Cla009441 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009441
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Phosphatidylserine decarboxylase 2 (AHRD V1 -- F4KAK5_ARATH)
Location	Chr9 : 17652559 .. 17652941 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGTGCCACTTCGAAGATCGATTCCTCCTCTTCTTCTGATCCCGATGCTGAAGAATCGCGTATGGCTCGATTCAAGAATCGTGTACATCTTCGTCGCTTTCTTCGTAGGCGTCGTAAAGCCACCAATGGCCGAGGCTTTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGTAATTCTTTGCCTACCTTAACGCTTTGTTGCCTTGATTTGTCTCTCCATTTGATGTGGTTTGCTATTGCTTGTTTACAGGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGAGAGCAGACTTTTCGGACGGGAATCTCTGATCAGTTAAGTGCCTGA

mRNA sequence

ATGGGGAGTGCCACTTCGAAGATCGATTCCTCCTCTTCTTCTGATCCCGATGCTGAAGAATCGCGTATGGCTCGATTCAAGAATCGTGTACATCTTCGTCGCTTTCTTCGTAGGCGTCGTAAAGCCACCAATGGCCGAGGCTTTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGAGAGCAGACTTTTCGGACGGGAATCTCTGATCAGTTAAGTGCCTGA

Coding sequence (CDS)

ATGGGGAGTGCCACTTCGAAGATCGATTCCTCCTCTTCTTCTGATCCCGATGCTGAAGAATCGCGTATGGCTCGATTCAAGAATCGTGTACATCTTCGTCGCTTTCTTCGTAGGCGTCGTAAAGCCACCAATGGCCGAGGCTTTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGAGAGCAGACTTTTCGGACGGGAATCTCTGATCAGTTAAGTGCCTGA

Protein sequence

MGSATSKIDSSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSVEDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQLSA

Homology

[Close]

BLAST of Cla009441 vs. Swiss-Prot
Match: PSD2_ARATH (Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-15
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 17 DAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSVEDFAGIAVLTLIRARMNFK 76
          +A+ESR +R ++++   R  RR  +++         +  S EDF+GIA+LTLI A M FK
Sbjct: 8  EAKESRRSRLRHKLQKFRIHRRHLRSSRNSAGMVIQRTVSAEDFSGIALLTLIGAEMKFK 67

Query: 77 DKWLACVSFGEQTFRTGISD 97
          DKWLACVSFGEQTFRT ISD
Sbjct: 68 DKWLACVSFGEQTFRTEISD 87

[Close]

BLAST of Cla009441 vs. Swiss-Prot
Match: PSD3_ARATH (Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.8e-14
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 12 SSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRS---HTKLGSVEDFAGIAVLTL 71
          + +  + +ESR  R K R  ++ F  RRR +  G G  S     +  S +DFAGIA+LTL
Sbjct: 3  NGNSTETKESR--RSKMRKKIQNFRSRRRLSRPGSGSVSGLASQRSVSADDFAGIALLTL 62

Query: 72 IRARMNFKDKWLACVSFGEQTFRTGISD 97
          I A M FKDKWLACVSFGEQTFR+ ISD
Sbjct: 63 IGAEMKFKDKWLACVSFGEQTFRSEISD 88

[Close]

BLAST of Cla009441 vs. TrEMBL
Match: A0A0A0K2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058530 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-39
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1   MGSATSKIDSSS----SSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGS 60
           MG+ TSK DSSS    SSDPDAEESR++RFKNRVHLRRFLRRRRK TNGR FRSHTKLGS
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRAFRSHTKLGS 60

Query: 61  VEDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 97
            EDFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  AEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

[Close]

BLAST of Cla009441 vs. TrEMBL
Match: A0A061E2K3_THECC (Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 1  MGSATSKID---SSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSV 60
          MG  +SK D   SSSSSD D + SR++R K R+ L R    R      RG  S  KL + 
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRT-----RGSSSQQKLNAA 60

Query: 61 EDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 98
          EDFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

[Close]

BLAST of Cla009441 vs. TrEMBL
Match: A0A061E1F1_THECC (Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 1  MGSATSKID---SSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSV 60
          MG  +SK D   SSSSSD D + SR++R K R+ L R    R      RG  S  KL + 
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRT-----RGSSSQQKLNAA 60

Query: 61 EDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 98
          EDFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

[Close]

BLAST of Cla009441 vs. TrEMBL
Match: A0A0B0MD54_GOSAR (Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium arboreum GN=PSD2 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-20
Identity = 59/98 (60.20%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 1  MGSATSKID-SSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSVED 60
          MG  +SK D SSSSSD DA+ SR++R K+R+   R  RRRR  +      SH KL + ED
Sbjct: 1  MGHGSSKEDGSSSSSDEDAKPSRISRVKHRLRRHRLRRRRRSDS------SHKKLFAAED 60

Query: 61 FAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 98
          FAGIA LTLI A M FKDKWLACVSFGEQTFRT +S +
Sbjct: 61 FAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSTE 92

[Close]

BLAST of Cla009441 vs. TrEMBL
Match: A0A0D2PM37_GOSRA (Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium raimondii GN=PSD2 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 1  MGSATSKID-SSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSVED 60
          MG  +SK D SSSSSD DA+ SR++R K R  LRR   RRR+ ++     SH KL + ED
Sbjct: 1  MGHGSSKEDGSSSSSDEDAKPSRISRVKQR--LRRHRLRRRRGSDS----SHKKLFAAED 60

Query: 61 FAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 98
          FAGIA LTLI A M FKDKWLACVSFGEQTFRT +S++
Sbjct: 61 FAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSNE 92

[Close]

BLAST of Cla009441 vs. NCBI nr
Match: gi|659110477|ref|XP_008455245.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-40
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 1


Query: 1   MGSATSKIDSSSSS-----DPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLG 60
           MG+ TSK+DSSSSS     DPDAEESR++RFKNRVHLRRFLRRRRK TNGRGFRSHTKLG
Sbjct: 1   MGNGTSKLDSSSSSSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRGFRSHTKLG 60

Query: 61  SVEDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 97
           S EDFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  SAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 101

[Close]

BLAST of Cla009441 vs. NCBI nr
Match: gi|778724254|ref|XP_011658767.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-39
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1   MGSATSKIDSSS----SSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGS 60
           MG+ TSK DSSS    SSDPDAEESR++RFKNRVHLRRFLRRRRK TNGR FRSHTKLGS
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRAFRSHTKLGS 60

Query: 61  VEDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 97
            EDFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  AEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

[Close]

BLAST of Cla009441 vs. NCBI nr
Match: gi|700188445|gb|KGN43678.1| (hypothetical protein Csa_7G058530 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-39
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1   MGSATSKIDSSS----SSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGS 60
           MG+ TSK DSSS    SSDPDAEESR++RFKNRVHLRRFLRRRRK TNGR FRSHTKLGS
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRAFRSHTKLGS 60

Query: 61  VEDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 97
            EDFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  AEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

[Close]

BLAST of Cla009441 vs. NCBI nr
Match: gi|590688749|ref|XP_007043036.1| (Phosphatidylserine decarboxylase 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 1  MGSATSKID---SSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSV 60
          MG  +SK D   SSSSSD D + SR++R K R+ L R    R      RG  S  KL + 
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRT-----RGSSSQQKLNAA 60

Query: 61 EDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 98
          EDFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

[Close]

BLAST of Cla009441 vs. NCBI nr
Match: gi|590688753|ref|XP_007043037.1| (Phosphatidylserine decarboxylase 2 isoform 2 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 60/100 (60.00%), Postives = 67/100 (67.00%), Query Frame = 1


Query: 1  MGSATSKID---SSSSSDPDAEESRMARFKNRVHLRRFLRRRRKATNGRGFRSHTKLGSV 60
          MG  +SK D   SSSSSD D + SR++R K R+ L R    R      RG  S  KL + 
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRT-----RGSSSQQKLNAA 60

Query: 61 EDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 98
          EDFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

The following BLAST results are available for this feature:

BLAST of Cla009441 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSD2_ARATH	3.0e-15	52.50	Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=...	[more]
PSD3_ARATH	5.8e-14	52.27	Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=...	[more]

BLAST of Cla009441 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2G8_CUCSA	2.1e-39	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058530 PE=4 SV=1	[more]
A0A061E2K3_THECC	2.2e-20	60.00	Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=...	[more]
A0A061E1F1_THECC	2.2e-20	60.00	Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=...	[more]
A0A0B0MD54_GOSAR	4.9e-20	60.20	Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium arboreum GN=PSD2 PE=3 ...	[more]
A0A0D2PM37_GOSRA	1.1e-19	61.22	Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium raimondii GN=PSD2 PE=3...	[more]

BLAST of Cla009441 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110477\|ref\|XP_008455245.1\|	2.1e-40	85.15	PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo]	[more]
gi\|778724254\|ref\|XP_011658767.1\|	3.0e-39	85.00	PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus]	[more]
gi\|700188445\|gb\|KGN43678.1\|	3.0e-39	85.00	hypothetical protein Csa_7G058530 [Cucumis sativus]	[more]
gi\|590688749\|ref\|XP_007043036.1\|	3.2e-20	60.00	Phosphatidylserine decarboxylase 2 isoform 1 [Theobroma cacao]	[more]
gi\|590688753\|ref\|XP_007043037.1\|	3.2e-20	60.00	Phosphatidylserine decarboxylase 2 isoform 2 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0006646	phosphatidylethanolamine biosynthetic process
biological_process	GO:0016540	protein autoprocessing
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004609	phosphatidylserine decarboxylase activity
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU64200	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009441	Cla009441.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU64200	WMU64200	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009441	Cla97C09G176070	Watermelon (97103) v2	wmwmbB047
Cla009441	Csa7G058530	Cucumber (Chinese Long) v2	cuwmB562
Cla009441	MELO3C018674	Melon (DHL92) v3.5.1	mewmB211
Cla009441	ClCG09G013430	Watermelon (Charleston Gray)	wcgwmB013
Cla009441	CSPI07G05200	Wild cucumber (PI 183967)	cpiwmB580
Cla009441	CmaCh19G002790	Cucurbita maxima (Rimu)	cmawmB482
Cla009441	CmoCh19G003060	Cucurbita moschata (Rifu)	cmowmB475
Cla009441	Lsi03G008040	Bottle gourd (USVL1VR-Ls)	lsiwmB237
Cla009441	CsGy7G004770	Cucumber (Gy14) v2	cgybwmB524
Cla009441	MELO3C018674.2	Melon (DHL92) v3.6.1	medwmB209
Cla009441	Carg24580	Silver-seed gourd	carwmB0645
Cla009441	CsaV3_7G006180	Cucumber (Chinese Long) v3	cucwmB586

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009441	Cucumber (Gy14) v1	cgywmB622
Cla009441	Cucurbita maxima (Rimu)	cmawmB081
Cla009441	Cucurbita pepo (Zucchini)	cpewmB247
Cla009441	Cucurbita pepo (Zucchini)	cpewmB635
Cla009441	Wax gourd	wgowmB248