Cp4.1LG18g01100 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g01100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	E3 ubiquitin ligase
Location	Cp4.1LG18 : 2716514 .. 2719790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACCAAATACTCTTAGCAATAGTCAATAGTCACAAATCCAATGTAGCATCATCCATTTTTCAACCCTAAAAGAACTTTAAACATTGACCCAAATTGGTATTTTTCAAGTAATATAACCTTATAGTATGAATCAAATATCTTTAAAGTAAATGGACCAAATTGATATATAGGTCAAAATATAGGGAGTAAAATGCAATTTTACTCTGCCTTTTTCTTCTATAGTGAGTATTCAATCCGTGAGTAATATCCTTAGATTCGCTTCCAGCTTAATTGGATGTCGCTTCCTTGTCTGGGCTAAGCTTATACAATATTAATCCTTTTTCATATTCTAGGTTCTCTTTTTATGCAGGTTCATAGCCTTTTTTGTCTGTGATGCAACCTTCATGCCATTTACTTTACTAGTTTTTCTTTATCTTTTACGATATTGTCACCAGATATGTCTTCATTTTACGGGCATTTACTGAGTTTCCGGCCGTCGGGGCAAGTACTAGGCCCTGATGAGTAGGAGGGCGCGGTGGTCGCTGCAAAACCTTGGGAGTGATCTCGGGCGGAGCAGCCATCGTTGCAGATTTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGACCGAAGAGGGAAAAAGTTCCATGTGAATGGCACTTGCACATGGGTTAGTCGATCCTAAGAGATGGGGGAAGCTTATCTAATAGTGCAATAGCGCGAGCTTCAAAAGGGAATCAGGTTAAAATTCCTAAACTTGGACGTGGTGGCCGACGGCGAAGTTAAACTTGGTTATTTGGTTTTTTTTCCAAATTGTATTCTATGAACGGTCAGATTATTCTGTGCTTAGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATCTATTGTGTGTAAACGTTTGATCTTGTCTACAAAATTGATTTTCTTAACCAATTGACATTTCATTGCAGAATCCTCTACATGTAGGAACAAACCTGGGCTTTTCTTTCAACTGTTGCAATGGAGAGGCAGATGTCGTCTGATGGCGACGACACCCATTGGTGCTATCAATGCAGCCATTTTTTCTGGCTTAATGGAGAAGAAATAGTTTGCCATTATTGTAATGGTGGTTTCATTGAAGAACTTAACAATGCACATGATGAAACGGTTCAAAATGACTAATCCAGACACAGAAGAAGATCTTTCAACCGAAGTGCCTCCAATTTTTGAAGTCATGTTTGCATTGATGGGGCGAAGAATCCCCTATCCAAGATTTGATCTTCTTGAGGCCGTCAATGCTTTTACCAGCGAGAGAATGGCTGGAAGACTTGATGTGAGATCTCACATTGGTTGGGGAGGAGAACGAAACACCCTTATTAGGGTATGGAAACGTCTCCCTTGCAGACGCGTTTTAAAAACCTTGAAGGGAAGCTCGAAAGAGAAAGCCCAAAGAAGATAATATCTGCTAGCGGAGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACCGGATGATGTGCCAGCGAGGAGGCTATTCCCCAAATGGGGGTAGACACAAGGCGGTGTGCCAGCAAGGACGCTGGGCCCTGAACGGGGGTGTGAAAACTCCCTACCAGACGCGTTCCACTCAAGGGAAAGCTCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGGACCGTTACACCTGACTTCGACGTTAGGAGGCGACCCAGTTCTGTCCCAGGGCAGAATTTGGATTCTTTCAACACTTTTTGGTTATTCCATGAACGCATGCCTGGTATGACTTTTGCTAGCGTCACTCCAGAAGGTAGATCGAGTCAGCGTACGGGACTCGAAGAGTTAGCTGCACAGCTTTCCTTGAATGAACACAGGGATTCAGTTCCAACTCCTGCTTCCAACTCTTCTATAGAAGCAATGCCTACAATCAAGATTGGCCAAATGCACCTTGCAACCAACTCTCATTGTCCAGTCAGAAAAATTTGAGCTGGGATCTGAAGCCAAAGTGATGCCATGTAACCATATTTATCACACTGATTGCATTCTTCCTTGGCTAGTCCAACACAATACTTGCCCGGTATGTCGGCTCGAGCTGCCTCAGCAGGATAGGGGAGGGAACAGCAGCAGCAATACTTAATTCACAAATGAGAGAGAGATTACTCAACAAAATCTGAGGATGCTTCGATTCCCAGATGTTTTTGCTCCTCGTCGAATCACTCGTTTCAGCAGTGGGATTCATACAAATGGCTTATCTACAGATCAACAACATGATAACGAGACGAGGTACCCCTGAATAACTTTTTGATTGCCAAGTCTATTGCTTTTCTCTACCTGAGCATGATATGTGAAGCCTATGTTCTAATGCGGCAATATTTATAAGAATCAGCTCTCAAGTTAGTGATATCTAGGGCTGTTCTTTTTTGTTTCTTTTCTTGTGTATAGTGATATGAAAAGAAAAAAATCACTATCTGTTACGATGACTTGCACTAGTAAAAGGGGTTCTAGAGCTGAAATCATATAAGTATAGTTATATATGTTGGGGATTGTTGGGACTACCTTGGCTAATTTAGGGAATGATCGTGAGTTTATAAGTAACGAATACATCTTCATTGATATGAGGCCTTTTGGAGAAGCCCAAAGGAAAGCCATGAGAGCTTATGCGTAAAGTGGACAATATCATACCGTTGTGGAGATTCGTGATTCCTAATATGGTATCTAAGCCAGCCCCTAAAGTTAGCCATGTCAATAGAATCCTCAAATGTCGAACAAAGAATCGTGAGCCTCGAAGGTGTAGTCAAAAGTAACTAAATTATCGAGCAAATAGTGTACTTTGTTTGAGGGCTCCAGAGAAGGAGTCGAGCCTCAATTAAGGGGAGGCTCTATGGTATACTGTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAAGGAGTCCCACCTTGGCTAATTTAGGGAATGATCACGAGTTTATAAGTAAGAATACATCTTCAGTGGTATGTGGCCTTTTGGGGAAGCCCGAAGGAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACGATTGTGGAGATCCGTGATTTCTAACAATATGTTCCACAGAAAGTCGTTCTCATTAGTGAGCTTCAATAATTAGAAGATGAGATTTATATGGGCAAGATTTGAAAAGGAGCAAGAGATTTGATTTTGTGTTTATATGGTTATGCATTTTGGCATTCACTTATTGCATCTAAGATTCTCACAGATGGGCTGAAATGACCATTGCTTGTTTCTGACTTCTTTTTTTCCTTTTGAAGTATCTTGATT

mRNA sequence

CTTACCAAATACTCTTAGCAATAGTCAATAGTCACAAATCCAATTTTGCCATTATTGTAATGGTGGTTTCATTGAAGAACTTAACAATGCACATGATGAAACGGTTCAAAATGACTAATCCAGACACAGAAGAAGATCTTTCAACCGAAGTGCCTCCAATTTTTGAAGTCATCGTCACTCCAGAAGGTAGATCGAGTCAGCGTACGGGACTCGAAGAGTTAGCTGCACAGCTTTCCTTGAATGAACACAGGGATTCATCAGAAAAATTTGAGCTGGGATCTGAAGCCAAAGTGATGCCATGTAACCATATTTATCACACTGATTGCATTCTTCCTTGGCTAGTCCAACACAATACTTGCCCGATTACTCAACAAAATCTGAGGATGCTTCGATTCCCAGATGTTTTTGCTCCTCGTCGAATCACTCGTTTCAGCAGTGGGATTCATACAAATGGCTTATCTACAGATCAACAACATGATAACGAGACGAGTATCTTGATT

Coding sequence (CDS)

ATGGTGGTTTCATTGAAGAACTTAACAATGCACATGATGAAACGGTTCAAAATGACTAATCCAGACACAGAAGAAGATCTTTCAACCGAAGTGCCTCCAATTTTTGAAGTCATCGTCACTCCAGAAGGTAGATCGAGTCAGCGTACGGGACTCGAAGAGTTAGCTGCACAGCTTTCCTTGAATGAACACAGGGATTCATCAGAAAAATTTGAGCTGGGATCTGAAGCCAAAGTGATGCCATGTAACCATATTTATCACACTGATTGCATTCTTCCTTGGCTAGTCCAACACAATACTTGCCCGATTACTCAACAAAATCTGAGGATGCTTCGATTCCCAGATGTTTTTGCTCCTCGTCGAATCACTCGTTTCAGCAGTGGGATTCATACAAATGGCTTATCTACAGATCAACAACATGATAACGAGACGAGTATCTTGATT

Protein sequence

MVVSLKNLTMHMMKRFKMTNPDTEEDLSTEVPPIFEVIVTPEGRSSQRTGLEELAAQLSLNEHRDSSEKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSSGIHTNGLSTDQQHDNETSILI

Homology

[Close]

BLAST of Cp4.1LG18g01100 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-14
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRI-TRFSS 127
           ++FELGSEAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L     P     R   TR   
Sbjct: 195 DEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSASGPSSSQNRTTPTRNYR 254

Query: 128 GIHTNGLSTDQQHDNE 143
              ++  S  +++ NE
Sbjct: 255 SSSSSSSSNSRENGNE 270

[Close]

BLAST of Cp4.1LG18g01100 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           + FE G+EAK MPC H+YH DC+LPWL  HN+CP+ +  L
Sbjct: 229 DDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHEL 268

[Close]

BLAST of Cp4.1LG18g01100 vs. Swiss-Prot
Match: R126B_XENLA (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSSG 127
           E + +G   + +PCNH++H DCI+PWL QH+TCP+ +++L                FSS 
Sbjct: 233 EDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNPPGLTDMTFSSS 292

Query: 128 IHTNGLSTDQQHDNETS 145
             ++  ST    +N T+
Sbjct: 293 STSSSSSTSPTDENNTA 309

[Close]

BLAST of Cp4.1LG18g01100 vs. Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           E F L S A+ MPCNHIYH DCILPWL   N+CP+ +  L
Sbjct: 206 ENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHEL 245

[Close]

BLAST of Cp4.1LG18g01100 vs. Swiss-Prot
Match: RN126_XENTR (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 19/40 (47.50%), Postives = 31/40 (77.50%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           E + +G   + +PCNH++H DCI+PWL QH+TCP+ +++L
Sbjct: 232 EDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271

[Close]

BLAST of Cp4.1LG18g01100 vs. TrEMBL
Match: A0A0A0LZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 85/168 (50.60%), Postives = 90/168 (53.57%), Query Frame = 1


Query: 39  VTPEGRSSQRTGLEELAAQLSLNEHRDS-------------------------------- 98
           VTPEGRSSQ TGLEELAAQLSLNE R+                                 
Sbjct: 196 VTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGTDSHCPVC 255

Query: 99  SEKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCP------------------------- 143
            EKFEL SEAK +PCNHIYH DCILPWLVQHNTCP                         
Sbjct: 256 KEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQQESGHSWGGSGDNNSED 315

[Close]

BLAST of Cp4.1LG18g01100 vs. TrEMBL
Match: R0HTW5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023620mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.0e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSSG 127
           ++FELGSEAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L   R P     R  TR    
Sbjct: 195 DEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSARGPSSSQNRTTTRNYRN 254

Query: 128 IHTNGLSTDQQHDNE 143
             +N  S+ +++ NE
Sbjct: 255 SSSNSSSSSRENGNE 269

[Close]

BLAST of Cp4.1LG18g01100 vs. TrEMBL
Match: D7LFV0_ARALL (Ring-H2 finger C1A OS=Arabidopsis lyrata subsp. lyrata GN=RHC1A PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSSG 127
           ++FELGSEAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L   R P     R  TR    
Sbjct: 197 DEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSARGPSSSQNRTTTRNYRS 256

Query: 128 IHTNGLSTDQQHDNE 143
             +N  S  +++ NE
Sbjct: 257 NSSNSSSNSRENGNE 271

[Close]

BLAST of Cp4.1LG18g01100 vs. TrEMBL
Match: M5WT59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008742mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-13
Identity = 49/114 (42.98%), Postives = 61/114 (53.51%), Query Frame = 1


Query: 50  GLEELAAQLSLNEHR-------------------------DS-----SEKFELGSEAKVM 109
           GLEEL  QLS N+ R                         DS      +KFELGSEA+ M
Sbjct: 140 GLEELFEQLSANDRRGPPPASRVSIDAMPTIKITNRHLRSDSHCPVCKDKFELGSEARQM 199

Query: 110 PCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSS-GIHTNG 133
           PCNH+YHTDCI+PWLVQHN+CP+ +Q L +       +    +R SS G +TNG
Sbjct: 200 PCNHLYHTDCIVPWLVQHNSCPVCRQELPLQGAASGGSSNGRSRSSSFGSNTNG 253

[Close]

BLAST of Cp4.1LG18g01100 vs. TrEMBL
Match: V4M8X9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016932mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-13
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITR--FS 127
           ++FELG+EAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L   R       R  TR   S
Sbjct: 195 DEFELGAEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSTRGSSSSQNRTTTRNYSS 254

Query: 128 SGIHTNGLSTDQQHDNETS 145
           S I +N   +  +  N  S
Sbjct: 255 SSISSNNRESSSERRNPFS 273

[Close]

BLAST of Cp4.1LG18g01100 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRI-TRFSS 127
           ++FELGSEAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L     P     R   TR   
Sbjct: 195 DEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSASGPSSSQNRTTPTRNYR 254

Query: 128 GIHTNGLSTDQQHDNE 143
              ++  S  +++ NE
Sbjct: 255 SSSSSSSSNSRENGNE 270

[Close]

BLAST of Cp4.1LG18g01100 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-13
Identity = 27/40 (67.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           ++FEL SEAK MPC+HIYH+DCI+PWLVQHN+CP+ ++ L
Sbjct: 191 DEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKEL 230

[Close]

BLAST of Cp4.1LG18g01100 vs. TAIR10
Match: AT3G10815.1 (AT3G10815.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           ++FE+GS+A+ MPC HIYH++CILPWLVQ NTCP+ ++ L
Sbjct: 126 DQFEIGSDARKMPCKHIYHSECILPWLVQRNTCPVCRKEL 165

[Close]

BLAST of Cp4.1LG18g01100 vs. TAIR10
Match: AT2G44330.1 (AT2G44330.1 RING/U-box superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           E F +G  A+ +PCNH+YH DCI+PWL  HN+CP+ +  L
Sbjct: 101 EDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVEL 140

[Close]

BLAST of Cp4.1LG18g01100 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNL 108
           + FE+G+EAK+MPC H +H+DC+LPWL  H++CP+ +  L
Sbjct: 228 DDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQL 267

[Close]

BLAST of Cp4.1LG18g01100 vs. NCBI nr
Match: gi|659100327|ref|XP_008451039.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-31
Identity = 85/168 (50.60%), Postives = 91/168 (54.17%), Query Frame = 1


Query: 39  VTPEGRSSQRTGLEELAAQLSLNEHRDS-------------------------------- 98
           VTPEGRSSQ TGLEELAAQLSLNE R+                                 
Sbjct: 138 VTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGSDSHCPVC 197

Query: 99  SEKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPI------------------------ 143
            EKFEL SEAK +PCNHIYHTDCILPWLVQHNTCP+                        
Sbjct: 198 KEKFELESEAKALPCNHIYHTDCILPWLVQHNTCPVCRLELPQQESGHSWGGNGGSNSED 257

[Close]

BLAST of Cp4.1LG18g01100 vs. NCBI nr
Match: gi|449452702|ref|XP_004144098.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 85/168 (50.60%), Postives = 90/168 (53.57%), Query Frame = 1


Query: 39  VTPEGRSSQRTGLEELAAQLSLNEHRDS-------------------------------- 98
           VTPEGRSSQ TGLEELAAQLSLNE R+                                 
Sbjct: 138 VTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGTDSHCPVC 197

Query: 99  SEKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCP------------------------- 143
            EKFEL SEAK +PCNHIYH DCILPWLVQHNTCP                         
Sbjct: 198 KEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQQESGHSWGGSGDNNSED 257

[Close]

BLAST of Cp4.1LG18g01100 vs. NCBI nr
Match: gi|700211291|gb|KGN66387.1| (hypothetical protein Csa_1G600760 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 85/168 (50.60%), Postives = 90/168 (53.57%), Query Frame = 1


Query: 39  VTPEGRSSQRTGLEELAAQLSLNEHRDS-------------------------------- 98
           VTPEGRSSQ TGLEELAAQLSLNE R+                                 
Sbjct: 196 VTPEGRSSQHTGLEELAAQLSLNEQREPVPTPASHSCIEAMPTIKINQMHLGTDSHCPVC 255

Query: 99  SEKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCP------------------------- 143
            EKFEL SEAK +PCNHIYH DCILPWLVQHNTCP                         
Sbjct: 256 KEKFELESEAKALPCNHIYHNDCILPWLVQHNTCPVCRLELPQQESGHSWGGSGDNNSED 315

[Close]

BLAST of Cp4.1LG18g01100 vs. NCBI nr
Match: gi|565473879|ref|XP_006294585.1| (hypothetical protein CARUB_v10023620mg [Capsella rubella])

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSSG 127
           ++FELGSEAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L   R P     R  TR    
Sbjct: 195 DEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSARGPSSSQNRTTTRNYRN 254

Query: 128 IHTNGLSTDQQHDNE 143
             +N  S+ +++ NE
Sbjct: 255 SSSNSSSSSRENGNE 269

[Close]

BLAST of Cp4.1LG18g01100 vs. NCBI nr
Match: gi|297824021|ref|XP_002879893.1| (ring-H2 finger C1A [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-14
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 68  EKFELGSEAKVMPCNHIYHTDCILPWLVQHNTCPITQQNLRMLRFPDVFAPRRITRFSSG 127
           ++FELGSEAK MPCNHIYH+DCI+PWLVQHN+CP+ +Q L   R P     R  TR    
Sbjct: 197 DEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSARGPSSSQNRTTTRNYRS 256

Query: 128 IHTNGLSTDQQHDNE 143
             +N  S  +++ NE
Sbjct: 257 NSSNSSSNSRENGNE 271

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g01100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHC1A_ARATH	3.8e-14	48.68	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2...	[more]
RING1_GOSHI	2.2e-09	57.50	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
R126B_XENLA	8.2e-09	33.77	E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1	[more]
RHC2A_ARATH	1.1e-08	60.00	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2...	[more]
RN126_XENTR	1.4e-08	47.50	E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g01100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZS8_CUCSA	1.5e-30	50.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600760 PE=4 SV=1	[more]
R0HTW5_9BRAS	7.0e-15	52.00	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023620mg PE=4 SV=1	[more]
D7LFV0_ARALL	1.2e-14	52.00	Ring-H2 finger C1A OS=Arabidopsis lyrata subsp. lyrata GN=RHC1A PE=4 SV=1	[more]
M5WT59_PRUPE	5.0e-13	42.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008742mg PE=4 SV=1	[more]
V4M8X9_EUTSA	6.5e-13	49.37	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016932mg PE=4 SV=1	[more]

BLAST of Cp4.1LG18g01100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40830.2	2.1e-15	48.68	RING-H2 finger C1A	[more]
AT3G56580.2	3.4e-13	67.50	RING/U-box superfamily protein	[more]
AT3G10815.1	1.7e-12	62.50	RING/U-box superfamily protein	[more]
AT2G44330.1	4.6e-10	52.50	RING/U-box superfamily protein	[more]
AT1G55530.1	4.6e-10	52.50	RING/U-box superfamily protein	[more]

BLAST of Cp4.1LG18g01100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100327\|ref\|XP_008451039.1\|	4.5e-31	50.60	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|449452702\|ref\|XP_004144098.1\|	2.2e-30	50.60	PREDICTED: E3 ubiquitin-protein ligase RNF126-B-like [Cucumis sativus]	[more]
gi\|700211291\|gb\|KGN66387.1\|	2.2e-30	50.60	hypothetical protein Csa_1G600760 [Cucumis sativus]	[more]
gi\|565473879\|ref\|XP_006294585.1\|	1.0e-14	52.00	hypothetical protein CARUB_v10023620mg [Capsella rubella]	[more]
gi\|297824021\|ref\|XP_002879893.1\|	1.7e-14	52.00	ring-H2 finger C1A [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g01100.1	Cp4.1LG18g01100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 69..102 score: 1.
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 68..107 score: 2.0
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 68..102 score: 4.7
None	No IPR available	PANTHER	PTHR22763:SF24	SUBFAMILY NOT NAMED	coord: 68..102 score: 4.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 69..106 score: 1.56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g01100	Cucsa.142510	Cucumber (Gy14) v1	cgycpeB0382
Cp4.1LG18g01100	CmoCh10G010480	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g01100	Cla011090	Watermelon (97103) v1	cpewmB355
Cp4.1LG18g01100	Csa1G600760	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g01100	MELO3C015603	Melon (DHL92) v3.5.1	cpemeB329
Cp4.1LG18g01100	ClCG03G014340	Watermelon (Charleston Gray)	cpewcgB327
Cp4.1LG18g01100	CSPI01G29460	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g01100	Lsi06G004160	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g01100	MELO3C015603.2	Melon (DHL92) v3.6.1	cpemedB387
Cp4.1LG18g01100	CsaV3_1G041880	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g01100	Bhi02G001433	Wax gourd	cpewgoB0474
Cp4.1LG18g01100	CsGy1G028740	Cucumber (Gy14) v2	cgybcpeB039

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g01100	Cp4.1LG04g11630	Cucurbita pepo (Zucchini)	cpecpeB363

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g01100	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG18g01100	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g01100	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g01100	Cucurbita maxima (Rimu)	cmacpeB567
Cp4.1LG18g01100	Cucurbita maxima (Rimu)	cmacpeB632
Cp4.1LG18g01100	Cucurbita moschata (Rifu)	cmocpeB104
Cp4.1LG18g01100	Silver-seed gourd	carcpeB0033
Cp4.1LG18g01100	Silver-seed gourd	carcpeB0247
Cp4.1LG18g01100	Silver-seed gourd	carcpeB0735