Cla011090 (gene) Watermelon (97103) v1

Overview
NameCla011090
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionE3 ubiquitin-protein ligase CG7694 (AHRD V1 *--- RN181_DROME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr3 : 25049328 .. 25050260 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTATTGGTGAAGACACCCATTGGTGCTATCAATGCAACCATTCATTCTGGCTTGATGGAGAAGACGTAGTTTGCCCTTATTGTAACGGTGGTTTCGTTGAAGAACTTAACGAAGAACATGATGAAACGGTTCAAAATGACTTTAATTCAGGCACAGAAGAAGATATTTCAACCCAGGTGCCTCCAATTTTTGAAGCCATGTTTGCATTGATGGGACGAAGAAGCCCTTATCCAAGATTTGGTCTTCTCGAAGCCGTTGATACTTTTACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTCGACGTTAGGAGGAGATCTGGTTCTGTCCCAGGGCAGAATTTGGATTTTTTCAATTCTTTTTGGTCATTCCATGAACACATGCCGGGTCCGACCTTCACTAGTGTCACTCCAGAAGGTAGATCTAGTCAGCGTACGGGACTGGAAGAATTAGCCGCACAGCTTTCCTTGAATGAACACAGGGAACCAGTTCCAACTCCTGCTTCTCACTCTTCTATACAAGCATTGCCCACAATCAAGATTAACCAAATGCACCTTGGCACCGACTCTCATTGTCCAGTCTGTAAAGAAAAATTTGAGCTGGGATCTGAAGCCAAAGTGTTGCCGTGTAATCATATTTATCACACTGATTGCATTCTTCCTTGGCTGGCCCAACATAATACTTGCCCGGTTTGTCGACTTGAGCTGCCTCTGCAGGACAGTGGACATGGTTGGGGAGGGAACAGTGGCAATAACGGTGAAGGCCTAAATGAGAGAGAGATTACTCATCGAAATCTGAGAAGGAGGCATCCATTCCCAGATTTTTTTGCTCCTCGTCGAATAGTCACTCGTTTCAGCAGCGGGATTCATATAAATGGCTTATCTACAGATCGAGAGCATGATAACGAGATGAGCTACCCTGAATGA

mRNA sequence

ATGTCATCTATTGGTGAAGACACCCATTGGTGCTATCAATGCAACCATTCATTCTGGCTTGATGGAGAAGACGTAGTTTGCCCTTATTGTAACGGTGGTTTCGTTGAAGAACTTAACGAAGAACATGATGAAACGGTTCAAAATGACTTTAATTCAGGCACAGAAGAAGATATTTCAACCCAGGTGCCTCCAATTTTTGAAGCCATGTTTGCATTGATGGGACGAAGAAGCCCTTATCCAAGATTTGGTCTTCTCGAAGCCGTTGATACTTTTACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTCGACGTTAGGAGGAGATCTGGTTCTGTCCCAGGGCAGAATTTGGATTTTTTCAATTCTTTTTGGTCATTCCATGAACACATGCCGGGTCCGACCTTCACTAGTGTCACTCCAGAAGGTAGATCTAGTCAGCGTACGGGACTGGAAGAATTAGCCGCACAGCTTTCCTTGAATGAACACAGGGAACCAGTTCCAACTCCTGCTTCTCACTCTTCTATACAAGCATTGCCCACAATCAAGATTAACCAAATGCACCTTGGCACCGACTCTCATTGTCCAGTCTGTAAAGAAAAATTTGAGCTGGGATCTGAAGCCAAAGTGTTGCCGTGTAATCATATTTATCACACTGATTGCATTCTTCCTTGGCTGGCCCAACATAATACTTGCCCGGTTTGTCGACTTGAGCTGCCTCTGCAGGACAGTGGACATGGTTGGGGAGGGAACAGTGGCAATAACGGTGAAGGCCTAAATGAGAGAGAGATTACTCATCGAAATCTGAGAAGGAGGCATCCATTCCCAGATTTTTTTGCTCCTCGTCGAATAGTCACTCGTTTCAGCAGCGGGATTCATATAAATGGCTTATCTACAGATCGAGAGCATGATAACGAGATGAGCTACCCTGAATGA

Coding sequence (CDS)

ATGTCATCTATTGGTGAAGACACCCATTGGTGCTATCAATGCAACCATTCATTCTGGCTTGATGGAGAAGACGTAGTTTGCCCTTATTGTAACGGTGGTTTCGTTGAAGAACTTAACGAAGAACATGATGAAACGGTTCAAAATGACTTTAATTCAGGCACAGAAGAAGATATTTCAACCCAGGTGCCTCCAATTTTTGAAGCCATGTTTGCATTGATGGGACGAAGAAGCCCTTATCCAAGATTTGGTCTTCTCGAAGCCGTTGATACTTTTACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTCGACGTTAGGAGGAGATCTGGTTCTGTCCCAGGGCAGAATTTGGATTTTTTCAATTCTTTTTGGTCATTCCATGAACACATGCCGGGTCCGACCTTCACTAGTGTCACTCCAGAAGGTAGATCTAGTCAGCGTACGGGACTGGAAGAATTAGCCGCACAGCTTTCCTTGAATGAACACAGGGAACCAGTTCCAACTCCTGCTTCTCACTCTTCTATACAAGCATTGCCCACAATCAAGATTAACCAAATGCACCTTGGCACCGACTCTCATTGTCCAGTCTGTAAAGAAAAATTTGAGCTGGGATCTGAAGCCAAAGTGTTGCCGTGTAATCATATTTATCACACTGATTGCATTCTTCCTTGGCTGGCCCAACATAATACTTGCCCGGTTTGTCGACTTGAGCTGCCTCTGCAGGACAGTGGACATGGTTGGGGAGGGAACAGTGGCAATAACGGTGAAGGCCTAAATGAGAGAGAGATTACTCATCGAAATCTGAGAAGGAGGCATCCATTCCCAGATTTTTTTGCTCCTCGTCGAATAGTCACTCGTTTCAGCAGCGGGATTCATATAAATGGCTTATCTACAGATCGAGAGCATGATAACGAGATGAGCTACCCTGAATGA

Protein sequence

MSSIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFFNSFWSFHEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDSGHGWGGNSGNNGEGLNEREITHRNLRRRHPFPDFFAPRRIVTRFSSGIHINGLSTDREHDNEMSYPE
Homology
[Close]
BLAST of Cla011090 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-41
Identity = 124/335 (37.01%), Postives = 158/335 (47.16%), Query Frame = 1 

Query: 3   SIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQV 62
           S   +THWC++C  +  L G++ VC YC GGFVEEL+                     Q 
Sbjct: 2   SSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-------------------MAQA 61

Query: 63  PPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRS------------- 122
            P F+   +  G       F L++A   F R R+A R+ + ++R R+             
Sbjct: 62  SP-FDMFRSHRGVVERDQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAP 121

Query: 123 -----GSVPGQNLDFFNSFWS-FHEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHR 182
                G VP   L   N+  + F+   PG   T     G      GLEEL  QLS    R
Sbjct: 122 LLIFGGQVP-YRLTGDNAVEALFNGGSPGIGITRGNT-GDYFFGPGLEELFEQLSAGTTR 181

Query: 183 EPVPTPASHSSIQALPTIKINQMHL-GTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCIL 242
              P PA  S+I ALPTIKI Q HL  +DS+CPVCK++FELGSEAK +PCNHIYH+DCI+
Sbjct: 182 RG-PPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIV 241

Query: 243 PWLAQHNTCPVCRLELPLQDSGHGWGGN---------SGNNGEGLNEREITHRNLRRRHP 302
           PWL QHN+CPVCR ELP   SG     N         S ++    N RE       RR+P
Sbjct: 242 PWLVQHNSCPVCRQELP-SASGPSSSQNRTTPTRNYRSSSSSSSSNSRE---NGNERRNP 301

Query: 303 FPDFFAPRRIVTRFSSGIHINGLSTDREHDNEMSY 309
           F  F+  R   +  SS  +  G       D   +Y
Sbjct: 302 FSSFWPFRSSGSSSSSTQNRGGTRNSDTSDENHNY 309

[Close]
BLAST of Cla011090 vs. Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.2e-31
Identity = 93/262 (35.50%), Postives = 130/262 (49.62%), Query Frame = 1 

Query: 8   THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGT--EEDISTQVPPI 67
           ++WCY C+   W+  + + CP C+GGF+E + E  D T  + F + T  +    T+ PP 
Sbjct: 5   SYWCYSCSRFVWVS-DSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRSPTRFPPP 64

Query: 68  FEAMF----ALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRR------SGSVPGQ 127
             +      ++    SP P         T      + R+PN  +  R      S  V  +
Sbjct: 65  SSSSSTPSASMHADNSPTP---------TIVTRTRSNRSPNPVIVLRGSAAAPSSDVVSE 124

Query: 128 NLDFFNSFWSFHEHMPG----PTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPT--- 187
            LD  ++F  +++        P   S+T     S    L +  +Q+ LN +R        
Sbjct: 125 GLDR-SAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRSCEHP 184

Query: 188 PASHSSIQALPTIKINQMHLGTD--SHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLA 247
           PAS S+I+ALP I+I+  HL +D  SHC VCKE F L S A+ +PCNHIYH DCILPWLA
Sbjct: 185 PASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLA 244

Query: 248 QHNTCPVCRLELPLQDSGHGWG 249
             N+CPVCR ELP +D   G G
Sbjct: 245 IRNSCPVCRHELPAEDLTDGTG 255

[Close]
BLAST of Cla011090 vs. Swiss-Prot
Match: R126A_XENLA (E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-28
Identity = 88/289 (30.45%), Postives = 125/289 (43.25%), Query Frame = 1 

Query: 9   HWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIFEA 68
           ++C+ C         +  CP C+ GF+EEL     ET +N  N+ +    + Q  P FE 
Sbjct: 11  YFCHSCTAEITPRLPEYTCPRCDSGFIEEL----PETSRNSENNSSNNSRTDQNRPSFEN 70

Query: 69  M---------------FALMGRRSPYPRFGLLEAVDTF----------TRERMAGRNP-- 128
           +               F +      +P FG    V+            +R+R   R P  
Sbjct: 71  LESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEETRDGESRREHQSRQRYGARQPRA 130

Query: 129 NFDVRRRSGSVPG---------QNLDFFNSFWSFHEHMPGP-TFTSVTPEGRSSQRTGLE 188
               RR +G   G         Q ++   +  +      GP       P   +    GL+
Sbjct: 131 RLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLD 190

Query: 189 ELAAQLSLNEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLP 248
            +  QL LN+     P PA +  IQALPTI+I + H+G+   CPVCKE + +G   + LP
Sbjct: 191 TIITQL-LNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLP 250

Query: 249 CNHIYHTDCILPWLAQHNTCPVCRLELPLQDSGHGWGGNSGNNGEGLNE 261
           CNH++H DCI+PWL QH+TCPVCR  L         G N+  N  GL+E
Sbjct: 251 CNHLFHNDCIIPWLEQHDTCPVCRKSLS--------GQNTATNPPGLSE 286

[Close]
BLAST of Cla011090 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-28
Identity = 85/271 (31.37%), Postives = 120/271 (44.28%), Query Frame = 1 

Query: 10  WCYQCNHSFWLD---GEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIF 69
           +CYQCN +  +      D  CP CN GF+EE  + +     N FN  + +       P  
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLN-FNPNSSDSFFPMADPFS 81

Query: 70  EAMFALMGRRSPYPR---FGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPG--QNLDFFN 129
             +  + G  +  P    F  L       + R   +NP  D       +    Q L    
Sbjct: 82  TLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTLRSSG 141

Query: 130 SFWSF--HEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPTPASHSSIQALP 189
           + + F    H   P        G      GLE+L  QL+ N+       PAS S+I ALP
Sbjct: 142 THFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALP 201

Query: 190 TIKINQMHLGTD-SHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCRLEL 249
           T+K+ +  L ++ + C VC ++FE GS+ K +PC H++H DC+LPWL  HN+CPVCR EL
Sbjct: 202 TVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 261

Query: 250 PLQD---SGHGWGGNSGNNGEGLNEREITHR 267
           P  D        G     +G+G  E + T R
Sbjct: 262 PTDDPDYENRSQGSQGSGDGQGSVEGQQTPR 291

[Close]
BLAST of Cla011090 vs. Swiss-Prot
Match: R126B_XENLA (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-28
Identity = 87/285 (30.53%), Postives = 121/285 (42.46%), Query Frame = 1 

Query: 9   HWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFN-SGTE---------EDI 68
           ++C+ C         +  CP C+ GF+EEL E    +  N  N SGT+         E  
Sbjct: 11  YFCHSCTAEITPRLPEYTCPRCDSGFIEELPETSRNSESNSSNNSGTDQNRPSFENIESA 70

Query: 69  STQVPPIF-EAMFALMGRRSPYPRFGLLEAVDTF----------TRERMAGRNPNFDVRR 128
              +P  + +  F +      +P FG    V+            +R+R   R P   +  
Sbjct: 71  QFTLPSGYGQVTFGIFNEGLDFPMFGTSGPVEETRDGESRREHQSRQRYGARQPRARMST 130

Query: 129 RSGSVPGQNLDFFNSF-WSFHEHMPGPTFTS---VTPEGRSSQR--------TGLEELAA 188
           R G+   + +             +  PT  S   V P G              GL+ +  
Sbjct: 131 RRGAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDTIIT 190

Query: 189 QLSLNEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHI 248
           QL LN+     P PA    IQALPTI+I + H+G    CPVCKE + +G   + LPCNH+
Sbjct: 191 QL-LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHL 250

Query: 249 YHTDCILPWLAQHNTCPVCRLELPLQDSGHGWGGNSGNNGEGLNE 261
           +H DCI+PWL QH+TCPVCR  L         G N+  N  GL +
Sbjct: 251 FHNDCIIPWLEQHDTCPVCRKSLS--------GQNTATNPPGLTD 286

[Close]
BLAST of Cla011090 vs. TrEMBL
Match: A0A0A0LZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 2.8e-167
Identity = 273/310 (88.06%), Postives = 287/310 (92.58%), Query Frame = 1 

Query: 1   MSSIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDIST 60
           MSS GEDTHWC+QC+HSFWLDGED+VCP+C GGFVEELN+EHDETVQNDFN G EED+ST
Sbjct: 59  MSSFGEDTHWCHQCHHSFWLDGEDIVCPHCYGGFVEELNDEHDETVQNDFNPGIEEDLST 118

Query: 61  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 120
           QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF
Sbjct: 119 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 178

Query: 121 NSFWSFHEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPTPASHSSIQALPT 180
           NSFWSFH+HM G TF +VTPEGRSSQ TGLEELAAQLSLNE REPVPTPASHS I+A+PT
Sbjct: 179 NSFWSFHDHMSGSTFANVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPT 238

Query: 181 IKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCRLELPL 240
           IKINQMHLGTDSHCPVCKEKFEL SEAK LPCNHIYH DCILPWL QHNTCPVCRLELP 
Sbjct: 239 IKINQMHLGTDSHCPVCKEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQ 298

Query: 241 QDSGHGWGGNSGNNGEGLNEREITHRNLRRRHPFPDFFAPRRIVTRFSSGIHINGLSTDR 300
           Q+SGH WGG+  NN E LNEREIT RNLRRRHP PDFFAPRRIVTRFSSGIHINGLS+DR
Sbjct: 299 QESGHSWGGSGDNNSEDLNEREITQRNLRRRHPIPDFFAPRRIVTRFSSGIHINGLSSDR 358

Query: 301 EHDNEMSYPE 311
           +HDNEM YPE
Sbjct: 359 DHDNEMGYPE 368

[Close]
BLAST of Cla011090 vs. TrEMBL
Match: A0A0B2R254_GLYSO (E3 ubiquitin-protein ligase RING1-like OS=Glycine soja GN=glysoja_038229 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.2e-71
Identity = 145/290 (50.00%), Postives = 186/290 (64.14%), Query Frame = 1 

Query: 8   THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIFE 67
           THWCY C     LDG D VCPYC+GGFV+EL+E       ++    ++     Q+P IF+
Sbjct: 6   THWCYACRQPIVLDGRDPVCPYCDGGFVQELDELRGIAPNHNHTFSSQSGDFHQMPDIFD 65

Query: 68  AMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGS--VPGQNLDFFNS--F 127
           A+ A MG+R    RFGL++AVD F R RMAGRN NFDVR RSGS  VP Q+   ++S  +
Sbjct: 66  AIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSLPVPEQSWGVYSSGPY 125

Query: 128 WSFHEHMPGPTFTSVTPEGRSSQ--------RTGLEELAAQLSLNEHREPVPTPASHSSI 187
             FH  +PG T ++ +P G   +          GLEEL  QL++N+ R P P  A+ SSI
Sbjct: 126 LIFHGQVPGFTLSAGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDQRGPAP--AARSSI 185

Query: 188 QALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCR 247
            A+PTIKI Q HL +DSHCPVCKEKFELG+EA+ +PCNHIYH+DCI+PWL QHN+CPVCR
Sbjct: 186 DAMPTIKITQAHLRSDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCR 245

Query: 248 LELPLQDSG-----HGWGGNSGNN--GEGLNE----REITHRNLRRRHPF 275
           +ELP Q          WGG + +N    G N+    RE +H+N  RR+PF
Sbjct: 246 VELPPQGQASSRGTRSWGGRNASNSSSSGSNDSSRGRENSHQNHGRRNPF 293

[Close]
BLAST of Cla011090 vs. TrEMBL
Match: I1M784_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G039000 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.2e-71
Identity = 145/290 (50.00%), Postives = 186/290 (64.14%), Query Frame = 1 

Query: 8   THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIFE 67
           THWCY C     LDG D VCPYC+GGFV+EL+E       ++    ++     Q+P IF+
Sbjct: 6   THWCYACRQPIVLDGRDPVCPYCDGGFVQELDELRGIAPNHNHTFSSQSGDFHQMPDIFD 65

Query: 68  AMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGS--VPGQNLDFFNS--F 127
           A+ A MG+R    RFGL++AVD F R RMAGRN NFDVR RSGS  VP Q+   ++S  +
Sbjct: 66  AIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSLPVPEQSWGVYSSGPY 125

Query: 128 WSFHEHMPGPTFTSVTPEGRSSQ--------RTGLEELAAQLSLNEHREPVPTPASHSSI 187
             FH  +PG T ++ +P G   +          GLEEL  QL++N+ R P P  A+ SSI
Sbjct: 126 LIFHGQVPGFTLSAGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDQRGPAP--AARSSI 185

Query: 188 QALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCR 247
            A+PTIKI Q HL +DSHCPVCKEKFELG+EA+ +PCNHIYH+DCI+PWL QHN+CPVCR
Sbjct: 186 DAMPTIKITQAHLRSDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCR 245

Query: 248 LELPLQDSG-----HGWGGNSGNN--GEGLNE----REITHRNLRRRHPF 275
           +ELP Q          WGG + +N    G N+    RE +H+N  RR+PF
Sbjct: 246 VELPPQGQASSRGTRSWGGRNASNSSSSGSNDSSRGRENSHQNHGRRNPF 293

[Close]
BLAST of Cla011090 vs. TrEMBL
Match: W9QUU8_9ROSA (E3 ubiquitin-protein ligase RING1-like protein OS=Morus notabilis GN=L484_022532 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.2e-71
Identity = 162/330 (49.09%), Postives = 199/330 (60.30%), Query Frame = 1 

Query: 3   SIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEEL--NEEHDETVQNDFNSGTEEDIST 62
           S G DTHWCYQC+ +F + G DVVCPYC+GGFVEE+   E H  + +++F S +E  +S 
Sbjct: 2   SSGGDTHWCYQCSRTFRIRGGDVVCPYCDGGFVEEICETEMHGLSRRDEFISDSE--VSH 61

Query: 63  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 122
           Q+P IF+ MFALMGR  P  RF     +DT  R RMAGRNPNFDVR RSG      +   
Sbjct: 62  QMPDIFDLMFALMGRSGPDQRF-----IDTI-RHRMAGRNPNFDVRARSGPEHNWGVSGS 121

Query: 123 NSFWSFHEHMPGPTFTSVTPEGRSSQRT---------GLEELAAQLSLNEHREPVPTPAS 182
                F    PG  F+  +P G   +R          GLEEL  QL++N+ R P   PAS
Sbjct: 122 APLLIFQGQFPGLAFSHGSP-GHGRRRADFGDYFVGPGLEELIGQLTMNDRRGP--PPAS 181

Query: 183 HSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTC 242
            SSI+A+PTIKI Q HL TD HCPVCKEKFELGSEA+ +PCNHIYH+DCI+PWL QHN+C
Sbjct: 182 RSSIEAMPTIKITQAHLRTDLHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSC 241

Query: 243 PVCRLELP-----LQDSGHGW--GGNSGNNGEGLN---EREITHRNLRRRHPFPDFFAPR 302
           PVCR+ELP            W  G +SG++  G++    RE   +N  RR+P   F  P 
Sbjct: 242 PVCRVELPPLGTSTSRGSRSWVGGSSSGSSSSGIDGSTSRETGRQNYGRRNPL-SFLWPF 301

Query: 303 RIV---TRFSSGIHINGLSTDREHDNEMSY 309
           R     TR  S    N  ST RE +NEM Y
Sbjct: 302 RSSNPNTRRDSETGGNSSSTTRERNNEMGY 319

[Close]
BLAST of Cla011090 vs. TrEMBL
Match: G7KCR8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g088720 PE=4 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 7.2e-70
Identity = 144/282 (51.06%), Postives = 179/282 (63.48%), Query Frame = 1 

Query: 8   THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIFE 67
           THWCY+CN    L+G DVVCPYC+ GFV+ELNE      QN F S + E    Q+P +F+
Sbjct: 11  THWCYECNRPIVLEGRDVVCPYCDEGFVQELNEMRGTAPQNTFPSRSGE--FNQMPDLFD 70

Query: 68  AMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVP----GQNLDFFNSF 127
           A+ A +G R    RFGL++AVD F R RMAG +PNFDVR RS SVP    G  +     F
Sbjct: 71  AIHAFVGHRGSDNRFGLMDAVDNFMRHRMAGMHPNFDVRGRSSSVPVPEQGWGVYSSGPF 130

Query: 128 WSFHEHMPGPTFTSVTPEGRSSQR--------TGLEELAAQLSLNEHREPVPTPASHSSI 187
             FH  +PG T  + +P G   +         +GLEEL  QL++N+ R P   PA+ SSI
Sbjct: 131 LVFHGQVPGLTLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGP--PPAARSSI 190

Query: 188 QALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCR 247
            A+PTI+I Q HL +DSHCPVCKEKFELGSEA+ +PC+HIYH++CI+PWL QHN+CPVCR
Sbjct: 191 DAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHNSCPVCR 250

Query: 248 LELPLQDSGHGWG---GNSGNNGEGLNEREITHRNLRRRHPF 275
           +ELP Q      G    NSG NG     RE    N  RR+PF
Sbjct: 251 VELPPQGQMSSRGSSRSNSGGNGSS-RGRESDRPNNGRRNPF 287

[Close]
BLAST of Cla011090 vs. NCBI nr
Match: gi|659100327|ref|XP_008451039.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 603.6 bits (1555), Expect = 1.9e-169
Identity = 274/310 (88.39%), Postives = 291/310 (93.87%), Query Frame = 1 

Query: 1   MSSIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDIST 60
           MSS+GEDTHWCYQCNHSFWLDGEDVVCP+CNGGFVEELN++HDET+QNDFN G EED+ST
Sbjct: 1   MSSVGEDTHWCYQCNHSFWLDGEDVVCPHCNGGFVEELNDDHDETIQNDFNPGIEEDLST 60

Query: 61  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 120
           QVPPIFEAMFALMGRR+PYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF
Sbjct: 61  QVPPIFEAMFALMGRRNPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 120

Query: 121 NSFWSFHEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPTPASHSSIQALPT 180
           NSFWSFH+HM G TF +VTPEGRSSQ TGLEELAAQLSLNE REPVPTPASHS I+A+PT
Sbjct: 121 NSFWSFHDHMSGSTFGNVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPT 180

Query: 181 IKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCRLELPL 240
           IKINQMHLG+DSHCPVCKEKFEL SEAK LPCNHIYHTDCILPWL QHNTCPVCRLELP 
Sbjct: 181 IKINQMHLGSDSHCPVCKEKFELESEAKALPCNHIYHTDCILPWLVQHNTCPVCRLELPQ 240

Query: 241 QDSGHGWGGNSGNNGEGLNEREITHRNLRRRHPFPDFFAPRRIVTRFSSGIHINGLSTDR 300
           Q+SGH WGGN G+N E LNERE+T RNLRRRHPFPDFFAPRRIVTRF SGIHINGLS+DR
Sbjct: 241 QESGHSWGGNGGSNSEDLNEREMTQRNLRRRHPFPDFFAPRRIVTRFGSGIHINGLSSDR 300

Query: 301 EHDNEMSYPE 311
           +HDNEM YPE
Sbjct: 301 DHDNEMGYPE 310

[Close]
BLAST of Cla011090 vs. NCBI nr
Match: gi|449452702|ref|XP_004144098.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus])

HSP 1 Score: 595.9 bits (1535), Expect = 4.1e-167
Identity = 273/310 (88.06%), Postives = 287/310 (92.58%), Query Frame = 1 

Query: 1   MSSIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDIST 60
           MSS GEDTHWC+QC+HSFWLDGED+VCP+C GGFVEELN+EHDETVQNDFN G EED+ST
Sbjct: 1   MSSFGEDTHWCHQCHHSFWLDGEDIVCPHCYGGFVEELNDEHDETVQNDFNPGIEEDLST 60

Query: 61  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 120
           QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF
Sbjct: 61  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 120

Query: 121 NSFWSFHEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPTPASHSSIQALPT 180
           NSFWSFH+HM G TF +VTPEGRSSQ TGLEELAAQLSLNE REPVPTPASHS I+A+PT
Sbjct: 121 NSFWSFHDHMSGSTFANVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPT 180

Query: 181 IKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCRLELPL 240
           IKINQMHLGTDSHCPVCKEKFEL SEAK LPCNHIYH DCILPWL QHNTCPVCRLELP 
Sbjct: 181 IKINQMHLGTDSHCPVCKEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQ 240

Query: 241 QDSGHGWGGNSGNNGEGLNEREITHRNLRRRHPFPDFFAPRRIVTRFSSGIHINGLSTDR 300
           Q+SGH WGG+  NN E LNEREIT RNLRRRHP PDFFAPRRIVTRFSSGIHINGLS+DR
Sbjct: 241 QESGHSWGGSGDNNSEDLNEREITQRNLRRRHPIPDFFAPRRIVTRFSSGIHINGLSSDR 300

Query: 301 EHDNEMSYPE 311
           +HDNEM YPE
Sbjct: 301 DHDNEMGYPE 310

[Close]
BLAST of Cla011090 vs. NCBI nr
Match: gi|700211291|gb|KGN66387.1| (hypothetical protein Csa_1G600760 [Cucumis sativus])

HSP 1 Score: 595.9 bits (1535), Expect = 4.1e-167
Identity = 273/310 (88.06%), Postives = 287/310 (92.58%), Query Frame = 1 

Query: 1   MSSIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDIST 60
           MSS GEDTHWC+QC+HSFWLDGED+VCP+C GGFVEELN+EHDETVQNDFN G EED+ST
Sbjct: 59  MSSFGEDTHWCHQCHHSFWLDGEDIVCPHCYGGFVEELNDEHDETVQNDFNPGIEEDLST 118

Query: 61  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 120
           QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF
Sbjct: 119 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 178

Query: 121 NSFWSFHEHMPGPTFTSVTPEGRSSQRTGLEELAAQLSLNEHREPVPTPASHSSIQALPT 180
           NSFWSFH+HM G TF +VTPEGRSSQ TGLEELAAQLSLNE REPVPTPASHS I+A+PT
Sbjct: 179 NSFWSFHDHMSGSTFANVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPT 238

Query: 181 IKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVCRLELPL 240
           IKINQMHLGTDSHCPVCKEKFEL SEAK LPCNHIYH DCILPWL QHNTCPVCRLELP 
Sbjct: 239 IKINQMHLGTDSHCPVCKEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQ 298

Query: 241 QDSGHGWGGNSGNNGEGLNEREITHRNLRRRHPFPDFFAPRRIVTRFSSGIHINGLSTDR 300
           Q+SGH WGG+  NN E LNEREIT RNLRRRHP PDFFAPRRIVTRFSSGIHINGLS+DR
Sbjct: 299 QESGHSWGGSGDNNSEDLNEREITQRNLRRRHPIPDFFAPRRIVTRFSSGIHINGLSSDR 358

Query: 301 EHDNEMSYPE 311
           +HDNEM YPE
Sbjct: 359 DHDNEMGYPE 368

[Close]
BLAST of Cla011090 vs. NCBI nr
Match: gi|1012202077|ref|XP_015973474.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis])

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 148/288 (51.39%), Postives = 179/288 (62.15%), Query Frame = 1 

Query: 8   THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFNSGTEEDISTQVPPIFE 67
           THWCY+C     L G DVVCPYC+GGFV+ELNE      Q+ F S    +   Q+P  F+
Sbjct: 6   THWCYECRQPIVLGGRDVVCPYCDGGFVQELNELQGFAPQHAFPSSQMGEFH-QMPDFFD 65

Query: 68  AMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDF----FNSF 127
           A+ A MGRR P PRFG ++AVD F R+RMAGR+PNFDVR RSG  PG    +       +
Sbjct: 66  ALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPGPEQSWGVVSSGPY 125

Query: 128 WSFHEHMPGPTFTSV-TPEGRSS--------QRTGLEELAAQLSLNEHREPVPTPASHSS 187
             FH  +PG T  +  +P G              GLEEL  QL++NE R P   PA+ SS
Sbjct: 126 LIFHGQVPGFTLANGGSPRGGPRGVDFGDYFMGPGLEELIEQLTMNERRGP--PPAARSS 185

Query: 188 IQALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTCPVC 247
           I A+PTIKI   HL  DSHCPVCKEKFELGSEA+ +PCNHIYHTDCI+PWL QHN+CPVC
Sbjct: 186 IDAMPTIKITSAHLRQDSHCPVCKEKFELGSEAREMPCNHIYHTDCIVPWLVQHNSCPVC 245

Query: 248 RLELPLQD--------SGHGWGGN-SGNNGEGLNEREITHRNLRRRHP 274
           R+ELP Q         SG G   N SG++      RE +H++  RRHP
Sbjct: 246 RVELPPQGHVSSRGSRSGGGRNANSSGDSDSSSRSRESSHQSQGRRHP 290

[Close]
BLAST of Cla011090 vs. NCBI nr
Match: gi|703089500|ref|XP_010093819.1| (E3 ubiquitin-protein ligase RING1-like protein [Morus notabilis])

HSP 1 Score: 277.3 bits (708), Expect = 3.2e-71
Identity = 162/330 (49.09%), Postives = 199/330 (60.30%), Query Frame = 1 

Query: 3   SIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEEL--NEEHDETVQNDFNSGTEEDIST 62
           S G DTHWCYQC+ +F + G DVVCPYC+GGFVEE+   E H  + +++F S +E  +S 
Sbjct: 2   SSGGDTHWCYQCSRTFRIRGGDVVCPYCDGGFVEEICETEMHGLSRRDEFISDSE--VSH 61

Query: 63  QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVPGQNLDFF 122
           Q+P IF+ MFALMGR  P  RF     +DT  R RMAGRNPNFDVR RSG      +   
Sbjct: 62  QMPDIFDLMFALMGRSGPDQRF-----IDTI-RHRMAGRNPNFDVRARSGPEHNWGVSGS 121

Query: 123 NSFWSFHEHMPGPTFTSVTPEGRSSQRT---------GLEELAAQLSLNEHREPVPTPAS 182
                F    PG  F+  +P G   +R          GLEEL  QL++N+ R P   PAS
Sbjct: 122 APLLIFQGQFPGLAFSHGSP-GHGRRRADFGDYFVGPGLEELIGQLTMNDRRGP--PPAS 181

Query: 183 HSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAKVLPCNHIYHTDCILPWLAQHNTC 242
            SSI+A+PTIKI Q HL TD HCPVCKEKFELGSEA+ +PCNHIYH+DCI+PWL QHN+C
Sbjct: 182 RSSIEAMPTIKITQAHLRTDLHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSC 241

Query: 243 PVCRLELP-----LQDSGHGW--GGNSGNNGEGLN---EREITHRNLRRRHPFPDFFAPR 302
           PVCR+ELP            W  G +SG++  G++    RE   +N  RR+P   F  P 
Sbjct: 242 PVCRVELPPLGTSTSRGSRSWVGGSSSGSSSSGIDGSTSRETGRQNYGRRNPL-SFLWPF 301

Query: 303 RIV---TRFSSGIHINGLSTDREHDNEMSY 309
           R     TR  S    N  ST RE +NEM Y
Sbjct: 302 RSSNPNTRRDSETGGNSSSTTRERNNEMGY 319

The following BLAST results are available for this feature:
BLAST of Cla011090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH4.5e-4137.01Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RHC2A_ARATH7.2e-3135.50Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2... [more]
R126A_XENLA3.3e-2830.45E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1[more]
RNG1L_ARATH3.3e-2831.37E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
R126B_XENLA3.3e-2830.53E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1[more]
BLAST of Cla011090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZS8_CUCSA2.8e-16788.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1[more]
A0A0B2R254_GLYSO2.2e-7150.00E3 ubiquitin-protein ligase RING1-like OS=Glycine soja GN=glysoja_038229 PE=4 SV... [more]
I1M784_SOYBN2.2e-7150.00Uncharacterized protein OS=Glycine max GN=GLYMA_14G039000 PE=4 SV=1[more]
W9QUU8_9ROSA2.2e-7149.09E3 ubiquitin-protein ligase RING1-like protein OS=Morus notabilis GN=L484_022532... [more]
G7KCR8_MEDTR7.2e-7051.06Uncharacterized protein OS=Medicago truncatula GN=MTR_5g088720 PE=4 SV=2[more]
BLAST of Cla011090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100327|ref|XP_008451039.1|1.9e-16988.39PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|449452702|ref|XP_004144098.1|4.1e-16788.06PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus][more]
gi|700211291|gb|KGN66387.1|4.1e-16788.06hypothetical protein Csa_1G600760 [Cucumis sativus][more]
gi|1012202077|ref|XP_015973474.1|1.1e-7151.39PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis][more]
gi|703089500|ref|XP_010093819.1|3.2e-7149.09E3 ubiquitin-protein ligase RING1-like protein [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044267 cellular protein metabolic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0005618 cell wall
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU30262watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU56105watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011090Cla011090.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU56105WMU56105transcribed_cluster
WMU30262WMU30262transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 193..235
score: 1.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 194..234
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 194..235
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 191..238
score: 4.1
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 6..274
score: 4.3
NoneNo IPR availablePANTHERPTHR22763:SF44E3 UBIQUITIN LIGASEcoord: 6..274
score: 4.3
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 8..38
score: 2.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 174..242
score: 2.87