WMU56105 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU56105
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr3 : 25049429 .. 25049866 (+)
Sequence length437
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AAAAATCTGGGAATGGATGCCTCCTTCTCAGATTTCGATGAGTAATCTCTCTCTCATTTAGGCCTTCACCGTTATTGCCACTGTTCCCTCCCCAACCATGTCCACTGTCCTGCAGAGGCAGCTCAAGTCGACAAACCGGGCAAGTATTATGTTGGGCCAGCCAAGGAAGAATGCAATCAGTGTGATAAATATGATTACACGGCAACATTTTGGCTTCAGATCCCAGCTCAAATTTTTCTTTACAGACTGGACAATGAGAGTCGGTGCCAAGGTGCATTTGGTTAATCTTGATTGTGGGCAATGCTTGTATAGAAGAGTGAGAAGCAGGAGTTGGAACTGGTTCCCTGTGTTCATCCAAGGAAAGCTGTGCGGCTAATTCTTCCAGTCCCGTACGCTGACTAGATCTACCTTCTGGAGTGACACTAGTGAAGGTCGGA
Homology
[Close]
BLAST of WMU56105 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-32
Identity = 64/96 (66.67%), Postives = 71/96 (73.96%), Query Frame = -2 

Query: 104 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHL-GTDSHCPVCKEKFELGSEA 163
           GLEEL  QLS   H    P PA  SSI ALPTIKI Q HL  +DSHCPVCK++FEL SEA
Sbjct: 141 GLEELIEQLSSGTHHRG-PPPAPKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEA 200

Query: 164 KMLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDS 223
           K +PC+HIYH+DCI+PWL QHN+CPVCR ELP + S
Sbjct: 201 KQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGS 235

Query: 224  283
           
Sbjct: 261  235

Query: 284  343
           
Sbjct: 321  235

Query: 344  389
           
Sbjct: 381  235

[Close]
BLAST of WMU56105 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 131.7 bits (330), Expect = 3.6e-31
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = -2 

Query: 116 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHL-GTDSHCPVCKEKFELGSEA 175
           GLEEL  QLS    R   P PA  S+I ALPTIKI Q HL  +DS+CPVCK++FELGSEA
Sbjct: 145 GLEELFEQLSAGTTRRG-PPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEA 204

Query: 176 KMLPCNHIYHTDCILPWLAQHNTCPVCRLELP 235
           K +PCNHIYH+DCI+PWL QHN+CPVCR ELP
Sbjct: 205 KQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

Query: 236  295
           
Sbjct: 265  235

Query: 296  355
           
Sbjct: 325  235

Query: 356  389
           
Sbjct: 385  235

[Close]
BLAST of WMU56105 vs. TAIR10
Match: AT3G10815.1 (AT3G10815.1 RING/U-box superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-26
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = -2 

Query: 116 EGRSSQRTGLEELAAQLSLDE--HREPV------PTPASHSSIQALPTIKINQMHLGTDS 175
           E R+ +      +  QLS +E  +R P       P PAS ++I +L  IKI Q HLG D 
Sbjct: 60  EARNRRNNRRSVIGEQLSFEELFNRLPALQDRRGPPPASLAAINSLQKIKIRQKHLGLDP 119

Query: 176 HCPVCKEKFELGSEAKMLPCNHIYHTDCILPWLAQHNTCPVCRLELP 235
           +CPVC+++FE+GS+A+ +PC HIYH++CILPWL Q NTCPVCR ELP
Sbjct: 120 YCPVCQDQFEIGSDARKMPCKHIYHSECILPWLVQRNTCPVCRKELP 166

Query: 236  295
           
Sbjct: 180  166

Query: 296  355
           
Sbjct: 240  166

Query: 356  413
           
Sbjct: 300  166

[Close]
BLAST of WMU56105 vs. TAIR10
Match: AT2G39720.1 (AT2G39720.1 RING-H2 finger C2A)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-23
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = -2 

Query: 107 PASHSSIQALPTIKINQMHLGTD--SHCPVCKEKFELGSEAKMLPCNHIYHTDCILPWLA 166
           PAS S+I+ALP I+I+  HL +D  SHC VCKE F L S A+ +PCNHIYH DCILPWLA
Sbjct: 174 PASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLA 233

Query: 167 QHNTCPVCRLELPLQD 226
             N+CPVCR ELP +D
Sbjct: 234 IRNSCPVCRHELPAED 249

Query: 227  286
           
Sbjct: 294  249

Query: 287  329
           
Sbjct: 354  249

[Close]
BLAST of WMU56105 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-23
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = -2 

Query: 107 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTD-SHCPVCKEKFELGSEA 166
           GLE+L  QL+ ++       PAS S+I ALPT+K+ +  L ++ + C VC ++FE GS+ 
Sbjct: 170 GLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDV 229

Query: 167 KMLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQD 226
           K +PC H++H DC+LPWL  HN+CPVCR ELP  D
Sbjct: 230 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDD 264

Query: 227  286
           
Sbjct: 290  264

Query: 287  346
           
Sbjct: 350  264

Query: 347  389
           
Sbjct: 410  264

[Close]
BLAST of WMU56105 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.4e-30
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = -2 

Query: 116 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHL-GTDSHCPVCKEKFELGSEA 175
           GLEEL  QLS    R   P PA  S+I ALPTIKI Q HL  +DS+CPVCK++FELGSEA
Sbjct: 145 GLEELFEQLSAGTTRRG-PPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEA 204

Query: 176 KMLPCNHIYHTDCILPWLAQHNTCPVCRLELP 235
           K +PCNHIYH+DCI+PWL QHN+CPVCR ELP
Sbjct: 205 KQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235

Query: 236  295
           
Sbjct: 265  235

Query: 296  355
           
Sbjct: 325  235

Query: 356  389
           
Sbjct: 385  235

[Close]
BLAST of WMU56105 vs. Swiss-Prot
Match: RN126_XENTR (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-23
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = -2 

Query: 104 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAK 163
           GL+ +  QL L++     P PA    IQALPTI+I + H+G+   CPVCKE + +G   +
Sbjct: 183 GLDTIITQL-LNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVR 242

Query: 164 MLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDS 223
            LPCNH++H DCI+PWL QH+TCPVCR  L  Q++
Sbjct: 243 QLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNT 276

Query: 224  283
           
Sbjct: 303  276

Query: 284  343
           
Sbjct: 363  276

Query: 344  389
           
Sbjct: 423  276

[Close]
BLAST of WMU56105 vs. Swiss-Prot
Match: R126A_XENLA (E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-23
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = -2 

Query: 104 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAK 163
           GL+ +  QL L++     P PA +  IQALPTI+I + H+G+   CPVCKE + +G   +
Sbjct: 184 GLDTIITQL-LNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVR 243

Query: 164 MLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDS 223
            LPCNH++H DCI+PWL QH+TCPVCR  L  Q++
Sbjct: 244 QLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNT 277

Query: 224  283
           
Sbjct: 304  277

Query: 284  343
           
Sbjct: 364  277

Query: 344  389
           
Sbjct: 424  277

[Close]
BLAST of WMU56105 vs. Swiss-Prot
Match: R126B_XENLA (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-23
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = -2 

Query: 104 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAK 163
           GL+ +  QL L++     P PA    IQALPTI+I + H+G    CPVCKE + +G   +
Sbjct: 184 GLDTIITQL-LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVR 243

Query: 164 MLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDS 223
            LPCNH++H DCI+PWL QH+TCPVCR  L  Q++
Sbjct: 244 QLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNT 277

Query: 224  283
           
Sbjct: 304  277

Query: 284  343
           
Sbjct: 364  277

Query: 344  389
           
Sbjct: 424  277

[Close]
BLAST of WMU56105 vs. Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-22
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = -2 

Query: 107 PASHSSIQALPTIKINQMHLGTD--SHCPVCKEKFELGSEAKMLPCNHIYHTDCILPWLA 166
           PAS S+I+ALP I+I+  HL +D  SHC VCKE F L S A+ +PCNHIYH DCILPWLA
Sbjct: 174 PASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLA 233

Query: 167 QHNTCPVCRLELPLQD 226
             N+CPVCR ELP +D
Sbjct: 234 IRNSCPVCRHELPAED 249

Query: 227  286
           
Sbjct: 294  249

Query: 287  329
           
Sbjct: 354  249

[Close]
BLAST of WMU56105 vs. NCBI nr
Match: gi|659100327|ref|XP_008451039.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 2.2e-59
Identity = 112/144 (77.78%), Postives = 119/144 (82.64%), Query Frame = -2 

Query: 2   TFTSVTPEGRSSQRTGLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSH 61
           TF +VTPEGRSSQ TGLEELAAQLSL+E REPVPTPASHS I+A+PTIKINQMHLG+DSH
Sbjct: 134 TFGNVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGSDSH 193

Query: 62  CPVCKEKFELGSEAKMLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDSXXXXXXXXXX 121
           CPVCKEKFEL SEAK LPCNHIYHTDCILPWL QHNTCPVCRLELP Q+S          
Sbjct: 194 CPVCKEKFELESEAKALPCNHIYHTDCILPWLVQHNTCPVCRLELPQQESGHSWGGNGGS 253

Query: 122 XXXXXXEREITHRNLRRRHPFPDF 181
                 ERE+T RNLRRRHPFPDF
Sbjct: 254 NSEDLNEREMTQRNLRRRHPFPDF 277

Query: 182  241
           
Sbjct: 314  277

Query: 242  301
           
Sbjct: 374  277

Query: 302  361
           
Sbjct: 434  277

Query: 362  421
           
Sbjct: 494  277

Query: 422  434
           
Sbjct: 554  277

[Close]
BLAST of WMU56105 vs. NCBI nr
Match: gi|449452702|ref|XP_004144098.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.8e-59
Identity = 112/144 (77.78%), Postives = 117/144 (81.25%), Query Frame = -2 

Query: 2   TFTSVTPEGRSSQRTGLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSH 61
           TF +VTPEGRSSQ TGLEELAAQLSL+E REPVPTPASHS I+A+PTIKINQMHLGTDSH
Sbjct: 134 TFANVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGTDSH 193

Query: 62  CPVCKEKFELGSEAKMLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDSXXXXXXXXXX 121
           CPVCKEKFEL SEAK LPCNHIYH DCILPWL QHNTCPVCRLELP Q+S          
Sbjct: 194 CPVCKEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQQESGHSWGGSGDN 253

Query: 122 XXXXXXEREITHRNLRRRHPFPDF 181
                 EREIT RNLRRRHP PDF
Sbjct: 254 NSEDLNEREITQRNLRRRHPIPDF 277

Query: 182  241
           
Sbjct: 314  277

Query: 242  301
           
Sbjct: 374  277

Query: 302  361
           
Sbjct: 434  277

Query: 362  421
           
Sbjct: 494  277

Query: 422  434
           
Sbjct: 554  277

[Close]
BLAST of WMU56105 vs. NCBI nr
Match: gi|700211291|gb|KGN66387.1| (hypothetical protein Csa_1G600760 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.8e-59
Identity = 112/144 (77.78%), Postives = 117/144 (81.25%), Query Frame = -2 

Query: 2   TFTSVTPEGRSSQRTGLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSH 61
           TF +VTPEGRSSQ TGLEELAAQLSL+E REPVPTPASHS I+A+PTIKINQMHLGTDSH
Sbjct: 192 TFANVTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGTDSH 251

Query: 62  CPVCKEKFELGSEAKMLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQDSXXXXXXXXXX 121
           CPVCKEKFEL SEAK LPCNHIYH DCILPWL QHNTCPVCRLELP Q+S          
Sbjct: 252 CPVCKEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQQESGHSWGGSGDN 311

Query: 122 XXXXXXEREITHRNLRRRHPFPDF 181
                 EREIT RNLRRRHP PDF
Sbjct: 312 NSEDLNEREITQRNLRRRHPIPDF 335

Query: 182  241
           
Sbjct: 372  335

Query: 242  301
           
Sbjct: 432  335

Query: 302  361
           
Sbjct: 492  335

Query: 362  421
           
Sbjct: 552  335

Query: 422  434
           
Sbjct: 612  335

[Close]
BLAST of WMU56105 vs. NCBI nr
Match: gi|703089500|ref|XP_010093819.1| (E3 ubiquitin-protein ligase RING1-like protein [Morus notabilis])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = -2 

Query: 116 GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAK 175
           GLEEL  QL++++ R P   PAS SSI+A+PTIKI Q HL TD HCPVCKEKFELGSEA+
Sbjct: 150 GLEELIGQLTMNDRRGP--PPASRSSIEAMPTIKITQAHLRTDLHCPVCKEKFELGSEAR 209

Query: 176 MLPCNHIYHTDCILPWLAQHNTCPVCRLELP 235
            +PCNHIYH+DCI+PWL QHN+CPVCR+ELP
Sbjct: 210 EMPCNHIYHSDCIVPWLVQHNSCPVCRVELP 238

Query: 236  295
           
Sbjct: 270  238

Query: 296  355
           
Sbjct: 330  238

Query: 356  389
           
Sbjct: 390  238

[Close]
BLAST of WMU56105 vs. NCBI nr
Match: gi|1012202077|ref|XP_015973474.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 73/134 (54.48%), Postives = 86/134 (64.18%), Query Frame = -2 

Query: 14  GLEELAAQLSLDEHREPVPTPASHSSIQALPTIKINQMHLGTDSHCPVCKEKFELGSEAK 73
           GLEEL  QL+++E R P   PA+ SSI A+PTIKI   HL  DSHCPVCKEKFELGSEA+
Sbjct: 159 GLEELIEQLTMNERRGP--PPAARSSIDAMPTIKITSAHLRQDSHCPVCKEKFELGSEAR 218

Query: 74  MLPCNHIYHTDCILPWLAQHNTCPVCRLELPLQ---------DSXXXXXXXXXXXXXXXX 133
            +PCNHIYHTDCI+PWL QHN+CPVCR+ELP Q                           
Sbjct: 219 EMPCNHIYHTDCIVPWLVQHNSCPVCRVELPPQGHVSSRGSRSGGGRNANSSGDSDSSSR 278

Query: 134 EREITHRNLRRRHP 193
            RE +H++  RRHP
Sbjct: 279 SRESSHQSQGRRHP 290

Query: 194  253
           
Sbjct: 339  290

Query: 254  313
           
Sbjct: 399  290

Query: 314  373
           
Sbjct: 459  290

Query: 374  389
           
Sbjct: 519  290

The following BLAST results are available for this feature:
BLAST of WMU56105 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56580.29.4e-3266.67 RING/U-box superfamily protein[more]
AT2G40830.23.6e-3168.48 RING-H2 finger C1A[more]
AT3G10815.12.7e-2650.47 RING/U-box superfamily protein[more]
AT2G39720.12.1e-2364.47 RING-H2 finger C2A[more]
AT3G19950.16.1e-2348.42 RING/U-box superfamily protein[more]
BLAST of WMU56105 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH6.4e-3068.48Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RN126_XENTR3.4e-2349.47E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1[more]
R126A_XENLA4.4e-2349.47E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1[more]
R126B_XENLA7.5e-2349.47E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1[more]
RHC2A_ARATH3.7e-2264.47Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2... [more]
BLAST of WMU56105 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100327|ref|XP_008451039.1|2.2e-5977.78PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|449452702|ref|XP_004144098.1|3.8e-5977.78PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus][more]
gi|700211291|gb|KGN66387.1|3.8e-5977.78hypothetical protein Csa_1G600760 [Cucumis sativus][more]
gi|703089500|ref|XP_010093819.1|1.4e-3271.43E3 ubiquitin-protein ligase RING1-like protein [Morus notabilis][more]
gi|1012202077|ref|XP_015973474.1|1.4e-3254.48PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla011090Cla011090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0126979S1_0126979EST