WMU64200 (transcribed_cluster) Watermelon (97103) v1

NameWMU64200
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPhosphatidylserine decarboxylase proenzyme 2
LocationChr9 : 17652471 .. 17655586 (+)
Sequence length458
The following sequences are available for this feature:

transcribed_cluster sequence

AAAGCGCAACCCAATAGCTGAAAAGCGAAGCTCCAAGTCCAATTCCCCCACTTCCTGACCGGAGCTGGCTGCAGGCGCAGAGCCAACAATGGGGAGTGCCACTTCGAAGAATCGATTCCTCCTCTTCTTCTGATCCCGATGCTGAAGAATCGCGTATGGCTCGATTCAAGAATCGTGTACATCTTCGTCGCTTTCTTCGTAGGCGTCGTAAAAGCCACCAATGGCCGAGGCTTTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTAACTCTTATTCGTGCGCGAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCTTTTGGTAGAGCAGACTTTTCGGTACGGGAATCTCTGATCACACTAAAGAACCAGCTTGGAACTCTGAAAAGAAGCTTCTCTTAGGAAAAAGATGGACCTCATATTGCGAGAATCTC
BLAST of WMU64200 vs. TAIR10
Match: AT5G57190.1 (AT5G57190.1 phosphatidylserine decarboxylase 2)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 1

Query: 256 SVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLKNQLGTLKRSFS*EKD 315
           S EDF+GIA+LTLI A M FKDKWLACVSFG   F    S  T K  +   ++    EK+
Sbjct: 47  SAEDFSGIALLTLIGAEMKFKDKWLACVSFGEQTFRTEISDTTQK-PIWNSEKKLLLEKN 106

Query: 316 GPHIARI 375
           GP +AR+
Sbjct: 107 GPSLARV 112

Query: 376 435
           
Sbjct: 167 112

Query: 436 457
           
Sbjct: 227 112

BLAST of WMU64200 vs. TAIR10
Match: AT4G25970.1 (AT4G25970.1 phosphatidylserine decarboxylase 3)

HSP 1 Score: 63.9 bits (154), Expect = 9.6e-11
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 1

Query: 256 SVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLKNQLGTLKRSFS*EKD 315
           S +DFAGIA+LTLI A M FKDKWLACVSFG   F    S  T K  +   ++    EK+
Sbjct: 48  SADDFAGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISDSTEK-PIWNSEKKLLLEKN 107

Query: 316 GPHIARI 375
           GP +ARI
Sbjct: 108 GPSLARI 113

Query: 376 435
           
Sbjct: 168 113

Query: 436 457
           
Sbjct: 228 113

BLAST of WMU64200 vs. Swiss-Prot
Match: PSD2_ARATH (Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-10
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 1

Query: 256 SVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLKNQLGTLKRSFS*EKD 315
           S EDF+GIA+LTLI A M FKDKWLACVSFG   F    S  T K  +   ++    EK+
Sbjct: 47  SAEDFSGIALLTLIGAEMKFKDKWLACVSFGEQTFRTEISDTTQK-PIWNSEKKLLLEKN 106

Query: 316 GPHIARI 375
           GP +AR+
Sbjct: 107 GPSLARV 112

Query: 376 435
           
Sbjct: 167 112

Query: 436 457
           
Sbjct: 227 112

BLAST of WMU64200 vs. Swiss-Prot
Match: PSD3_ARATH (Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 1

Query: 256 SVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLKNQLGTLKRSFS*EKD 315
           S +DFAGIA+LTLI A M FKDKWLACVSFG   F    S  T K  +   ++    EK+
Sbjct: 48  SADDFAGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISDSTEK-PIWNSEKKLLLEKN 107

Query: 316 GPHIARI 375
           GP +ARI
Sbjct: 108 GPSLARI 113

Query: 376 435
           
Sbjct: 168 113

Query: 436 457
           
Sbjct: 228 113

BLAST of WMU64200 vs. NCBI nr
Match: gi|659110477|ref|XP_008455245.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1

Query: 211 KATNGRGFRSHTKLGSVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLK 270
           K TNGRGFRSHTKLGS EDFAGIA+LTLIRARM+FKD+WLACVSFG   F    S  T K
Sbjct: 46  KVTNGRGFRSHTKLGSAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISDHT-K 105

Query: 271 NQLGTLKRSFS*EKDGPHIARI 330
                 ++    EKDGPHIARI
Sbjct: 106 EPAWNSEKKLLLEKDGPHIARI 126

Query: 331 390
           
Sbjct: 166 126

Query: 391 450
           
Sbjct: 226 126

Query: 451 457
           
Sbjct: 286 126

BLAST of WMU64200 vs. NCBI nr
Match: gi|778724254|ref|XP_011658767.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 1

Query: 211 KATNGRGFRSHTKLGSVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLK 270
           K TNGR FRSHTKLGS EDFAGIA+LTLIRARM+FKD+WLACVSFG   F    S  T K
Sbjct: 45  KVTNGRAFRSHTKLGSAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISDHT-K 104

Query: 271 NQLGTLKRSFS*EKDGPHIARI 330
                 ++    EKDGPHIARI
Sbjct: 105 EPAWNSEKKLLLEKDGPHIARI 125

Query: 331 390
           
Sbjct: 165 125

Query: 391 450
           
Sbjct: 225 125

Query: 451 457
           
Sbjct: 285 125

BLAST of WMU64200 vs. NCBI nr
Match: gi|700188445|gb|KGN43678.1| (hypothetical protein Csa_7G058530 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 1

Query: 211 KATNGRGFRSHTKLGSVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLK 270
           K TNGR FRSHTKLGS EDFAGIA+LTLIRARM+FKD+WLACVSFG   F    S  T K
Sbjct: 45  KVTNGRAFRSHTKLGSAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISDHT-K 104

Query: 271 NQLGTLKRSFS*EKDGPHIARI 330
                 ++    EKDGPHIARI
Sbjct: 105 EPAWNSEKKLLLEKDGPHIARI 125

Query: 331 390
           
Sbjct: 165 125

Query: 391 450
           
Sbjct: 225 125

Query: 451 457
           
Sbjct: 285 125

BLAST of WMU64200 vs. NCBI nr
Match: gi|976916306|gb|KVI01829.1| (C2 calcium-dependent membrane targeting [Cynara cardunculus var. scolymus])

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1

Query: 235 RSHTKLGSVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLKNQLGTLKR 294
           R H+KL S+EDF GIA++TLI A M FKDKWLACVS G   F    S  T K    + K+
Sbjct: 50  RGHSKLSSLEDFTGIALVTLISAEMKFKDKWLACVSIGEQTFRTETSDQTNKPTWNSEKK 109

Query: 295 SFS*EKDGPHIARI 354
            F  E++GPHIA+I
Sbjct: 110 -FLLERNGPHIAKI 122

Query: 355 414
           
Sbjct: 170 122

Query: 415 457
           
Sbjct: 230 122

BLAST of WMU64200 vs. NCBI nr
Match: gi|645223856|ref|XP_008218832.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Prunus mume])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1

Query: 238 SHTKLGSVEDFAGIAVLTLIRARMNFKDKWLACVSFGRADFSVRESLITLKNQLGTLKRS 297
           SH KL + E+FAGIA+LTL+RA M FKDKWLACVSFG   F    S  T K    + K+ 
Sbjct: 43  SHGKLLNAENFAGIALLTLVRAEMKFKDKWLACVSFGEQTFRTNISDQTDKPVWNSEKKL 102

Query: 298 FS*EKDGPHIARI 357
              EK+GPH+ARI
Sbjct: 103 LL-EKNGPHVARI 114

Query: 358 417
           
Sbjct: 163 114

Query: 418 457
           
Sbjct: 223 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G57190.14.3e-1152.24 phosphatidylserine decarboxylase 2[more]
AT4G25970.19.6e-1153.73 phosphatidylserine decarboxylase 3[more]
Match NameE-valueIdentityDescription
PSD2_ARATH7.7e-1052.24Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=... [more]
PSD3_ARATH1.7e-0953.73Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=... [more]
Match NameE-valueIdentityDescription
gi|659110477|ref|XP_008455245.1|4.3e-2167.07PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo][more]
gi|778724254|ref|XP_011658767.1|2.1e-2065.85PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus][more]
gi|700188445|gb|KGN43678.1|2.1e-2065.85hypothetical protein Csa_7G058530 [Cucumis sativus][more]
gi|976916306|gb|KVI01829.1|4.8e-1254.05C2 calcium-dependent membrane targeting [Cynara cardunculus var. scolymus][more]
gi|645223856|ref|XP_008218832.1|1.1e-1156.16PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Prunus mume][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla009441Cla009441gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0105202S2_0105202EST