WMU30262 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU30262
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Chr3 : 25049916 .. 25052139 (-)
Sequence length	548

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTGGGACCCTGCGGAGCAAATTTTGTTGCTCAGGGTCCTCTCGTTCTCTCTCTCTGCCCCTTTGATCCAAATCTTCACCCACCTGTTCTTGTTTCTTCCTTCTTCCCTAGCTTTCCACTGCTCCTACTTCAGCTCCGATTTCTCTACATCTAGGAATAAACCTGGGCTTTTCTTTCAACTGTTGCATTTTGAGAGGAAGATGTCATCTATTGGTGAAGACACCCATTGGTGCTATCAATGCAACCATTCATTCTGGCTTGATGGAGAAGACGTAGTTTGCCCTTATTGTAACGGTGGTTTCGTTGAAGAACTTAACGAAGAACATGATGAAACGGTTCAAAATGACTTTAATTTCAGGCACAGAAGAAGATATTTCAACCCAGGTGCCTCCAATTTTTGAAGCCATGTTTGCATTGATGGGACGAAGAAGCCCTTATCCAAGATTTGGTCTTCTCGAAGCCGTTGATACTTTTACCAGAGAGAGAATGGCTGGAAGAAATCCTAACTTCGACGTTAGGAGGAGATCTGGTTCTGTCCAGGGCAGTAAG

Library


Library category	ESTs
watermelon fruit 10d library	3
watermelon fruit 18d library	4

Homology

[Close]

BLAST of WMU30262 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 2


Query: 200 MSSIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELN 259
           MSSI  +THWC++C  + WL   D VC YC GGFVEE++
Sbjct: 1   MSSI-RNTHWCHRCQRAVWLRARDAVCSYCGGGFVEEID 38

Query: 260  317
           
Sbjct: 61   38

[Close]

BLAST of WMU30262 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 2


Query: 206 SIGEDTHWCYQCNHSFWLDGEDVVCPYCNGGFVEELN 265
           S   +THWC++C  +  L G++ VC YC GGFVEEL+
Sbjct: 2   SSSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD 38

Query: 266  317
           
Sbjct: 62   38

[Close]

BLAST of WMU30262 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.8e-06
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 2


Query: 221 THWCYQCNH--SFWLDGE---DVVCPYCNGGFVEELNEEHDETV 280
           ++WCY C    S W D +    V+CPYCNGGF+EE+ +  + TV
Sbjct: 30  SYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTV 73

Query: 281  338
           
Sbjct: 90   73

[Close]

BLAST of WMU30262 vs. TrEMBL
Match: A0A0A0LZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 3


Query: 357 GTEEDISTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 416
           G EED+STQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV
Sbjct: 111 GIEEDLSTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 170

Query: 417 QG 476
            G
Sbjct: 171 PG 172

Query: 477  536
           
Sbjct: 231  172

Query: 537  543
           
Sbjct: 291  172

[Close]

BLAST of WMU30262 vs. TrEMBL
Match: A0A0A0LZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-23
Identity = 61/104 (58.65%), Postives = 67/104 (64.42%), Query Frame = 2


Query: 41  SFSLSAPLIQIFTHLFLFLPSSLAFHCSYFSSDFSTSRNKPGLFFQLLHFERKMSSIGED 100
           S SLSA L      LFLFL      H  YFS                   ER+MSS GED
Sbjct: 23  SLSLSA-LDPNLHSLFLFLLLPQPSHFPYFS----------------FAIERRMSSFGED 82

Query: 101 THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFN 160
           THWC+QC+HSFWLDGED+VCP+C GGFVEELN+EHDETVQNDFN
Sbjct: 83  THWCHQCHHSFWLDGEDIVCPHCYGGFVEELNDEHDETVQNDFN 109

Query: 161  220
           
Sbjct: 143  109

Query: 221  280
           
Sbjct: 203  109

Query: 281  340
           
Sbjct: 263  109

Query: 341  353
           
Sbjct: 323  109

HSP 2 Score: 69.3 bits (168), Expect = 5.4e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3


Query: 381 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 440
           Q+P IF+A+ A MG+R    RFGL++AVD F R RMAGRN NFDVR RSGS+
Sbjct: 57  QMPDIFDAIHAFMGQRGTDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSL 108

Query: 441  500
           
Sbjct: 117  108

Query: 501  537
           
Sbjct: 177  108

[Close]

BLAST of WMU30262 vs. TrEMBL
Match: A0A151QZ96_CAJCA (RING finger protein 126 family OS=Cajanus cajan GN=KK1_043322 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 2


Query: 221 THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNEEHDETVQNDFN 280
           THWCY+C     LDG DVVCPYC+ GF++EL+E    T  + F+
Sbjct: 6   THWCYECRQPIVLDGRDVVCPYCDQGFIQELDELRGTTPHHPFS 49

Query: 281  340
           
Sbjct: 66   49

Query: 341  353
           
Sbjct: 126  49

HSP 2 Score: 69.3 bits (168), Expect = 5.4e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3


Query: 381 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 440
           Q+P IF+A+ A MG+R    RFGL++AVD F R RMAGRN NFDVR RSGS+
Sbjct: 59  QMPDIFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSL 110

Query: 441  500
           
Sbjct: 119  110

Query: 501  537
           
Sbjct: 179  110

[Close]

BLAST of WMU30262 vs. TrEMBL
Match: I1M784_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G039000 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 2


Query: 221 THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNE 280
           THWCY C     LDG D VCPYC+GGFV+EL+E
Sbjct: 6   THWCYACRQPIVLDGRDPVCPYCDGGFVQELDE 38

Query: 281  320
           
Sbjct: 66   38

HSP 2 Score: 69.3 bits (168), Expect = 5.4e-09
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3


Query: 381 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 440
           Q+P IF+A+ A MG+R    RFGL++AVD F R RMAGRN NFDVR RSGS+
Sbjct: 59  QMPDIFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSL 110

Query: 441  500
           
Sbjct: 119  110

Query: 501  537
           
Sbjct: 179  110

[Close]

BLAST of WMU30262 vs. TrEMBL
Match: A0A0B2R254_GLYSO (E3 ubiquitin-protein ligase RING1-like OS=Glycine soja GN=glysoja_038229 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 2


Query: 221 THWCYQCNHSFWLDGEDVVCPYCNGGFVEELNE 280
           THWCY C     LDG D VCPYC+GGFV+EL+E
Sbjct: 6   THWCYACRQPIVLDGRDPVCPYCDGGFVQELDE 38

Query: 281  320
           
Sbjct: 66   38

HSP 2 Score: 68.6 bits (166), Expect = 9.2e-09
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3


Query: 381 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGS 440
           Q+P +F+A+ A MG+R    RFGL++AVD F R RMAGRN NFDVR RSGS
Sbjct: 60  QMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRARSGS 110

Query: 441  500
           
Sbjct: 120  110

Query: 501  534
           
Sbjct: 180  110

[Close]

BLAST of WMU30262 vs. NCBI nr
Match: gi|449452702|ref|XP_004144098.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 3


Query: 357 GTEEDISTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 416
           G EED+STQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV
Sbjct: 53  GIEEDLSTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 112

Query: 417 QG 476
            G
Sbjct: 113 PG 114

Query: 477  536
           
Sbjct: 173  114

Query: 537  543
           
Sbjct: 233  114

[Close]

BLAST of WMU30262 vs. NCBI nr
Match: gi|700211291|gb|KGN66387.1| (hypothetical protein Csa_1G600760 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 3


Query: 357 GTEEDISTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 416
           G EED+STQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV
Sbjct: 111 GIEEDLSTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 170

Query: 417 QG 476
            G
Sbjct: 171 PG 172

Query: 477  536
           
Sbjct: 231  172

Query: 537  543
           
Sbjct: 291  172

[Close]

BLAST of WMU30262 vs. NCBI nr
Match: gi|659100327|ref|XP_008451039.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 3


Query: 357 GTEEDISTQVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 416
           G EED+STQVPPIFEAMFALMGRR+PYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV
Sbjct: 53  GIEEDLSTQVPPIFEAMFALMGRRNPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSV 112

Query: 417 QG 476
            G
Sbjct: 113 PG 114

Query: 477  536
           
Sbjct: 173  114

Query: 537  543
           
Sbjct: 233  114

[Close]

BLAST of WMU30262 vs. NCBI nr
Match: gi|1021488476|ref|XP_016187219.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis ipaensis])

HSP 1 Score: 75.9 bits (185), Expect = 8.3e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 3


Query: 381 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVQG 440
           Q+P  F+A+ A MGRR P PRFG ++AVD F R+RMAGR+PNFDVR RSG   G
Sbjct: 58  QMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPG 111

Query: 441  500
           
Sbjct: 118  111

Query: 501  543
           
Sbjct: 178  111

[Close]

BLAST of WMU30262 vs. NCBI nr
Match: gi|1012202077|ref|XP_015973474.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis])

HSP 1 Score: 75.9 bits (185), Expect = 8.3e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 3


Query: 381 QVPPIFEAMFALMGRRSPYPRFGLLEAVDTFTRERMAGRNPNFDVRRRSGSVQG 440
           Q+P  F+A+ A MGRR P PRFG ++AVD F R+RMAGR+PNFDVR RSG   G
Sbjct: 58  QMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPG 111

Query: 441  500
           
Sbjct: 118  111

Query: 501  543
           
Sbjct: 178  111

The following BLAST results are available for this feature:

BLAST of WMU30262 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56580.2	3.1e-08	56.41	RING/U-box superfamily protein	[more]
AT2G40830.2	1.7e-06	51.35	RING-H2 finger C1A	[more]
AT3G46620.1	3.8e-06	45.45	zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of WMU30262 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZS8_CUCSA	4.1e-25	95.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1	[more]
A0A0A0LZS8_CUCSA	1.3e-23	58.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1	[more]
A0A151QZ96_CAJCA	2.5e-06	52.27	RING finger protein 126 family OS=Cajanus cajan GN=KK1_043322 PE=4 SV=1	[more]
I1M784_SOYBN	9.6e-06	66.67	Uncharacterized protein OS=Glycine max GN=GLYMA_14G039000 PE=4 SV=1	[more]
A0A0B2R254_GLYSO	9.6e-06	66.67	E3 ubiquitin-protein ligase RING1-like OS=Glycine soja GN=glysoja_038229 PE=4 SV...	[more]

BLAST of WMU30262 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452702\|ref\|XP_004144098.1\|	4.5e-25	95.16	PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus]	[more]
gi\|700211291\|gb\|KGN66387.1\|	4.5e-25	95.16	hypothetical protein Csa_1G600760 [Cucumis sativus]	[more]
gi\|659100327\|ref\|XP_008451039.1\|	1.0e-24	93.55	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|1021488476\|ref\|XP_016187219.1\|	8.3e-11	62.96	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis ipaensis]	[more]
gi\|1012202077\|ref\|XP_015973474.1\|	8.3e-11	62.96	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Arachis duranensis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011090	Cla011090	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0000825	S1_0000825	EST
S1_0071716	S1_0071716	EST
S1_0088077	S1_0088077	EST
S2_0045817	S2_0045817	EST
S2_0118181	S2_0118181	EST
S2_0149476	S2_0149476	EST
S2_0181894	S2_0181894	EST