Cla004301 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004301
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Metal ion binding protein (AHRD V1 ***- B3H6D0_ARATH)
Location	Chr5 : 9714720 .. 9715019 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAACAGAAGGTGATTGTAACTGGATATGTAGAGGAAAGAAAAGTGTTGAAGGTGGTGAGAGGAACAGGGCGAAAAGCTGAGCTATGGCCGTTCCCTTACGACAACGAATACTACCCGTACGCATCACAATACTACGACGAATCAACATATGCATCAACATATAATTATTATAGGCATGGTTTCAATGAAGGCGTCCATGGATACTTTCCAGATCCTTTATATTCAACTGTTAGCGATAACACTGTTCATCTTTTTAGTGAAGATAATGTCCATGCTTATTGTAGTGTTATGTGA

mRNA sequence

ATGGACAAACAGAAGGTGATTGTAACTGGATATGTAGAGGAAAGAAAAGTGTTGAAGGTGGTGAGAGGAACAGGGCGAAAAGCTGAGCTATGGCCGTTCCCTTACGACAACGAATACTACCCGTACGCATCACAATACTACGACGAATCAACATATGCATCAACATATAATTATTATAGGCATGGTTTCAATGAAGGCGTCCATGGATACTTTCCAGATCCTTTATATTCAACTGTTAGCGATAACACTGTTCATCTTTTTAGTGAAGATAATGTCCATGCTTATTGTAGTGTTATGTGA

Coding sequence (CDS)

ATGGACAAACAGAAGGTGATTGTAACTGGATATGTAGAGGAAAGAAAAGTGTTGAAGGTGGTGAGAGGAACAGGGCGAAAAGCTGAGCTATGGCCGTTCCCTTACGACAACGAATACTACCCGTACGCATCACAATACTACGACGAATCAACATATGCATCAACATATAATTATTATAGGCATGGTTTCAATGAAGGCGTCCATGGATACTTTCCAGATCCTTTATATTCAACTGTTAGCGATAACACTGTTCATCTTTTTAGTGAAGATAATGTCCATGCTTATTGTAGTGTTATGTGA

Protein sequence

MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYRHGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM

Homology

[Close]

BLAST of Cla004301 vs. Swiss-Prot
Match: HIP21_ARATH (Heavy metal-associated isoprenylated plant protein 21 OS=Arabidopsis thaliana GN=HIPP21 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11
Identity = 38/98 (38.78%), Postives = 50/98 (51.02%), Query Frame = 1


Query: 3   KQKVIVTGYVEERKVLKVVRGTGRKAELWPF-PYDNEYYPYASQYYDESTYASTYNYYRH 62
           + ++ V G+V+  KVLK V+ TG+KAE WP+ P    YYP+A   YD+   A        
Sbjct: 62  QSRITVNGHVDPNKVLKRVKSTGKKAEFWPYIPQHMVYYPFAPGMYDKRAPAGHIRNPTQ 121

Query: 63  GFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
            F          P  +   +N V LFS+DNVHA CS+M
Sbjct: 122 SF----------PTANAPEENYVSLFSDDNVHAACSIM 149

[Close]

BLAST of Cla004301 vs. Swiss-Prot
Match: HIP20_ARATH (Heavy metal-associated isoprenylated plant protein 20 OS=Arabidopsis thaliana GN=HIPP20 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-08
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 5   KVIVTGYVEERKVLKVVRGTGRKAELWPF-PYDNEYYPYASQYYDESTYASTYNYYRHGF 64
           KV V+GYVE +KVLK +  TG+KAE+WP+ PY+   YPYA   YD+   A    Y R   
Sbjct: 66  KVTVSGYVEPKKVLKRIERTGKKAEIWPYVPYNMVAYPYAVGTYDKKAPA---GYVRKSE 125

Query: 65  NEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
              +       L     ++ + LFS++N +A C+VM
Sbjct: 126 QSQL-----QLLPGAPENHYISLFSDENPNA-CTVM 152

[Close]

BLAST of Cla004301 vs. Swiss-Prot
Match: HIP22_ARATH (Heavy metal-associated isoprenylated plant protein 22 OS=Arabidopsis thaliana GN=HIPP22 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-07
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 1


Query: 5   KVIVTGYVEERKVLKVVRGTG-RKAELWPF-PYDNEYYPYASQYYDESTYASTYNYYRHG 64
           KV V+GYV+ +KVLK V+ TG +KAELWP+ PY    YPYA+  YD+            G
Sbjct: 67  KVTVSGYVDPKKVLKTVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRA--------PPG 126

Query: 65  FNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           F          P   +  D  + LFS++N +A C+VM
Sbjct: 127 FVRKSEQAQAQP--GSTDDKLMSLFSDENPNA-CTVM 152

[Close]

BLAST of Cla004301 vs. Swiss-Prot
Match: HIP25_ARATH (Heavy metal-associated isoprenylated plant protein 25 OS=Arabidopsis thaliana GN=HIPP25 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.7e-06
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 4   QKVIVTGYVEERKVL-KVVRGTGRKAELWPF-PYDNEYYPYASQYYD 49
           QKV V GYVE  KV+ +++  TG++AEL+PF PYD   +PYAS  YD
Sbjct: 62  QKVTVVGYVEPNKVVARIIHRTGKRAELYPFVPYDVVAHPYASGVYD 108

[Close]

BLAST of Cla004301 vs. TrEMBL
Match: A0A0A0L9G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G231930 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.1e-51
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           M+KQKV VTGYVEERKVLK+VRGTGRKAELWPFPYD+EYYPYASQYYDESTYASTYNYYR
Sbjct: 50  MNKQKVTVTGYVEERKVLKMVRGTGRKAELWPFPYDDEYYPYASQYYDESTYASTYNYYR 109

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCS+M
Sbjct: 110 HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSIM 148

[Close]

BLAST of Cla004301 vs. TrEMBL
Match: A0A061EYX8_THECC (Heavy metal transport/detoxification superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_025236 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-44
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MDKQKV VTGY++ERKVLKVVR TGRKAELWPFPYD+EYYPYAS+Y DESTYAS+YNYYR
Sbjct: 1   MDKQKVTVTGYIDERKVLKVVRRTGRKAELWPFPYDSEYYPYASRYLDESTYASSYNYYR 60

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HG+NE VHGYFPD  YSTV D TVHLFS+DNVHAYC+VM
Sbjct: 61  HGYNESVHGYFPDQAYSTVPDQTVHLFSDDNVHAYCNVM 99

[Close]

BLAST of Cla004301 vs. TrEMBL
Match: A0A061EZK6_THECC (Heavy metal transport/detoxification superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_025236 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-44
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MDKQKV VTGY++ERKVLKVVR TGRKAELWPFPYD+EYYPYAS+Y DESTYAS+YNYYR
Sbjct: 50  MDKQKVTVTGYIDERKVLKVVRRTGRKAELWPFPYDSEYYPYASRYLDESTYASSYNYYR 109

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HG+NE VHGYFPD  YSTV D TVHLFS+DNVHAYC+VM
Sbjct: 110 HGYNESVHGYFPDQAYSTVPDQTVHLFSDDNVHAYCNVM 148

[Close]

BLAST of Cla004301 vs. TrEMBL
Match: W9SW68_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027991 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-44
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MDKQKV VTGYV++RKVLK+VR TGRKAE WPFPYD+EYYPYASQY DESTY S+YNYYR
Sbjct: 15  MDKQKVTVTGYVDKRKVLKMVRRTGRKAEFWPFPYDSEYYPYASQYLDESTYTSSYNYYR 74

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HG+NEGVHGYFPD  YSTV D TVHLFS+DNVHAYCS+M
Sbjct: 75  HGYNEGVHGYFPDQAYSTVDDQTVHLFSDDNVHAYCSIM 113

[Close]

BLAST of Cla004301 vs. TrEMBL
Match: M5VSE8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013392mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.3e-44
Identity = 82/99 (82.83%), Postives = 90/99 (90.91%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MDKQKV VTGYV++RKVLKVVR TGRKAE WPFPYD EYYPYASQY DESTY+S+YNYY 
Sbjct: 27  MDKQKVTVTGYVDQRKVLKVVRRTGRKAEFWPFPYDTEYYPYASQYLDESTYSSSYNYYM 86

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HG NE VHGYFPDPLYSTV+D TVHLFS+DNVHAYC++M
Sbjct: 87  HGSNESVHGYFPDPLYSTVADQTVHLFSDDNVHAYCTLM 125

[Close]

BLAST of Cla004301 vs. NCBI nr
Match: gi|659112036|ref|XP_008456034.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 5.3e-52
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           M+KQKV VTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR
Sbjct: 50  MNKQKVTVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 109

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCS+M
Sbjct: 110 HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSIM 148

[Close]

BLAST of Cla004301 vs. NCBI nr
Match: gi|449457031|ref|XP_004146252.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 4.5e-51
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           M+KQKV VTGYVEERKVLK+VRGTGRKAELWPFPYD+EYYPYASQYYDESTYASTYNYYR
Sbjct: 50  MNKQKVTVTGYVEERKVLKMVRGTGRKAELWPFPYDDEYYPYASQYYDESTYASTYNYYR 109

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCS+M
Sbjct: 110 HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSIM 148

[Close]

BLAST of Cla004301 vs. NCBI nr
Match: gi|645270862|ref|XP_008240650.1| (PREDICTED: copper transport protein ATX1 [Prunus mume])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MDKQKV VTGYV++RKVLKVVR TGRKAE WPFPYD EYYPYASQY DESTY+S+YNYY 
Sbjct: 51  MDKQKVTVTGYVDQRKVLKVVRRTGRKAEFWPFPYDTEYYPYASQYLDESTYSSSYNYYM 110

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HGFNE VHGYFPDPLYSTVSD TVHLFS+DNVHAYC++M
Sbjct: 111 HGFNESVHGYFPDPLYSTVSDQTVHLFSDDNVHAYCTLM 149

[Close]

BLAST of Cla004301 vs. NCBI nr
Match: gi|590638344|ref|XP_007029366.1| (Heavy metal transport/detoxification superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MDKQKV VTGY++ERKVLKVVR TGRKAELWPFPYD+EYYPYAS+Y DESTYAS+YNYYR
Sbjct: 1   MDKQKVTVTGYIDERKVLKVVRRTGRKAELWPFPYDSEYYPYASRYLDESTYASSYNYYR 60

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HG+NE VHGYFPD  YSTV D TVHLFS+DNVHAYC+VM
Sbjct: 61  HGYNESVHGYFPDQAYSTVPDQTVHLFSDDNVHAYCNVM 99

[Close]

BLAST of Cla004301 vs. NCBI nr
Match: gi|657951383|ref|XP_008352454.1| (PREDICTED: copper transport protein ATX1 [Malus domestica])

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MDKQKVIVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYR 60
           MD QKV VTGYV++RKVLKVVR TGR+AE WPFPYD+EYYPYASQY+DESTY+S+YNYY 
Sbjct: 51  MDTQKVTVTGYVDQRKVLKVVRRTGRRAEFWPFPYDSEYYPYASQYFDESTYSSSYNYYM 110

Query: 61  HGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSVM 100
           HG+NEGVHGYFPD LYSTV+DNTVHLFS+DNVHAYC++M
Sbjct: 111 HGYNEGVHGYFPDQLYSTVADNTVHLFSDDNVHAYCTLM 149

The following BLAST results are available for this feature:

BLAST of Cla004301 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HIP21_ARATH	2.0e-11	38.78	Heavy metal-associated isoprenylated plant protein 21 OS=Arabidopsis thaliana GN...	[more]
HIP20_ARATH	3.6e-08	39.58	Heavy metal-associated isoprenylated plant protein 20 OS=Arabidopsis thaliana GN...	[more]
HIP22_ARATH	2.3e-07	40.21	Heavy metal-associated isoprenylated plant protein 22 OS=Arabidopsis thaliana GN...	[more]
HIP25_ARATH	9.7e-06	55.32	Heavy metal-associated isoprenylated plant protein 25 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cla004301 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9G7_CUCSA	3.1e-51	94.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G231930 PE=4 SV=1	[more]
A0A061EYX8_THECC	1.7e-44	83.84	Heavy metal transport/detoxification superfamily protein isoform 2 OS=Theobroma ...	[more]
A0A061EZK6_THECC	1.7e-44	83.84	Heavy metal transport/detoxification superfamily protein isoform 1 OS=Theobroma ...	[more]
W9SW68_9ROSA	2.2e-44	82.83	Uncharacterized protein OS=Morus notabilis GN=L484_027991 PE=4 SV=1	[more]
M5VSE8_PRUPE	6.3e-44	82.83	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013392mg PE=4 SV=1	[more]

BLAST of Cla004301 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112036\|ref\|XP_008456034.1\|	5.3e-52	96.97	PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis melo]	[more]
gi\|449457031\|ref\|XP_004146252.1\|	4.5e-51	94.95	PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis sativu...	[more]
gi\|645270862\|ref\|XP_008240650.1\|	4.8e-45	84.85	PREDICTED: copper transport protein ATX1 [Prunus mume]	[more]
gi\|590638344\|ref\|XP_007029366.1\|	2.4e-44	83.84	Heavy metal transport/detoxification superfamily protein isoform 2 [Theobroma ca...	[more]
gi\|657951383\|ref\|XP_008352454.1\|	2.4e-44	81.82	PREDICTED: copper transport protein ATX1 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
biological_process	GO:0046916	cellular transition metal ion homeostasis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004301	Cla004301.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 1..32 score: 3.
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..98 score: 9.4
None	No IPR available	PANTHER	PTHR22814:SF85	METAL ION BINDING PROTEIN	coord: 1..98 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004301	Cla97C05G091740	Watermelon (97103) v2	wmwmbB206
Cla004301	Csa3G231930	Cucumber (Chinese Long) v2	cuwmB243
Cla004301	MELO3C019416	Melon (DHL92) v3.5.1	mewmB461
Cla004301	ClCG05G009390	Watermelon (Charleston Gray)	wcgwmB286
Cla004301	CSPI03G19320	Wild cucumber (PI 183967)	cpiwmB242
Cla004301	Cucsa.032650	Cucumber (Gy14) v1	cgywmB002
Cla004301	CmaCh16G003940	Cucurbita maxima (Rimu)	cmawmB317
Cla004301	CmoCh16G004270	Cucurbita moschata (Rifu)	cmowmB311
Cla004301	Lsi05G001490	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla004301	Cp4.1LG14g03870	Cucurbita pepo (Zucchini)	cpewmB228
Cla004301	CsGy3G019210	Cucumber (Gy14) v2	cgybwmB229
Cla004301	MELO3C019416.2	Melon (DHL92) v3.6.1	medwmB448
Cla004301	Carg11326	Silver-seed gourd	carwmB0655
Cla004301	CsaV3_3G019390	Cucumber (Chinese Long) v3	cucwmB252
Cla004301	Bhi01G001176	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004301	Cucurbita maxima (Rimu)	cmawmB703
Cla004301	Cucurbita moschata (Rifu)	cmowmB699
Cla004301	Cucurbita pepo (Zucchini)	cpewmB433
Cla004301	Silver-seed gourd	carwmB0048