Cla012480 (gene) Watermelon (97103) v1

Overview
NameCla012480
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionrRNA biogenesis protein rrp36 (AHRD V1 *-*- RRP36_SCHJY); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947
LocationChr8 : 642315 .. 646073 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTACATAGTTGGTCGTCTAAAGTAATCATTGGAGTGGTCATGCTTAGATGATCGTTGATAGAGTTGATCATTAGACGTGATATTCATTAGAGTTGTTAGAGGCGATTGTTGTAATTGATTGTCAGACTCAACCAAATAGAATTGAACTGAAAATTTGTTGTTTTACTGAAGACTCAGTTCAGTTTAAAATAATAAGGAAACTGAAAATTTCGGTTCGGTTTGATTTTAGATTCGAAAACCAAATGTAAATGAACCGAACCGTTATCATACATAGTTCCGGGTCATTGAAATTTTAGGTTTGCCTTTGCTGTCCTCCGATTTGCGTCTCAACGTCTCACAGTGACCGAGTCACCACCTCACTCGTCTTTTCTCTTCTCCTCGACGTCCTCGTCTCCGGCCACCGTCGACCCCGTCTCCCTCCGCCCCCTCGATTTCTCCTCAGTTCTCAAGAGTAGCGACTCACACCGTAAAGACTATTTTGTAAAATTGGTTTTACGATTCAGGGCCAATATTATCAATCTTGGGACTGGAATGAAGAAACATGGTAGTTCCGTTCCTAGCTCTGGCAAAAAAATCATGGAGGAAGAAAGTGAAGATCTTGAATCTTCTTCCTCAGACGATTCTCTTGACTCGGTATTTATTACCAGTTAAATATATGCTTGTGTTACATTTTTTTTAAAAAGGAATTCTTTTATTTGCAAGTTCATGTTCACTGTATTGTATAGGAAGAGGAGAATATAGAGCGTGAACTTGCAGATGTAACTTTTGAAGAGTTACAGAGAGCACGGTCTGATGGATCACATTCGATGTACCAAAAGACCAAAAAAGAGAAGAAAGGTGGGCGAGCAAACAAGAACAGGTAGCTTGTGGGTATTGTTTTTGTTTTCTTGATTTGTCTTTTACAACTTGGAAGTTAATGGAGTACATGATTGTAAATTCTTTGTGAAGGCCAATGGAGGTTAGCAGCAGGAAACCAGTTAGTAGGTTTAGGGAGGTTATTCAGGCTCCTAAAAATGTGAGTTGGGTTATTCGTTTTTTGTTTGTTTATTATCCAAATTTATGGCTTTTGCATTGACTGTATGGAGCCAAGTTTACTGAACTATGAGATTCATATCTCACTTTAATGGAGTTCAAATGCAACCTAAGAAATAGTTACATCTCATCTCCGCACTAATTGGAGCTTGTTTCATTGTTGATTGCCGGTTTTCAGGTGGTACGTGATCCACGTTTTGAATCTTTATCTGGTAATCTTGATGTTGATGGGTGAGTTTTTCTTGATACGAGGTTTGATTAACTCTTTGACGTGTTGAAAGGAATGGTGTCACCTAACATAAACAATTTTTGTTTTAAATCTTTATTCACGCTATTTACTTTACAATATCTTTCTTCTTTGTTTGAAATTGTAATGGCATGTTCTTATGTTTCTTTGAATCTTACAGATTTAAGAAGAGATATAGTTTCATATACGAGAATAATCTTCCGGCTGAAAAAGAGGTCTATATTTTCCTTGTCCTAGATCTATCCCCCTATTGTTATCGTTTTTCATTTTTAGATTCTAAACCTAAACTCACTAACCTGGATGCATTTTGTGAATTGAAACTATCACTGGTACAACAGGAATTGAAGAAGCAGTTAAGGAAAACCAATGATCCAAATGTTGTTGAAGAACTAAAGAAACAATTATCTTGGATTGTAAGTATAATTCTTTTGATTATTTAACAAGTCTCATGTTCTTATTGTTTATTTATGTAATGCCATAAAAAGGGATGTTTTATGGTCCTTAATGCTAAAAATGGAAGAAAAATTAGAATGAAGTTTGTACTTGGTGAGAATTAGGGCAAAAAAAAAAGCTCAAACTTATTTTTTAGGTTAAAAACAAAAACTCCTTCATCATTACCAAGTTTTGTTTGATCATAATCTCTTATTATTTGTGCACGCTGGTTCCCTATATATAGATTTTAGATTGTTTTCATGTATTTCAGGACAAGCAATTCAAATCCGACTCCACAAAACGTGTTGATGCTGCAATTCTGGCCAAACATAAGAAGAAAGAGAGAGAAGCAGCCAAACATGGGAAAAAGCCGTTCTATCTTAAGAAATGTAAAACTTCTCTTCCTCTCTTTTTGAATGAGTCTTTCCCTTAAAGGTGCGCACTTAGGTTATGGTCATCTGCTTGAAACTTTTGAACCTTGGGTGACCTATGGTAATTATTTTCTAATAGTAGTCATGCAAGCAGGGGGGGACCTTTGAACTTTGTACTTATGTGCTTGTGATTAACCCGTGATTAGCACAAGACATTAGTATTTTAGCTGGATCGAATTTGATAACTCTGAGTTGTAGAACATAGGTTTGGTGCTGGTATTAATTTGCTTTCTGGGGGGGGAGGAAACCAGGCCTGGACATCAAGGGAAAGGGAAGTTTCTGCAGTTTATTTCTGACATAAACACACTCCAAACATGGTTTAGAACACGTGATGTGAGATGTTTCATTGTGTTGTTATTTTTTGAAATATTGGGCACATTGGGTTTAGAATATGTGAGGGATATGGTTTTGTAGAAATGAGAAAATTATGAAAAGAAAGGATAGGTTTTCATAAAAATTGGAATTTGTATAAAGTAATAAAAGGCATAAAATTCCATAGAAATTATATTATAAAATGAAGGAGATTATGCAGATTTCACTTGATAAATCTTACTAGCTTGATGTGAAAAGATGTGAAAGTGATAAGTTTGGCTCTTTAGGACAACCCGCCTGACCCTACAACATTTTGGTGTCAAGAATCATCTTTGGTTGTCATTTATTTATTTATTTTTTTGTTTGAGTACAACAATTATGGGACGAGAGATTGAACTTTCGACCTTTTGAGAGGAAGACCATCTCAATTACCATTGATCTAAGCTCACTTTGGCACTTGGTTGTCATTGATTGTGCTAATCACGACGATTTATTAAAAGAGTCGTATCTGGTTTCTTGTTAGATTTTATGTTTCTATTTAAGCTTTAGTTTAGGAAAGAGAAGGAGGGACCGAGTGATATAAATATGCAAGGGTTGAGGGCCATAGGTGGGGGAATTCATAACTGTGATTTTGTGGTGACTGACCATTGGATTTGGATAATTATACTTTTTCCATAGGTGTGTTAGATTGGCTCTTAAGGCCATTTCAGGAGGATAGAGTATCTTTTTGGTATTTCCTGAATTGTAGCTGTTGTTGAGCATTGTGGAGAGGCGGGAGCTGCCAAAACTCCCTTGGCATTGCCAAAATAGTGAATACATAATTTGACTATCTTATATTGGCTTTATTTTTGTATGCTCTTGTATTATTTAATTTATCACCATGAAAGTAAAGTTATTCATAGAAACAAGGTAACAAATTCTTAAAAAGAATTATTTTGATTAATGGGAAAGCCCATTATATTTAGTGCTTTAAGTAAGATGCTTCACTTGGTGGTTTTACCTTTTTGTAATAGCTGGTGACACTGTCTTGTTTTTTTCAGCTGAAATTCGAAAGCAAAGGCTCGTCGAAAAATACACCAGTCTTAAGGTATGAATTTGTCATTTCTCAACATACTTGTATTTCAACATGGTCAGTTCAATGCTATTTATGCTTCTGAATTGGCAATTAACCATTGTGGAGTTTGAACAGTCCACTGGGAAGCTTGATGCTTATGTGGAAAGGAGGAGGAGGAAAAATGCTGCAAAAGATCGTAGATACATACCATATCAAAGATCTAGTAAGCTTGATGAGCAAGATTGA

mRNA sequence

ATGATCTACATAGTTGGTCGTCTAAAGTTTGCCTTTGCTGTCCTCCGATTTGCGTCTCAACGTCTCACAGTGACCGAGTCACCACCTCACTCGTCTTTTCTCTTCTCCTCGACGTCCTCGTCTCCGGCCACCGTCGACCCCGTCTCCCTCCGCCCCCTCGATTTCTCCTCAGTTCTCAAGAGTAGCGACTCACACCGTAAAGACTATTTTGTAAAATTGGTTTTACGATTCAGGGCCAATATTATCAATCTTGGGACTGGAATGAAGAAACATGGTAGTTCCGTTCCTAGCTCTGGCAAAAAAATCATGGAGGAAGAAAGTGAAGATCTTGAATCTTCTTCCTCAGACGATTCTCTTGACTCGGAAGAGGAGAATATAGAGCGTGAACTTGCAGATGTAACTTTTGAAGAGTTACAGAGAGCACGGTCTGATGGATCACATTCGATGTACCAAAAGACCAAAAAAGAGAAGAAAGGTGGGCGAGCAAACAAGAACAGGCCAATGGAGGTTAGCAGCAGGAAACCAGTTAGTAGGTTTAGGGAGGTTATTCAGGCTCCTAAAAATGTGGTACGTGATCCACGTTTTGAATCTTTATCTGGTAATCTTGATGTTGATGGATTTAAGAAGAGATATAGTTTCATATACGAGAATAATCTTCCGGCTGAAAAAGAGGAATTGAAGAAGCAGTTAAGGAAAACCAATGATCCAAATGTTGTTGAAGAACTAAAGAAACAATTATCTTGGATTGACAAGCAATTCAAATCCGACTCCACAAAACGTGTTGATGCTGCAATTCTGGCCAAACATAAGAAGAAAGAGAGAGAAGCAGCCAAACATGGGAAAAAGCCGTTCTATCTTAAGAAATCTGAAATTCGAAAGCAAAGGCTCGTCGAAAAATACACCAGTCTTAAGTCCACTGGGAAGCTTGATGCTTATGTGGAAAGGAGGAGGAGGAAAAATGCTGCAAAAGATCGTAGATACATACCATATCAAAGATCTAGTAAGCTTGATGAGCAAGATTGA

Coding sequence (CDS)

ATGATCTACATAGTTGGTCGTCTAAAGTTTGCCTTTGCTGTCCTCCGATTTGCGTCTCAACGTCTCACAGTGACCGAGTCACCACCTCACTCGTCTTTTCTCTTCTCCTCGACGTCCTCGTCTCCGGCCACCGTCGACCCCGTCTCCCTCCGCCCCCTCGATTTCTCCTCAGTTCTCAAGAGTAGCGACTCACACCGTAAAGACTATTTTGTAAAATTGGTTTTACGATTCAGGGCCAATATTATCAATCTTGGGACTGGAATGAAGAAACATGGTAGTTCCGTTCCTAGCTCTGGCAAAAAAATCATGGAGGAAGAAAGTGAAGATCTTGAATCTTCTTCCTCAGACGATTCTCTTGACTCGGAAGAGGAGAATATAGAGCGTGAACTTGCAGATGTAACTTTTGAAGAGTTACAGAGAGCACGGTCTGATGGATCACATTCGATGTACCAAAAGACCAAAAAAGAGAAGAAAGGTGGGCGAGCAAACAAGAACAGGCCAATGGAGGTTAGCAGCAGGAAACCAGTTAGTAGGTTTAGGGAGGTTATTCAGGCTCCTAAAAATGTGGTACGTGATCCACGTTTTGAATCTTTATCTGGTAATCTTGATGTTGATGGATTTAAGAAGAGATATAGTTTCATATACGAGAATAATCTTCCGGCTGAAAAAGAGGAATTGAAGAAGCAGTTAAGGAAAACCAATGATCCAAATGTTGTTGAAGAACTAAAGAAACAATTATCTTGGATTGACAAGCAATTCAAATCCGACTCCACAAAACGTGTTGATGCTGCAATTCTGGCCAAACATAAGAAGAAAGAGAGAGAAGCAGCCAAACATGGGAAAAAGCCGTTCTATCTTAAGAAATCTGAAATTCGAAAGCAAAGGCTCGTCGAAAAATACACCAGTCTTAAGTCCACTGGGAAGCTTGATGCTTATGTGGAAAGGAGGAGGAGGAAAAATGCTGCAAAAGATCGTAGATACATACCATATCAAAGATCTAGTAAGCTTGATGAGCAAGATTGA

Protein sequence

MIYIVGRLKFAFAVLRFASQRLTVTESPPHSSFLFSSTSSSPATVDPVSLRPLDFSSVLKSSDSHRKDYFVKLVLRFRANIINLGTGMKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSHSMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGFKKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILAKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRYIPYQRSSKLDEQD
Homology
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BLAST of Cla012480 vs. Swiss-Prot
Match: RRP36_NEMVE (Ribosomal RNA processing protein 36 homolog OS=Nematostella vectensis GN=v1g245966 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-35
Identity = 90/244 (36.89%), Postives = 136/244 (55.74%), Query Frame = 1 

Query: 106 ESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSHSMYQ-------------- 165
           +S D ES + D S + E E+++ EL+ + F ELQ  +       Y               
Sbjct: 7   DSSDDESPTDDCSDEGEVEHLKDELSQIPFCELQDLKDKIGSKKYNLAIHGIMEERTQGI 66

Query: 166 ---KTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGFK 225
              +TKK+K  G      P E+SS++ V + R+V+Q  K + RDPRF+ LSG  + D F+
Sbjct: 67  PDLETKKKKNKG------PQELSSKQRVPKLRKVVQVKKKMGRDPRFDDLSGKFNEDLFR 126

Query: 226 KRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILAK 285
           K YSF+ +  +  EK+ ++K+L+KT +    + L   L  +++Q +S  +         K
Sbjct: 127 KSYSFVNDIRVE-EKKSVEKELKKTKNAEKRKNLNDLLKVMNQQERSRKSAEAKRESKKK 186

Query: 286 HKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRYI 333
            K+ ERE  + GKKPFYL+KSE++K  L EKY  LKS GKL  Y+ +RR+K A+KDRR++
Sbjct: 187 IKETERELVQKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYLTKRRKKTASKDRRHV 243

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BLAST of Cla012480 vs. Swiss-Prot
Match: RRP36_SCHJY (rRNA biogenesis protein rrp36 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rrp36 PE=3 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-32
Identity = 83/255 (32.55%), Postives = 138/255 (54.12%), Query Frame = 1 

Query: 104 EEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSHSMYQKTKKEKKGGRAN 163
           E ES D  +  S++  D E  + +R+L  + F EL  A+        + T  +K G + +
Sbjct: 37  EVESTDEANDESEEKTDLE--STQRQLKSIPFSELLEAQRALKSEKVKFT--QKNGAKLS 96

Query: 164 KNR-----------------------PMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSG 223
           KNR                       P+E+SS++ V RFREV+  PK + RDPRF++LSG
Sbjct: 97  KNRRRHESPSDSEDDDDDRNDRSKHAPVEMSSKRAVPRFREVVHVPKPLRRDPRFDTLSG 156

Query: 224 NLDVDGFKKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKR 283
           NL+VD  K  Y F+ E  L +E ++L+++L+   +    E +K+ L  +  + +      
Sbjct: 157 NLNVDKVKNNYGFVMEYRL-SEIKQLEQELKSCREQERRERIKEALKSLRSKLERRKEDE 216

Query: 284 VDAAILAKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKN 336
             A +L +H++ E+E  + GKKPFYLKKSE +K   ++KY S++ T  LD Y+E+++++ 
Sbjct: 217 RTARVLKEHRQSEKEKIRQGKKPFYLKKSEQKKLLQLDKYKSMEGTKALDRYMEKKQKRR 276

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BLAST of Cla012480 vs. Swiss-Prot
Match: RRP36_SCLS1 (rRNA biogenesis protein rrp36 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp36 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31
Identity = 92/270 (34.07%), Postives = 148/270 (54.81%), Query Frame = 1 

Query: 93  SSVPSSGKKIMEEESEDLESSSSD-------DSLDSEEE---NIERELADVTFEELQRAR 152
           SS  S+  +I  +++E+ ESSS +       ++ +SEEE   +    ++     + Q   
Sbjct: 30  SSSDSAPSEIGRDDNEEEESSSDETEDEVEEEASESEEETSNDAAASISFGALAKAQATM 89

Query: 153 SDGSHSMYQKTKK------------EKKGG--------RANKNRPMEVSSRKPVSRFREV 212
           S  S    +K+KK            E+K G        R++KN P E+SS+K VSR REV
Sbjct: 90  SKPSKRDSKKSKKSNADGWEDNEATERKAGKKDQRDFTRSSKNAPTEISSKKAVSRRREV 149

Query: 213 IQAPKNVVRDPRFESLSGNLDVDGFKKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEEL 272
           +   K  +RDPRF+   G +D+   +K Y F+ +     E ++L+K ++KT D +  E+L
Sbjct: 150 VPVKKREIRDPRFDPTHGPVDMGKIEKVYDFLVDYR-EDEIKKLRKTIKKTKDEDEKEKL 209

Query: 273 KKQLSWIDKQFKSDSTKRVDAAILAKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTS 332
           K+ L  ++ + K+D+ KR    IL KH+K+E+E  K GK P+YLKK+E +K+ L++ Y  
Sbjct: 210 KRDLLSMESRKKTDAKKRKAREILDKHRKEEKELVKEGKTPYYLKKAEQKKRVLLDTYGE 269

[Close]
BLAST of Cla012480 vs. Swiss-Prot
Match: RRP36_NECH7 (rRNA biogenesis protein RRP36 OS=Nectria haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) GN=RRP36 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-31
Identity = 84/258 (32.56%), Postives = 141/258 (54.65%), Query Frame = 1 

Query: 105 EESEDLESSSSDDSLDSEEENIER----ELADVTFEELQRAR----SDGSHSMYQKT--- 164
           +E ED E S S++  + E E  E+    +L+ ++F  L +A+    S    S   KT   
Sbjct: 52  DEDEDEEGSDSEEGSEEEPEPEEQTPKVDLSSISFGALAKAQATLPSTSRRSKSSKTATE 111

Query: 165 ----------------KKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFES 224
                           K + K  R++K+ P E +S+KPVSR RE++   +   RDPRF+ 
Sbjct: 112 SSRTETTPAPRKSTRSKDDPKPKRSSKHAPQEQTSKKPVSRRREILPDNRRQYRDPRFDP 171

Query: 225 LSGNLDVDGFKKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDS 284
           L G +D +   K Y+F+ E     E  +L+ Q++KT D    E++K+QL  ++ + K+  
Sbjct: 172 LVGKVDEEKASKAYAFLDEYR-EKEMSDLRAQIKKTKDTYAKEDMKRQLQAMESRKKARK 231

Query: 285 TKRVDAAILAKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRR 336
            K  +  +L +H+KKE+E    GK PFYLK+SE +KQ LV++Y  + S G++D  +ER+R
Sbjct: 232 RKEEEENLLKEHRKKEKELVAQGKTPFYLKRSEQKKQILVKRYEGM-SKGQVDRAIERKR 291

[Close]
BLAST of Cla012480 vs. Swiss-Prot
Match: RRP36_BOTFB (rRNA biogenesis protein rrp36 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp36 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-31
Identity = 82/234 (35.04%), Postives = 135/234 (57.69%), Query Frame = 1 

Query: 104 EEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSHSMYQKTKKEKKGG--- 163
           EEE+ +  +S S  +L   +  + +  +    + L+++  DG        +K  K     
Sbjct: 66  EEEASNGAASISFGALAKAQATMSKP-SKRDSKNLKKSNGDGWEDNEATERKAGKKDQRD 125

Query: 164 --RANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGFKKRYSFIYENN 223
             R++KN P EVSS+K VSR REV+   K  +RDPRFE  +G +D+   +K Y F+ +  
Sbjct: 126 FTRSSKNAPTEVSSKKAVSRRREVVPVKKREIRDPRFEPTNGPVDMQKIEKNYDFLVDYR 185

Query: 224 LPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILAKHKKKEREAAK 283
              E ++LK+ +RKT D +  E+LK++L  ++ + K+D+ KR    +L KH+K+E+E  K
Sbjct: 186 -EDEMKKLKETIRKTKDEDEKEKLKRELLRMESRKKTDARKRKAREVLDKHRKEEKELVK 245

Query: 284 HGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRYIPYQR 333
            GK P+YLKK+E +K+ L++ +  LK   +LD  +ERRR+K   K+++ +P  R
Sbjct: 246 EGKTPYYLKKAEQKKRVLLDTFGELKGR-QLDRVIERRRKKVEGKEKKNMPRAR 296

[Close]
BLAST of Cla012480 vs. TrEMBL
Match: A0A0A0KUS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648700 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 8.8e-130
Identity = 238/253 (94.07%), Postives = 246/253 (97.23%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK+ SSVPSSGK+I+EEESEDLESSSSD+SLDSEEENIERELADVTFEELQRARSDGSH
Sbjct: 1   MKKYSSSVPSSGKQIVEEESEDLESSSSDESLDSEEENIERELADVTFEELQRARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
           SMYQKTK+EKK GRANKNRPMEVSSRKPVSRFREVIQAPKN+VRDPRFESLSG LD DGF
Sbjct: 61  SMYQKTKQEKKSGRANKNRPMEVSSRKPVSRFREVIQAPKNMVRDPRFESLSGTLDADGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           KKRYSFIYE  LPAEKEELKKQLRKTNDPNV EELKKQLSWIDKQFKSDSTKRVDAAILA
Sbjct: 121 KKRYSFIYEKTLPAEKEELKKQLRKTNDPNVAEELKKQLSWIDKQFKSDSTKRVDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYT+LKSTGKLDAYVER+RRKNAAKDRRY
Sbjct: 181 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTNLKSTGKLDAYVERKRRKNAAKDRRY 240

Query: 328 IPYQRSSKLDEQD 341
           IPYQRSSKLDEQD
Sbjct: 241 IPYQRSSKLDEQD 253

[Close]
BLAST of Cla012480 vs. TrEMBL
Match: A0A067FBL3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022953mg PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.0e-93
Identity = 169/251 (67.33%), Postives = 212/251 (84.46%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK  ++   S K   +EESE+   ++S  S + EEE IERELA++TFE+L +ARSDGSH
Sbjct: 1   MKKPNNATAGSSKTKFKEESEEDNKTTSVTSSE-EEEEIERELAEITFEDLLKARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
            +Y+K  +EKK GRANKNRPMEVS++KPVSRFREV+QAPK VVRDPRFESL GNLDV+GF
Sbjct: 61  LVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           +KRY F++EN LPAEKEELKKQL+KTNDPN V++LKK++SWIDKQ + +STK  DAAILA
Sbjct: 121 RKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           +HKKKEREAAKHGK+PFYLK SEIRKQRL+EKY  LK +GK+++++E+RRRKNAAKD +Y
Sbjct: 181 EHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 240

Query: 328 IPYQRSSKLDE 339
           +PY+R +  D+
Sbjct: 241 MPYRRPNNNDQ 250

[Close]
BLAST of Cla012480 vs. TrEMBL
Match: V4TK62_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021851mg PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.0e-93
Identity = 169/251 (67.33%), Postives = 212/251 (84.46%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK  ++   S K   +EESE+   ++S  S + EEE IERELA++TFE+L +ARSDGSH
Sbjct: 1   MKKPNNATAGSSKTKFKEESEEDNKTTSVTSSE-EEEEIERELAEITFEDLLKARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
            +Y+K  +EKK GRANKNRPMEVS++KPVSRFREV+QAPK VVRDPRFESL GNLDV+GF
Sbjct: 61  LVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           +KRY F++EN LPAEKEELKKQL+KTNDPN V++LKK++SWIDKQ + +STK  DAAILA
Sbjct: 121 RKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           +HKKKEREAAKHGK+PFYLK SEIRKQRL+EKY  LK +GK+++++E+RRRKNAAKD +Y
Sbjct: 181 EHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 240

Query: 328 IPYQRSSKLDE 339
           +PY+R +  D+
Sbjct: 241 MPYRRPNNNDQ 250

[Close]
BLAST of Cla012480 vs. TrEMBL
Match: A0A067JNE1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20662 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 162/253 (64.03%), Postives = 213/253 (84.19%), Query Frame = 1 

Query: 88  MKKHGSSV-PSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGS 147
           MKK   S+ PSS ++ +E E ED E  SS  S + +E  IERE+AD TFEELQ+ARS+GS
Sbjct: 1   MKKSNKSIAPSSSRRSVESE-EDAELLSSSSSSEEDESEIEREIADATFEELQKARSNGS 60

Query: 148 HSMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDG 207
            ++Y K K++KK GRANKNRP+E S +KPVSRFREV+QAPK V+RDPRFESLSGNLDV+G
Sbjct: 61  VTVYSKPKQDKKSGRANKNRPVEASCKKPVSRFREVVQAPKKVIRDPRFESLSGNLDVEG 120

Query: 208 FKKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAIL 267
           F+KRY+F++E+NLPAEKEELKKQL K+NDP V+++LK ++SWIDKQ K +S K+ DA+IL
Sbjct: 121 FRKRYNFLFEDNLPAEKEELKKQLNKSNDPRVIDQLKNRISWIDKQLKFESKKQTDASIL 180

Query: 268 AKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRR 327
           A+HKKKEREAAK GK+PFYLKKSEIR QRL++++  LK +GKL++++E++RRKNA+KD R
Sbjct: 181 AEHKKKEREAAKQGKQPFYLKKSEIRNQRLIKEFNKLKGSGKLESFIEKKRRKNASKDHR 240

Query: 328 YIPYQRSSKLDEQ 340
           ++PY+RSS  ++Q
Sbjct: 241 FMPYRRSSNSEQQ 252

[Close]
BLAST of Cla012480 vs. TrEMBL
Match: B9GKN6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08790g PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 7.6e-89
Identity = 163/252 (64.68%), Postives = 210/252 (83.33%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK  S+      K    ESE+L SS  D+S       IERELA+VTFE+LQ+A+S+GS 
Sbjct: 1   MKKKPSNEFGMSSKTHGVESEELSSSEEDES------EIERELAEVTFEDLQKAKSNGSL 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
           ++++K  +EKKGGRANKNRP EVS +KPVSRFREV+Q PK VVRDPRFESL GNLDV+GF
Sbjct: 61  TVFKKPDQEKKGGRANKNRPTEVSCKKPVSRFREVVQVPKKVVRDPRFESLCGNLDVEGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           +KRY F+++NNLPAEKEELKKQL+K+NDP V+++LK+++SWI+KQ K +STK+ DAAILA
Sbjct: 121 RKRYDFLFKNNLPAEKEELKKQLKKSNDPKVIDQLKERISWIEKQTKFESTKQTDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           +HKKKEREAAK GK+PFYLKKS+IRKQRL EKY  LK++GKL++++E+RR+KNAAKD RY
Sbjct: 181 EHKKKEREAAKQGKRPFYLKKSDIRKQRLTEKYNKLKASGKLESFIEKRRKKNAAKDHRY 240

Query: 328 IPYQRSSKLDEQ 340
           +PY+RS+  ++Q
Sbjct: 241 MPYRRSANSEQQ 246

[Close]
BLAST of Cla012480 vs. NCBI nr
Match: gi|659113574|ref|XP_008456647.1| (PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis melo])

HSP 1 Score: 477.2 bits (1227), Expect = 2.3e-131
Identity = 241/253 (95.26%), Postives = 249/253 (98.42%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK+ SSVPSSGK+IMEEESEDLESSSSD+SLDSEEENIERELADVTFEELQRARSDGSH
Sbjct: 1   MKKYSSSVPSSGKQIMEEESEDLESSSSDESLDSEEENIERELADVTFEELQRARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
           SMYQKTK+EKKGGRANKNRPMEVSSRKPVSRFREVIQAPK++VRDPRFESLSG LDVDGF
Sbjct: 61  SMYQKTKQEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKHMVRDPRFESLSGTLDVDGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           KKRYSFIYE NLPAEKEELKKQLRKTNDPNV EELKKQLSWIDKQFKSDSTKRVDAAILA
Sbjct: 121 KKRYSFIYEKNLPAEKEELKKQLRKTNDPNVAEELKKQLSWIDKQFKSDSTKRVDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYT+LKSTGKLDAYVER+RRKNAAKDRRY
Sbjct: 181 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTNLKSTGKLDAYVERKRRKNAAKDRRY 240

Query: 328 IPYQRSSKLDEQD 341
           IPYQRSSKLDEQD
Sbjct: 241 IPYQRSSKLDEQD 253

[Close]
BLAST of Cla012480 vs. NCBI nr
Match: gi|449447559|ref|XP_004141535.1| (PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis sativus])

HSP 1 Score: 471.5 bits (1212), Expect = 1.3e-129
Identity = 238/253 (94.07%), Postives = 246/253 (97.23%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK+ SSVPSSGK+I+EEESEDLESSSSD+SLDSEEENIERELADVTFEELQRARSDGSH
Sbjct: 1   MKKYSSSVPSSGKQIVEEESEDLESSSSDESLDSEEENIERELADVTFEELQRARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
           SMYQKTK+EKK GRANKNRPMEVSSRKPVSRFREVIQAPKN+VRDPRFESLSG LD DGF
Sbjct: 61  SMYQKTKQEKKSGRANKNRPMEVSSRKPVSRFREVIQAPKNMVRDPRFESLSGTLDADGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           KKRYSFIYE  LPAEKEELKKQLRKTNDPNV EELKKQLSWIDKQFKSDSTKRVDAAILA
Sbjct: 121 KKRYSFIYEKTLPAEKEELKKQLRKTNDPNVAEELKKQLSWIDKQFKSDSTKRVDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYT+LKSTGKLDAYVER+RRKNAAKDRRY
Sbjct: 181 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTNLKSTGKLDAYVERKRRKNAAKDRRY 240

Query: 328 IPYQRSSKLDEQD 341
           IPYQRSSKLDEQD
Sbjct: 241 IPYQRSSKLDEQD 253

[Close]
BLAST of Cla012480 vs. NCBI nr
Match: gi|568847136|ref|XP_006477395.1| (PREDICTED: rRNA biogenesis protein rrp36 isoform X1 [Citrus sinensis])

HSP 1 Score: 357.1 bits (915), Expect = 3.5e-95
Identity = 168/251 (66.93%), Postives = 213/251 (84.86%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK  ++   S K   EEESE+ E+ ++  +   EEE IERELA++TFE+L +ARSDGSH
Sbjct: 1   MKKPNNATAGSSKTKFEEESEEEENETTSVTSSEEEEEIERELAEITFEDLLKARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
            +Y+K  +EKK GRANKNRPMEVS++KPVSRFREV+QAPK VVRDPRFESL GNLDV+GF
Sbjct: 61  LVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           +KRY F++EN LPAE+EELKKQL+KTNDPN V++LKK++SWIDKQ + +STK  DAAIL+
Sbjct: 121 RKRYDFLFENTLPAEREELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILS 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           +HKKKEREAAKHGK+PFYLKKSEIRKQRL+EKY  LK +GK+++++E+RRRKNAAKD +Y
Sbjct: 181 EHKKKEREAAKHGKRPFYLKKSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 240

Query: 328 IPYQRSSKLDE 339
           +PY+R +  D+
Sbjct: 241 MPYRRPNNNDQ 251

[Close]
BLAST of Cla012480 vs. NCBI nr
Match: gi|567896106|ref|XP_006440541.1| (hypothetical protein CICLE_v10021851mg [Citrus clementina])

HSP 1 Score: 351.7 bits (901), Expect = 1.5e-93
Identity = 169/251 (67.33%), Postives = 212/251 (84.46%), Query Frame = 1 

Query: 88  MKKHGSSVPSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGSH 147
           MKK  ++   S K   +EESE+   ++S  S + EEE IERELA++TFE+L +ARSDGSH
Sbjct: 1   MKKPNNATAGSSKTKFKEESEEDNKTTSVTSSE-EEEEIERELAEITFEDLLKARSDGSH 60

Query: 148 SMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDGF 207
            +Y+K  +EKK GRANKNRPMEVS++KPVSRFREV+QAPK VVRDPRFESL GNLDV+GF
Sbjct: 61  LVYRKNSQEKKAGRANKNRPMEVSAKKPVSRFREVVQAPKRVVRDPRFESLCGNLDVEGF 120

Query: 208 KKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAILA 267
           +KRY F++EN LPAEKEELKKQL+KTNDPN V++LKK++SWIDKQ + +STK  DAAILA
Sbjct: 121 RKRYDFLFENTLPAEKEELKKQLKKTNDPNAVDKLKKRISWIDKQLRFESTKSTDAAILA 180

Query: 268 KHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRRY 327
           +HKKKEREAAKHGK+PFYLK SEIRKQRL+EKY  LK +GK+++++E+RRRKNAAKD +Y
Sbjct: 181 EHKKKEREAAKHGKRPFYLKNSEIRKQRLIEKYNKLKGSGKVESFIEKRRRKNAAKDHKY 240

Query: 328 IPYQRSSKLDE 339
           +PY+R +  D+
Sbjct: 241 MPYRRPNNNDQ 250

[Close]
BLAST of Cla012480 vs. NCBI nr
Match: gi|802741040|ref|XP_012087001.1| (PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas])

HSP 1 Score: 339.7 bits (870), Expect = 5.8e-90
Identity = 162/253 (64.03%), Postives = 213/253 (84.19%), Query Frame = 1 

Query: 88  MKKHGSSV-PSSGKKIMEEESEDLESSSSDDSLDSEEENIERELADVTFEELQRARSDGS 147
           MKK   S+ PSS ++ +E E ED E  SS  S + +E  IERE+AD TFEELQ+ARS+GS
Sbjct: 1   MKKSNKSIAPSSSRRSVESE-EDAELLSSSSSSEEDESEIEREIADATFEELQKARSNGS 60

Query: 148 HSMYQKTKKEKKGGRANKNRPMEVSSRKPVSRFREVIQAPKNVVRDPRFESLSGNLDVDG 207
            ++Y K K++KK GRANKNRP+E S +KPVSRFREV+QAPK V+RDPRFESLSGNLDV+G
Sbjct: 61  VTVYSKPKQDKKSGRANKNRPVEASCKKPVSRFREVVQAPKKVIRDPRFESLSGNLDVEG 120

Query: 208 FKKRYSFIYENNLPAEKEELKKQLRKTNDPNVVEELKKQLSWIDKQFKSDSTKRVDAAIL 267
           F+KRY+F++E+NLPAEKEELKKQL K+NDP V+++LK ++SWIDKQ K +S K+ DA+IL
Sbjct: 121 FRKRYNFLFEDNLPAEKEELKKQLNKSNDPRVIDQLKNRISWIDKQLKFESKKQTDASIL 180

Query: 268 AKHKKKEREAAKHGKKPFYLKKSEIRKQRLVEKYTSLKSTGKLDAYVERRRRKNAAKDRR 327
           A+HKKKEREAAK GK+PFYLKKSEIR QRL++++  LK +GKL++++E++RRKNA+KD R
Sbjct: 181 AEHKKKEREAAKQGKQPFYLKKSEIRNQRLIKEFNKLKGSGKLESFIEKKRRKNASKDHR 240

Query: 328 YIPYQRSSKLDEQ 340
           ++PY+RSS  ++Q
Sbjct: 241 FMPYRRSSNSEQQ 252

The following BLAST results are available for this feature:
BLAST of Cla012480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RRP36_NEMVE1.1e-3536.89Ribosomal RNA processing protein 36 homolog OS=Nematostella vectensis GN=v1g2459... [more]
RRP36_SCHJY1.1e-3232.55rRNA biogenesis protein rrp36 OS=Schizosaccharomyces japonicus (strain yFS275 / ... [more]
RRP36_SCLS11.6e-3134.07rRNA biogenesis protein rrp36 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1... [more]
RRP36_NECH72.1e-3132.56rRNA biogenesis protein RRP36 OS=Nectria haematococca (strain 77-13-4 / ATCC MYA... [more]
RRP36_BOTFB2.7e-3135.04rRNA biogenesis protein rrp36 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp36... [more]
BLAST of Cla012480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUS3_CUCSA8.8e-13094.07Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648700 PE=3 SV=1[more]
A0A067FBL3_CITSI1.0e-9367.33Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022953mg PE=3 SV=1[more]
V4TK62_9ROSI1.0e-9367.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021851mg PE=3 SV=1[more]
A0A067JNE1_JATCU4.0e-9064.03Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20662 PE=3 SV=1[more]
B9GKN6_POPTR7.6e-8964.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08790g PE=3 SV=1[more]
BLAST of Cla012480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113574|ref|XP_008456647.1|2.3e-13195.26PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis melo][more]
gi|449447559|ref|XP_004141535.1|1.3e-12994.07PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis sativus][more]
gi|568847136|ref|XP_006477395.1|3.5e-9566.93PREDICTED: rRNA biogenesis protein rrp36 isoform X1 [Citrus sinensis][more]
gi|567896106|ref|XP_006440541.1|1.5e-9367.33hypothetical protein CICLE_v10021851mg [Citrus clementina][more]
gi|802741040|ref|XP_012087001.1|5.8e-9064.03PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009292RRP36
Vocabulary: Biological Process
TermDefinition
GO:0000469cleavage involved in rRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000469 cleavage involved in rRNA processing
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0051604 protein maturation
biological_process GO:0008150 biological_process
biological_process GO:1900864 mitochondrial RNA modification
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
cellular_component GO:0030686 90S preribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU30395watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU49329watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012480Cla012480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU49329WMU49329transcribed_cluster
WMU30395WMU30395transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009292rRNA biogenesis protein RRP36PANTHERPTHR21738UNCHARACTERIZEDcoord: 103..336
score: 1.2
IPR009292rRNA biogenesis protein RRP36PFAMPF06102DUF947coord: 161..326
score: 4.0
NoneNo IPR availablePANTHERPTHR21738:SF0RIBOSOMAL RNA PROCESSING PROTEIN 36 HOMOLOGcoord: 103..336
score: 1.2