Lsi03G008040 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G008040
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPhosphatidylserine decarboxylase, putative
Locationchr03 : 11905454 .. 11906134 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGATTGGATGCTTTAAAGAAATAGCCGCCAGCAGGCAGAGGCCACGATACAGCATAAAGGCAGACCAAAAAGTTTGAATTGACTGACATTCTTCTAATTCACCTTGAAAATAATCAAATCACTTAAAACAAATACCCCACAAAAAACAAAGCCAACAAAGTCAAATCGTCGTTATGAATTTCTCTGGCAACGCATTTTCCCATATTCCACAGCGCACCCCAATACCTGAAAACACAAACTCCCAATCCAATTCCTCCACTTCCTGACCGGAGCTGCTGCAGCAGAGCCAATAATGGGGAATGGCACTTCCAAGCTCGATTCCTCCTCTTCTTCTTCTTCCGATCCTGATGCTGAAGAATCGCGTGTCGCTCGATTCAAGAATCGTGTGCATCTTCGTCGATTTCTTCGTAGGCGCCGTAAAGGCACCAATGGCGGAGGTTTTCGTTCTCATACCAAACTTGGCTCTGCGGATGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGTAATTCTCTGCCTACCTTAACGCTTTGTTGCCTTGATTTGTCTCTCTGTTTGATGTGCTTTGCTATTGTTTGTTTGCAGGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGAGAACAGACTTTTCGAACGGGAATCTCTGATCAGTTAAGTGTC

mRNA sequence

AAAAGATTGGATGCTTTAAAGAAATAGCCGCCAGCAGGCAGAGGCCACGATACAGCATAAAGGCAGACCAAAAAGTTTGAATTGACTGACATTCTTCTAATTCACCTTGAAAATAATCAAATCACTTAAAACAAATACCCCACAAAAAACAAAGCCAACAAAGTCAAATCGTCGTTATGAATTTCTCTGGCAACGCATTTTCCCATATTCCACAGCGCACCCCAATACCTGAAAACACAAACTCCCAATCCAATTCCTCCACTTCCTGACCGGAGCTGCTGCAGCAGAGCCAATAATGGGGAATGGCACTTCCAAGCTCGATTCCTCCTCTTCTTCTTCTTCCGATCCTGATGCTGAAGAATCGCGTGTCGCTCGATTCAAGAATCGTGTGCATCTTCGTCGATTTCTTCGTAGGCGCCGTAAAGGCACCAATGGCGGAGGTTTTCGTTCTCATACCAAACTTGGCTCTGCGGATGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGAGAACAGACTTTTCGAACGGGAATCTCTGATCAGTTAAGTGTC

Coding sequence (CDS)

ATGGGGAATGGCACTTCCAAGCTCGATTCCTCCTCTTCTTCTTCTTCCGATCCTGATGCTGAAGAATCGCGTGTCGCTCGATTCAAGAATCGTGTGCATCTTCGTCGATTTCTTCGTAGGCGCCGTAAAGGCACCAATGGCGGAGGTTTTCGTTCTCATACCAAACTTGGCTCTGCGGATGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGAGAACAGACTTTTCGAACGGGAATCTCTGATCAGTTAAGTGTC

Protein sequence

MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQLSV
BLAST of Lsi03G008040 vs. Swiss-Prot
Match: PSD2_ARATH (Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-15
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1

Query: 1  MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSAD 60
          MGNG S+           +A+ESR +R ++++   R  RR  + +         +  SA+
Sbjct: 1  MGNGNSR-----------EAKESRRSRLRHKLQKFRIHRRHLRSSRNSAGMVIQRTVSAE 60

Query: 61 DFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
          DF+GIA+LTLI A M FKDKWLACVSFGEQTFRT ISD
Sbjct: 61 DFSGIALLTLIGAEMKFKDKWLACVSFGEQTFRTEISD 87

BLAST of Lsi03G008040 vs. Swiss-Prot
Match: PSD3_ARATH (Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-14
Identity = 53/101 (52.48%), Postives = 60/101 (59.41%), Query Frame = 1

Query: 1  MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRS---HTKLG 60
          MGNG S            + +ESR  R K R  ++ F  RRR    G G  S     +  
Sbjct: 1  MGNGNST-----------ETKESR--RSKMRKKIQNFRSRRRLSRPGSGSVSGLASQRSV 60

Query: 61 SADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
          SADDFAGIA+LTLI A M FKDKWLACVSFGEQTFR+ ISD
Sbjct: 61 SADDFAGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISD 88

BLAST of Lsi03G008040 vs. TrEMBL
Match: A0A0A0K2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058530 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.8e-39
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 1   MGNGTSKLDSSS--SSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGS 60
           MGNGTSK DSSS  SSSSDPDAEESR++RFKNRVHLRRFLRRRRK TNG  FRSHTKLGS
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRAFRSHTKLGS 60

Query: 61  ADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
           A+DFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  AEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

BLAST of Lsi03G008040 vs. TrEMBL
Match: A0A061E2K3_THECC (Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MGNGTSKLD-SSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSA 60
           MG+G+SK D SSSSSSSD D + SR++R K R+ L R    R +G++     S  KL +A
Sbjct: 1   MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS-----SQQKLNAA 60

Query: 61  DDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 100
           +DFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61  EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

BLAST of Lsi03G008040 vs. TrEMBL
Match: A0A061E1F1_THECC (Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MGNGTSKLD-SSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSA 60
           MG+G+SK D SSSSSSSD D + SR++R K R+ L R    R +G++     S  KL +A
Sbjct: 1   MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS-----SQQKLNAA 60

Query: 61  DDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 100
           +DFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61  EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

BLAST of Lsi03G008040 vs. TrEMBL
Match: A0A0D2PM37_GOSRA (Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium raimondii GN=PSD2 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.5e-20
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1

Query: 1   MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSAD 60
           MG+G+SK D SSSSS D DA+ SR++R K R  LRR   RRR+G++     SH KL +A+
Sbjct: 1   MGHGSSKEDGSSSSS-DEDAKPSRISRVKQR--LRRHRLRRRRGSDS----SHKKLFAAE 60

Query: 61  DFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 100
           DFAGIA LTLI A M FKDKWLACVSFGEQTFRT +S++
Sbjct: 61  DFAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSNE 92

BLAST of Lsi03G008040 vs. TrEMBL
Match: A0A0B0MD54_GOSAR (Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium arboreum GN=PSD2 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-20
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 1

Query: 1   MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSAD 60
           MG+G+SK D SSSSS D DA+ SR++R K+R+   R  RRRR  +      SH KL +A+
Sbjct: 1   MGHGSSKEDGSSSSS-DEDAKPSRISRVKHRLRRHRLRRRRRSDS------SHKKLFAAE 60

Query: 61  DFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 100
           DFAGIA LTLI A M FKDKWLACVSFGEQTFRT +S +
Sbjct: 61  DFAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSTE 92

BLAST of Lsi03G008040 vs. TAIR10
Match: AT5G57190.1 (AT5G57190.1 phosphatidylserine decarboxylase 2)

HSP 1 Score: 80.9 bits (198), Expect = 5.1e-16
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1

Query: 1  MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSAD 60
          MGNG S+           +A+ESR +R ++++   R  RR  + +         +  SA+
Sbjct: 1  MGNGNSR-----------EAKESRRSRLRHKLQKFRIHRRHLRSSRNSAGMVIQRTVSAE 60

Query: 61 DFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
          DF+GIA+LTLI A M FKDKWLACVSFGEQTFRT ISD
Sbjct: 61 DFSGIALLTLIGAEMKFKDKWLACVSFGEQTFRTEISD 87

BLAST of Lsi03G008040 vs. TAIR10
Match: AT4G25970.1 (AT4G25970.1 phosphatidylserine decarboxylase 3)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-15
Identity = 53/101 (52.48%), Postives = 60/101 (59.41%), Query Frame = 1

Query: 1  MGNGTSKLDSSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRS---HTKLG 60
          MGNG S            + +ESR  R K R  ++ F  RRR    G G  S     +  
Sbjct: 1  MGNGNST-----------ETKESR--RSKMRKKIQNFRSRRRLSRPGSGSVSGLASQRSV 60

Query: 61 SADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
          SADDFAGIA+LTLI A M FKDKWLACVSFGEQTFR+ ISD
Sbjct: 61 SADDFAGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISD 88

BLAST of Lsi03G008040 vs. NCBI nr
Match: gi|659110477|ref|XP_008455245.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-40
Identity = 90/101 (89.11%), Postives = 96/101 (95.05%), Query Frame = 1

Query: 1   MGNGTSKLD---SSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLG 60
           MGNGTSKLD   SSSSSSSDPDAEESR++RFKNRVHLRRFLRRRRK TNG GFRSHTKLG
Sbjct: 1   MGNGTSKLDSSSSSSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRGFRSHTKLG 60

Query: 61  SADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
           SA+DFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  SAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 101

BLAST of Lsi03G008040 vs. NCBI nr
Match: gi|778724254|ref|XP_011658767.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 6.9e-39
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 1   MGNGTSKLDSSS--SSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGS 60
           MGNGTSK DSSS  SSSSDPDAEESR++RFKNRVHLRRFLRRRRK TNG  FRSHTKLGS
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRAFRSHTKLGS 60

Query: 61  ADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
           A+DFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  AEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

BLAST of Lsi03G008040 vs. NCBI nr
Match: gi|700188445|gb|KGN43678.1| (hypothetical protein Csa_7G058530 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 6.9e-39
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 1   MGNGTSKLDSSS--SSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGS 60
           MGNGTSK DSSS  SSSSDPDAEESR++RFKNRVHLRRFLRRRRK TNG  FRSHTKLGS
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKVTNGRAFRSHTKLGS 60

Query: 61  ADDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISD 99
           A+DFAGIA+LTLIRARM+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  AEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

BLAST of Lsi03G008040 vs. NCBI nr
Match: gi|590688749|ref|XP_007043036.1| (Phosphatidylserine decarboxylase 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-21
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MGNGTSKLD-SSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSA 60
           MG+G+SK D SSSSSSSD D + SR++R K R+ L R    R +G++     S  KL +A
Sbjct: 1   MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS-----SQQKLNAA 60

Query: 61  DDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 100
           +DFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61  EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

BLAST of Lsi03G008040 vs. NCBI nr
Match: gi|590688753|ref|XP_007043037.1| (Phosphatidylserine decarboxylase 2 isoform 2 [Theobroma cacao])

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-21
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1

Query: 1   MGNGTSKLD-SSSSSSSDPDAEESRVARFKNRVHLRRFLRRRRKGTNGGGFRSHTKLGSA 60
           MG+G+SK D SSSSSSSD D + SR++R K R+ L R    R +G++     S  KL +A
Sbjct: 1   MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS-----SQQKLNAA 60

Query: 61  DDFAGIAVLTLIRARMNFKDKWLACVSFGEQTFRTGISDQ 100
           +DFAGIA+LTLI A M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61  EDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSD2_ARATH9.1e-1547.96Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=... [more]
PSD3_ARATH5.9e-1452.48Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=... [more]
Match NameE-valueIdentityDescription
A0A0A0K2G8_CUCSA4.8e-3988.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058530 PE=4 SV=1[more]
A0A061E2K3_THECC2.6e-2162.00Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=... [more]
A0A061E1F1_THECC2.6e-2162.00Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=... [more]
A0A0D2PM37_GOSRA6.5e-2062.63Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium raimondii GN=PSD2 PE=3... [more]
A0A0B0MD54_GOSAR8.5e-2060.61Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium arboreum GN=PSD2 PE=3 ... [more]
Match NameE-valueIdentityDescription
AT5G57190.15.1e-1647.96 phosphatidylserine decarboxylase 2[more]
AT4G25970.13.3e-1552.48 phosphatidylserine decarboxylase 3[more]
Match NameE-valueIdentityDescription
gi|659110477|ref|XP_008455245.1|2.8e-4089.11PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo][more]
gi|778724254|ref|XP_011658767.1|6.9e-3988.00PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus][more]
gi|700188445|gb|KGN43678.1|6.9e-3988.00hypothetical protein Csa_7G058530 [Cucumis sativus][more]
gi|590688749|ref|XP_007043036.1|3.8e-2162.00Phosphatidylserine decarboxylase 2 isoform 1 [Theobroma cacao][more]
gi|590688753|ref|XP_007043037.1|3.8e-2162.00Phosphatidylserine decarboxylase 2 isoform 2 [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006646 phosphatidylethanolamine biosynthetic process
biological_process GO:0016540 protein autoprocessing
biological_process GO:0006566 threonine metabolic process
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0008654 phospholipid biosynthetic process
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004609 phosphatidylserine decarboxylase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008040.1Lsi03G008040.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G008040CmoCh19G003060Cucurbita moschata (Rifu)cmolsiB466
Lsi03G008040Cla009441Watermelon (97103) v1lsiwmB237
The following gene(s) are paralogous to this gene:

None