST of Lsi05G002990 vs. NCBI nr
Match: gi|296082626|emb|CBI21631.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1 

Query: 1   MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQS 60
           + D++ LV QNRHS L  Q+IQH ++L+KTRH+VNHFV  LQ YV+S LSH+SWCRFLQS
Sbjct: 853 LKDLMHLVSQNRHSSLHGQKIQHLHILIKTRHQVNHFVSTLQQYVQSHLSHVSWCRFLQS 912

Query: 61  LQLKYRVVVIAKDMMDLESMHMAYLTDAL 90
           L  K       KDMMDLES+HM YL D+L
Sbjct: 913 LNHK------VKDMMDLESVHMTYLMDSL 935

The following BLAST results are available for this feature:
BLAST of Lsi05G002990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G002990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBK5_CUCSA1.4e-3486.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185110 PE=4 SV=1[more]
F6H4G5_VITVI5.2e-2161.80Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g02810 PE=4 SV=... [more]
W9R620_9ROSA8.3e-1962.65Gamma-tubulin complex component OS=Morus notabilis GN=L484_009359 PE=3 SV=1[more]
A0A061GUQ6_THECC1.4e-1856.18Spc97 / Spc98 family of spindle pole body component, putative isoform 1 OS=Theob... [more]
A0A061GUY4_THECC1.4e-1856.18Spc97 / Spc98 family of spindle pole body component, putative isoform 3 OS=Theob... [more]
BLAST of Lsi05G002990 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G43610.13.7e-1849.47 Spc97 / Spc98 family of spindle pole body (SBP) component[more]
BLAST of Lsi05G002990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679754|ref|XP_011651193.1|2.0e-3486.81PREDICTED: uncharacterized protein LOC101209612 [Cucumis sativus][more]
gi|700202298|gb|KGN57431.1|2.0e-3486.81hypothetical protein Csa_3G185110 [Cucumis sativus][more]
gi|659114495|ref|XP_008457080.1|8.5e-3384.62PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo][more]
gi|731397657|ref|XP_010652953.1|7.5e-2161.80PREDICTED: uncharacterized protein LOC100255993 [Vitis vinifera][more]
gi|296082626|emb|CBI21631.3|7.5e-2161.80unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043015gamma-tubulin binding
Vocabulary: Biological Process
TermDefinition
GO:0007020microtubule nucleation
GO:0000226microtubule cytoskeleton organization
Vocabulary: Cellular Component
TermDefinition
GO:0005815microtubule organizing center
GO:0000922spindle pole
Vocabulary: INTERPRO
TermDefinition
IPR007259GCP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051298 centrosome duplication
biological_process GO:0031122 cytoplasmic microtubule organization
biological_process GO:0007020 microtubule nucleation
biological_process GO:0008150 biological_process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0090307 mitotic spindle assembly
biological_process GO:0007126 meiotic nuclear division
biological_process GO:0051415 interphase microtubule nucleation by interphase microtubule organizing center
cellular_component GO:0005813 centrosome
cellular_component GO:0000923 equatorial microtubule organizing center
cellular_component GO:0008274 gamma-tubulin ring complex
cellular_component GO:0000922 spindle pole
cellular_component GO:0005816 spindle pole body
cellular_component GO:0005575 cellular_component
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0045298 tubulin complex
molecular_function GO:0043015 gamma-tubulin binding
molecular_function GO:0051011 microtubule minus-end binding
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002990.1Lsi05G002990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 3..96
score: 5.2E-36coord: 160..260
score: 5.2
NoneNo IPR availablePANTHERPTHR19302:SF37GAMMA-TUBULIN COMPLEX COMPONENT 6coord: 3..96
score: 5.2E-36coord: 160..260
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G002990Csa3G185100Cucumber (Chinese Long) v2culsiB211
Lsi05G002990CSPI03G17440Wild cucumber (PI 183967)cpilsiB209
Lsi05G002990Cla013164Watermelon (97103) v1lsiwmB361
Lsi05G002990CsGy3G017490Cucumber (Gy14) v2cgyblsiB198
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G002990Wax gourdlsiwgoB431
Lsi05G002990Cucumber (Gy14) v1cgylsiB322
Lsi05G002990Cucurbita maxima (Rimu)cmalsiB249
Lsi05G002990Cucurbita maxima (Rimu)cmalsiB440
Lsi05G002990Cucurbita moschata (Rifu)cmolsiB237
Lsi05G002990Cucurbita moschata (Rifu)cmolsiB430
Lsi05G002990Cucurbita pepo (Zucchini)cpelsiB470
Lsi05G002990Cucurbita pepo (Zucchini)cpelsiB511
Lsi05G002990Melon (DHL92) v3.5.1lsimeB368
Lsi05G002990Watermelon (Charleston Gray)lsiwcgB332
Lsi05G002990Cucumber (Gy14) v2cgyblsiB199
Lsi05G002990Melon (DHL92) v3.6.1lsimedB384
Lsi05G002990Silver-seed gourdcarlsiB158
Lsi05G002990Silver-seed gourdcarlsiB700
Lsi05G002990Cucumber (Chinese Long) v3cuclsiB231
Lsi05G002990Watermelon (97103) v2lsiwmbB329