Cla002480 (gene) Watermelon (97103) v1

NameCla002480
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibonuclease 2 (AHRD V1 **** B6TGK1_MAIZE); contains Interpro domain(s) IPR001568 Ribonuclease T2
LocationChr10 : 12827051 .. 12832081 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCTTTCTCCTTCAAAGCGGCGGCGACGGTGGTTTTTGTGGTTGTTGTTGCTATTGTTGTTAGGGTGCAGACGGCGGAGGGCATCACCGTCGGCAAGGATCAAAGGGAATTTGACTACTTTGTATTGGCTCTTCAATGGCCAGCAACGTTGTGCAGAAACATAAGCCTATGTTGCCCCACCAACGCTTGCTGCCGTGGGTGAGTTGGTTTTTTTTTTCATTTTTTTTTAAAAATAGTTTTGTTGTTGTTTAACTTTCTAATTTCTATTTTGATATTTTGATTTAGAGTTTATTTCAATTTAGTCTTTAAATTTTAAAATCTTACAATTTTAAGATTTTAGTTTTATTATAATTTGATCTATAGTTTTAAATTTATATTTTTAACTTTGATTTTAATAAATATTCACTTTTTATATCTTTAGTGTTAATATCTATTAATTAATTAAAATAGTTATGAAAGAAAATTTTAAATTTTATTTTAATAGTGATGAAAAATAGTAAAAATTAATTAATTGTAATTTTGTAATTCTTTTAATTCTTTTAAATTAATTAATATGCGTTAGCATTGAGACAAAAATGTATGTATTATATTTATTCAAAAATCAAGGTTAAAAGTATAAATCTTAAAAAAACTCAAATTTCAATAACAAAATTATAACATTTTAATATGTAAGGACTAAATCAAATTCAACTTAATGATTAAGTGTTTAATTTTGACACTTATAGGCCAAATGAAAACTAGACCCAAAATTTAGAAACGAAAAAGTTATTTTTTTTTCCTCTCCTTTTTCTTTTATAAGGTGTTTTGTGGTTTGTGATAAAAAATAAAAAAATGAGGAGTATGAGAGTACCTCTTCTCGTTTGTTCATATTTTATTTTATTCTTTTTTTCTTTAAATAACTGATCTTTTAATATTGACGAAATTGACATTATTGTTAAAAATTTATATATAAATACATGTTAAGTTATATCTATAATTGTGCAACTGACCTAATTATTCAACTACAATTTAGTGGCAAGTTGTGTTGTTTTTCTAAAAAGATAATTTTAAATTTTTTAATGCATATTTTTACGATAATTGACATGGGTAGGACTATAAATGAAAAGAAATATGTATACTTTTTGAGGTACTTAAAATTGTTCTTTCTGGTTACTTTGGAAAGTGCAATAATATAATAACTAATGTGCTAATTTCGATTTTTCTATTTCTCTCTAGACCAGACTCTCCCACTGAATTTACAATCCGTAAGTGTGAAAGAAAAAAAAAAAAAAGTGAATTCCCTTCGGCTTTGATTTTGGATTTCATTTGAATGTGATGATAAGAGTTCTATCATTGTTAGTCTTTTAATGTTATTAAAAATGGGGCAGATGGGCTGTGGCCTCAGTATGAAGGCAAAGGATGGCCTTCATGTTGTACTAATGCTACCTTCAATGAAGATGAGGTCTCTCTCTCTCTCAAATTTAATGGTTTCCAGAGTTAGTGATATTTGTGTACATTATAACATATATTTATGTTGGTGTATCTCAATTTAATTACACACGAAACTATAATATATAATTTAATTACACACGAAACTATAATATATAAAAGTTTACCCATTTGAGATTTATAAAGATTGATATAGTTTGTAATAGAGTAATTTTTAATAAAGTATATACCACCTTTTTTAAATATTTAAAAATAAACAAATGATATTTAAATTGATAAATATACTTTTTTATTCTTTTCGAATCAAGTTAGGACAACGTGTACACATTTTGATCCTTGAAATTTGGGTGTAGTTACGTAATAGTCTTGGAGTATTTAATTAAACTTGACATGCTCTCTCCTCATAGTTTTTGAGTTCGTTATTCTTGGATTAGATTCTAAAAAAAATGGTTAAAATGTCAATTTGAAAGTTCCTGAACGCAAATACAACTAGGCTAAACTTCAATGATTATAAATTTTTTTTCTTTCTTTTTTTTTTTGAAATATTAAAATTTAGGGATTGAGCATTATTTATTATAAATGCAGTACATCAATAATGAAATATTGTTATTGTTTTTATATATTATATCAATAGTTTTTCATCAATACATAACAGAAATATGTGGATGTATATCAAACACAGACTTAAAAAATTTAGAAGCAAAAAATGTAATTGAACATAAAATATTAAATATACCTCTAAAAGTATATTAAAAAGGATTAAATATACCTATTTATTTGAAAACAAGATATAAAAAAGGGGACATTATTGTAGGTAATGCTATATATATTCCATGATCTTAAAAATCATGCCTATCTTCTTCTATACCAATGGTATTTTCACTCCAACACCTTGTAGATTAGTTCCTTGTTTGAGGATATTCACAAGTATTGGCCAAGCTATCGGTGTGGTCTTGTAAGCAGCTGCTATAACAGAAAAGGATCATTTTGGGCTCACCAGGTTCAATTTTTCTACACAAAAATATAACTTTAATTTGGTCCTCTATTTGGATTTAGTTTTGAGTCCTTAACTTTCCAAACTTCCACAATTTAATTTCTAGTAATTTAAATAATAAGGATTTAGGGTAACTATCACCTTTTAAGCTATGTCACTTAAATATATTAATTTTATAGTTTTTAAATTTTTAATGTGCCAAAAAAACATCAAAACACGGCTGAAAATATTTATAAATAATAGCAAAATATCACAGTCTATCTGCAGTAAACAGCGATAGACTTAATCTATGTCTATCATGAAACAGATAGACACATATAGTAGTCAACCGCAGTGTATTGCAGATAAACTTGATGTATTTGTAAACATTTTGGTTCATTTTCTTATTTTTCACAATATCCCAATATATATATAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTTGAACATCTAATTTTAACACTTGTATAAGGTTGAAGGGTCAATTTTTACAATTCAAAATTTGATGGTATAATTACAACTATCACCATACTTTAGAGGTGATTTTTAATTTGCAATTTGTCTAAAAAAAAATGCAAAATTATCAATCAATTTCCTGTTAGCTACATTAGTGGAAATTAATGACAGTGACTAGAAAAGAGATTGTCTAATAAACTTCATGAGTAAAAATATCGGATTTAAAAACTTAAAGAATCCAAATCTTAATTAAATCAAATTTCAAGGACTAAAAATTTATTTTTTTTTAGTGATTGTCTATAGTTCGTTCCTTAGCTTATTATTAAAAATTCGAGACTGTATCCTAACATTCTCTCTTTTTCCCTTATTCATGATGGGTATTTGACATGTTACACCATTATATTGCTGCAGTATGGTATGTTTTCTATTTCCTTTTTCTTTTTCACCTCTTCCATCTCTCATGTTTTTCTTCTTTCTTCATTCTTATCTCACCCATGACTAAAGCTATTTTCTTACATTCTTAACCAATGGAAAACAGAAATATGTTTTGAAAACATTTAGAAACATATTTTATAAAAGAATATTATCTTTTAATTATTAAATACCATTATATTAGGATTAGATTATACATATTTAAGTAATTTTTAATTTCCCTTTTCTTAACTTTTTGTTTAGAGAAACATGGAACCTGTGGATCTCCTCTAATTCTACAAGAATATGATTACTTCTTGACAACTCTCACCCTTTTCTTCAAGTATAATGTCACTGTAAGCAAGCTTTTATAAACCCCTCTCTCTCTCCGGTTCAATTCTCAAATTCTCACACTCTAATGTGAGATTTTCAACATGTCTTTCAATATTGTGTCTCTTTGAGTTTACTATTCTTGAATTGAATCCTAATATTCTTCTAGACCGAGGACCTGTTGGATTTCATAAGCTATGATACCATATTAGATAAACAAGAGTTTCATTTCAAACCCAATTAACGTAATTTTATGTATCTTTTAAAAATTGCGAGGTTCTTATTTTTGAGGTTGACAATTAAAAAAACAAAAAACTATTGTAAGATATTAATACAACGTGGCAGATAGTTTTGAATCATTAAATGTAGGAGAGAAACCCAGTGGAAAATTACTTTCAACATATATCTAAACCCATATTAGTATTAGGTTTAAAAAAATCACTAGTAGAAGATTATGATTTGTACATATTTTAAATTAGTAAACTTTATTTTTAACACCTTTTATATAAACCATTTTGATTTTTATGATGAGATCACACCATTAAAGATTTTTATTTATTTATTTATTTATTTTTTAACATTTTTGAGTTCATCATAGATTGCACCAAAGATGATTTATAAGATGAGTTACAAGAAGATGGGTGCACTCAAGATTTTTTTTTTTTTTTAAAGAAAATACTTAAGTATTGCCAGAGTGTACCTATACCTTTGTGCATAGCTTAGTGCTATTCCAAAAAAAAAAAAAAAAATGCTATGTCACAATCTTTAAATTTTTTTTATAAAAAAAATTCTTTATGTGTAAAGTAAAGGGGAGCATGGAATTAGGTGGAATTAGATGCAGCCGTGTTGACTGGACTCCACCTGTCTTTGTGCAGTCCAAATAGCTATTTAGTAAAATATTGTCACATGACAAATTTTTTTTAATTATATTATTAATAATTTTTTGTGTATAAAAAGAAGGAGAACATAGAATTAGGCGCACTAATTCTCAAACCTAAAATCAAACTTATAAAAGTAAGTTTACTTAGAGTGAGGGGTAGGAGTTAGATCAATATTGTTGTATACGTTAGCTGTACTAAATATTTGATCCCATATATATAATAAATATTGAATTTTTTTTTTTTTTTTTTATTTTGTGGCATTATGGATTTTGAAGCGTTAAAACTGATCAGGAAGCTTTGGAGAATGCTGAAATTGTAGCTTCGGATACCAAAAAGTATCGTATTCAAGATGTTCTAAATGCAATTCACTCCGCTTTCAAAGCAAATCCAAAGCTTGCATGCGCTAAAAAAGGGATTATTAAAGAACTTCGTCTATGCTTTGATAAACAATTGAAGGTATATATATATTTCTTTCTTCATAAATTCATACCCAAACAAAAAAATTATCATTTAAAAATTTTCTAA

mRNA sequence

ATGACTTCTTTCTCCTTCAAAGCGGCGGCGACGGTGGTTTTTGTGGTTGTTGTTGCTATTGTTGTTAGGGTGCAGACGGCGGAGGGCATCACCGTCGGCAAGGATCAAAGGGAATTTGACTACTTTGTATTGGCTCTTCAATGGCCAGCAACGTTGTGCAGAAACATAAGCCTATGTTGCCCCACCAACGCTTGCTGCCGTGGACCAGACTCTCCCACTGAATTTACAATCCATGGGCTGTGGCCTCAGTATGAAGGCAAAGGATGGCCTTCATGTTGTACTAATGCTACCTTCAATGAAGATGAGATTAGTTCCTTGTTTGAGGATATTCACAAGTATTGGCCAAGCTATCGGTGTGGTCTTGTAAGCAGCTGCTATAACAGAAAAGGATCATTTTGGGCTCACCAGGTTCAATTTTTCTACACAAAAAAGAAACATGGAACCTGTGGATCTCCTCTAATTCTACAAGAATATGATTACTTCTTGACAACTCTCACCCTTTTCTTCAAGTATAATGTCACTGAAGCTTTGGAGAATGCTGAAATTGTAGCTTCGGATACCAAAAAGTATCGTATTCAAGATGTTCTAAATGCAATTCACTCCGCTTTCAAAGCAAATCCAAAGCTTGCATGCGCTAAAAAAGGGATTATTAAAGAACTTCGTCTATGCTTTGATAAACAATTGAAGGTATATATATATTTCTTTCTTCATAAATTCATACCCAAACAAAAAAATTATCATTTAAAAATTTTCTAA

Coding sequence (CDS)

ATGACTTCTTTCTCCTTCAAAGCGGCGGCGACGGTGGTTTTTGTGGTTGTTGTTGCTATTGTTGTTAGGGTGCAGACGGCGGAGGGCATCACCGTCGGCAAGGATCAAAGGGAATTTGACTACTTTGTATTGGCTCTTCAATGGCCAGCAACGTTGTGCAGAAACATAAGCCTATGTTGCCCCACCAACGCTTGCTGCCGTGGACCAGACTCTCCCACTGAATTTACAATCCATGGGCTGTGGCCTCAGTATGAAGGCAAAGGATGGCCTTCATGTTGTACTAATGCTACCTTCAATGAAGATGAGATTAGTTCCTTGTTTGAGGATATTCACAAGTATTGGCCAAGCTATCGGTGTGGTCTTGTAAGCAGCTGCTATAACAGAAAAGGATCATTTTGGGCTCACCAGGTTCAATTTTTCTACACAAAAAAGAAACATGGAACCTGTGGATCTCCTCTAATTCTACAAGAATATGATTACTTCTTGACAACTCTCACCCTTTTCTTCAAGTATAATGTCACTGAAGCTTTGGAGAATGCTGAAATTGTAGCTTCGGATACCAAAAAGTATCGTATTCAAGATGTTCTAAATGCAATTCACTCCGCTTTCAAAGCAAATCCAAAGCTTGCATGCGCTAAAAAAGGGATTATTAAAGAACTTCGTCTATGCTTTGATAAACAATTGAAGGTATATATATATTTCTTTCTTCATAAATTCATACCCAAACAAAAAAATTATCATTTAAAAATTTTCTAA

Protein sequence

MTSFSFKAAATVVFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDSPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRIQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLKVYIYFFLHKFIPKQKNYHLKIF
BLAST of Cla002480 vs. Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-60
Identity = 107/221 (48.42%), Postives = 140/221 (63.35%), Query Frame = 1

Query: 9   AATVVFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRG 68
           A+ +  +++VA +      + I + + QREFDYF L+LQWP T CR    CC  NACCRG
Sbjct: 2   ASRLCLLLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRG 61

Query: 69  PDSPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNR 128
            D+PT+FTIHGLWP Y    WPSCC  + F E EIS+L + + KYWPS  CG  SSC   
Sbjct: 62  SDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGG 121

Query: 129 KGSFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTK 188
           KGSFW H+ +      KHGTC SP+   EY+YFLTTL L+ K+NVT+ L  A  VAS+++
Sbjct: 122 KGSFWGHEWE------KHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSE 181

Query: 189 KYRIQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLK 230
           KY +  ++ AI +AF   P++ C K+  I E+R+CF K  K
Sbjct: 182 KYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFK 215

BLAST of Cla002480 vs. Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.3e-21
Identity = 64/201 (31.84%), Postives = 91/201 (45.27%), Query Frame = 1

Query: 37  REFDYFVLALQWPATLCRNISLCCPTNACCRGPDSPTEFTIHGLWPQYEGKGWP-SCCTN 96
           ++FD+F   LQWP   C +   CC             +F IHGLWP Y+  GWP +C  +
Sbjct: 20  QDFDFFYFVLQWPGAYCDSRHSCCYPQT----GKPAADFGIHGLWPNYKTGGWPQNCNPD 79

Query: 97  ATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSFWAHQVQFFYTKKKHGTCGSPLIL 156
           + F++  +S L  D+ + WP+  C       N    FW H+ +      KHGTC     L
Sbjct: 80  SRFDDLRVSDLMSDLQREWPTLSCP-----SNDGMKFWTHEWE------KHGTCAES-EL 139

Query: 157 QEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRIQDVLNAIHSAFKANPKLACAK-- 216
            ++DYF   L L  K N+  AL NA I   D K Y ++D+ N I       P + C K  
Sbjct: 140 DQHDYFEAGLKLKQKANLLHALTNAGI-KPDDKFYEMKDIENTIKQVVGFAPGIECNKDS 199

Query: 217 --KGIIKELRLCFDKQLKVYI 233
                + ++ LC D     +I
Sbjct: 200 SHNSQLYQIYLCVDTSASKFI 203

BLAST of Cla002480 vs. Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 8.7e-19
Identity = 58/177 (32.77%), Postives = 80/177 (45.20%), Query Frame = 1

Query: 37  REFDYFVLALQWPATLCRNISLCC-PTNACCRGPDSPTEFTIHGLWPQYEGKGWP-SCCT 96
           ++FD+F    QWPA+ C     CC PT      PD   +F+IHGLWP Y+   WP +C  
Sbjct: 26  QDFDFFYFVQQWPASYCDTRRSCCYPTTG---KPDE--DFSIHGLWPNYKDGKWPQNCDR 85

Query: 97  NATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSFWAHQVQFFYTKKKHGTCGSPLI 156
            ++ +E E S L   + K WPS  C            FW+H+        KHGTC +   
Sbjct: 86  ESSLDESEFSDLISTMEKNWPSLACPSSDGL-----KFWSHE------WLKHGTCSA--- 145

Query: 157 LQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRIQDVLNAIHSAFKANPKLAC 212
           L ++ YF T L    K N+ + L NA I   +   Y ++ +  AI       P + C
Sbjct: 146 LNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIEC 183

BLAST of Cla002480 vs. Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.7e-19
Identity = 60/201 (29.85%), Postives = 92/201 (45.77%), Query Frame = 1

Query: 31  TVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDSPTEFTIHGLWPQYEGKGWP 90
           +      +FD+F    QWP + C     CC  N+         +F IHGLWP Y+   +P
Sbjct: 22  SASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNS----GKPAADFGIHGLWPNYKDGTYP 81

Query: 91  S-CCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSFWAHQVQFFYTKKKHGTC 150
           S C  +  F+   IS L   + K WP+  C   S       +FW H+ +      KHGTC
Sbjct: 82  SNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSG-----EAFWEHEWE------KHGTC 141

Query: 151 GSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRIQDVLNAIHSAFKANPKL 210
            S  ++ +++YF T L L  K N+  AL  A I   D K Y ++ + ++I  +    P +
Sbjct: 142 -SESVIDQHEYFQTALNLKQKTNLLGALTKAGI-NPDGKSYSLESIRDSIKESIGFTPWV 201

Query: 211 ACAKKGI----IKELRLCFDK 227
            C + G     + ++ LC D+
Sbjct: 202 ECNRDGSGNSQLYQVYLCVDR 205

BLAST of Cla002480 vs. Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-17
Identity = 59/204 (28.92%), Postives = 90/204 (44.12%), Query Frame = 1

Query: 37  REFDYFVLALQWPATLCRNISLCCPTNACCRGPDSPTEFTIHGLWPQY--EGKGWPSCCT 96
           ++++YF  A QWP  +C         +  C  PDS   + IHGLWP    E KG  +C  
Sbjct: 1   KDWNYFTFAQQWPIAVCAE-------HKSCFIPDSVVGWGIHGLWPSSDTESKGPENCNG 60

Query: 97  NATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSFWAHQVQFFYTKKKHGTCGS--P 156
           +  F+ + +  L  ++ KYWP+           +  SFW H+        KHGTC +  P
Sbjct: 61  SWPFDINNVMPLVPELKKYWPNLYPD------TKANSFWEHEWS------KHGTCATSLP 120

Query: 157 LILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRIQDVLNAIHSAFKANPKLAC- 216
               E  YF   L L  KYN++  L N  I+ S T  Y I +   A+      +  + C 
Sbjct: 121 ATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRELGVDAVIECV 180

Query: 217 -----AKKGIIKELRLCFDKQLKV 231
                 KK ++ E+ +C  K+ ++
Sbjct: 181 YDKEKTKKQLLYEISICLTKEFEL 185

BLAST of Cla002480 vs. TrEMBL
Match: A0A0A0KVR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109040 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-97
Identity = 169/218 (77.52%), Postives = 187/218 (85.78%), Query Frame = 1

Query: 13  VFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDSP 72
           V VVV+ IVV V    G TVGK+QREFDYF+LALQWP+T C N+++CC TNACCR   SP
Sbjct: 12  VVVVVIGIVVVVVDGGGFTVGKEQREFDYFILALQWPSTSCTNVTVCCTTNACCRRAVSP 71

Query: 73  TEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSF 132
           TEFTIHGLWP+YEGKGWPSCCTN TF+E +I SLFED+ KYWP+YRCGLVSSC NRKGSF
Sbjct: 72  TEFTIHGLWPKYEGKGWPSCCTNETFDETQIRSLFEDVDKYWPTYRCGLVSSCDNRKGSF 131

Query: 133 WAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRI 192
           WAHQ +      KHGTCGSP+ILQEYDYFLTTLTLF+KYNVTEALENAEIVASDTKKY I
Sbjct: 132 WAHQYE------KHGTCGSPVILQEYDYFLTTLTLFYKYNVTEALENAEIVASDTKKYPI 191

Query: 193 QDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLKV 231
           QDVLNA+HSAFK NPKLAC KKGIIKE+ LCFDKQ K+
Sbjct: 192 QDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKL 223

BLAST of Cla002480 vs. TrEMBL
Match: A0A0A0L0P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109540 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 142/234 (60.68%), Postives = 176/234 (75.21%), Query Frame = 1

Query: 1   MTSFSFKAAATVVFVVVVAI----VVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNI 60
           M S S KA A +VFVVVV +    VV   +AE  +   +QREFDYFVLALQWP + C+N 
Sbjct: 1   MASLSIKAKA-MVFVVVVLLQLLTVVFGFSAEAPS-SSEQREFDYFVLALQWPGSSCKNP 60

Query: 61  SLCCPTNACCRGPDSPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPS 120
             CCP+NACCRG +SPTEFTIHGLWPQY  KGWPSCCT+A+FNE+EI+ L EDI KYWP+
Sbjct: 61  GKCCPSNACCRGAESPTEFTIHGLWPQYNEKGWPSCCTDASFNENEINILTEDIQKYWPT 120

Query: 121 YRCGLVSSCYNRKGSFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEA 180
           YRCG  S+C+  KGSFWAH+ +      KHGTC +P+I+ EYDYFLTT+T+F KYNVT+ 
Sbjct: 121 YRCGTTSTCHQTKGSFWAHEYE------KHGTCAAPVIVGEYDYFLTTITIFSKYNVTKV 180

Query: 181 LENAEIVASDTKKYRIQDVLNAIHSAF-KANPKLACAKKGIIKELRLCFDKQLK 230
           L +A  VAS+T+KY I+DV+ AI + F  A PK++CAKKG +KEL LCFDK  +
Sbjct: 181 LSDAGFVASNTEKYPIEDVVAAIKNEFNNATPKISCAKKGAVKELWLCFDKSFE 226

BLAST of Cla002480 vs. TrEMBL
Match: M5W6T6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009963mg PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-63
Identity = 117/228 (51.32%), Postives = 152/228 (66.67%), Query Frame = 1

Query: 3   SFSFKAAATVVFVVVVAIVVRVQTAEGITVG-KDQREFDYFVLALQWPATLCRNISLCCP 62
           S  F +A  ++ V  + ++   QT  GI +G + QREFDYF LALQWP T C++   CC 
Sbjct: 5   SAQFASAVALIVVASLCLIEANQTGIGIEIGSRKQREFDYFNLALQWPGTFCQHTRHCCS 64

Query: 63  TNACCRGPDSPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGL 122
           +NACCRG +SPT FTIHGLWP Y    WP+CCT  +F+E EIS+L + + KYWPS  CG 
Sbjct: 65  SNACCRGANSPTVFTIHGLWPDYNDGTWPACCTQKSFDEKEISTLHDALEKYWPSLSCGR 124

Query: 123 VSSCYNRKGSFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAE 182
            SSC+  KGSFW H+ +      KHGTC SP+   EY YFLTTL ++FKYNVT+ L  A 
Sbjct: 125 PSSCHGGKGSFWGHEWE------KHGTCSSPVARDEYSYFLTTLNVYFKYNVTKVLNEAG 184

Query: 183 IVASDTKKYRIQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLK 230
            V S+T+KY +  +++AI +AF+  PKL C KKG ++EL LCF K  K
Sbjct: 185 YVPSNTEKYPLGGIVSAIQNAFRTTPKLLC-KKGALEELHLCFYKDFK 225

BLAST of Cla002480 vs. TrEMBL
Match: A0A162A2W5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018604 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.2e-61
Identity = 108/221 (48.87%), Postives = 152/221 (68.78%), Query Frame = 1

Query: 9   AATVVFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRG 68
           +A+++ V++ +  +    A G  + K+QREFDYF L+LQWP T+CRN   CC +N CCRG
Sbjct: 11  SASLLIVLIGSFFIEPINAGGFNIVKEQREFDYFKLSLQWPGTVCRNTRHCCASNGCCRG 70

Query: 69  PDSPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNR 128
            +SPTEFTIHGLWP Y    WP+CCT + F+  EIS+L + + KYWPSY C   S+C  +
Sbjct: 71  SNSPTEFTIHGLWPDYNDGTWPACCTKSGFDVKEISTLKDALEKYWPSYSCSKASTCSGK 130

Query: 129 KGSFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTK 188
           KG FWAH+ +      KHGTC SP++  EY YF+TTL ++FK+NVTE L  A  V S+++
Sbjct: 131 KGLFWAHEWE------KHGTCSSPVVKDEYSYFITTLNVYFKFNVTEVLYEAGYVPSNSE 190

Query: 189 KYRIQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLK 230
           KY +  +++AI +AF A P++ C+ +G ++ELRLCF K  K
Sbjct: 191 KYPMGGIISAIQNAFHATPEITCS-QGAVEELRLCFYKDFK 224

BLAST of Cla002480 vs. TrEMBL
Match: D0VUS4_CITMA (S-like RNase OS=Citrus maxima PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.2e-61
Identity = 113/219 (51.60%), Postives = 145/219 (66.21%), Query Frame = 1

Query: 11  TVVFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPD 70
           T  F  + AI +R    + +    +QREFDYF  ALQWP T C+N   CCP+N CCRG +
Sbjct: 19  TASFCQLKAIGIREAVDDAVG---EQREFDYFNFALQWPGTQCKNTRHCCPSNGCCRGSN 78

Query: 71  SPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKG 130
           +PTEFTIHGLWP Y    WPSCC  + F+E EIS+L + + KYWPSYRCG  S+CY+ +G
Sbjct: 79  APTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDALEKYWPSYRCGSTSTCYSGEG 138

Query: 131 SFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKY 190
            FWAH+V+      KHGTC  P++  EY YF TTL L+FKYNVT  L  A  + S+T+KY
Sbjct: 139 LFWAHEVE------KHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKY 198

Query: 191 RIQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLK 230
            +  +++AI +AF A PKL C+K   + ELRLCF K  K
Sbjct: 199 PLGGIVSAIQNAFHATPKLDCSKDA-VNELRLCFYKDFK 227

BLAST of Cla002480 vs. NCBI nr
Match: gi|778691966|ref|XP_011653385.1| (PREDICTED: ribonuclease 2-like [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 1.6e-97
Identity = 169/218 (77.52%), Postives = 187/218 (85.78%), Query Frame = 1

Query: 13  VFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDSP 72
           V VVV+ IVV V    G TVGK+QREFDYF+LALQWP+T C N+++CC TNACCR   SP
Sbjct: 12  VVVVVIGIVVVVVDGGGFTVGKEQREFDYFILALQWPSTSCTNVTVCCTTNACCRRAVSP 71

Query: 73  TEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSF 132
           TEFTIHGLWP+YEGKGWPSCCTN TF+E +I SLFED+ KYWP+YRCGLVSSC NRKGSF
Sbjct: 72  TEFTIHGLWPKYEGKGWPSCCTNETFDETQIRSLFEDVDKYWPTYRCGLVSSCDNRKGSF 131

Query: 133 WAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRI 192
           WAHQ +      KHGTCGSP+ILQEYDYFLTTLTLF+KYNVTEALENAEIVASDTKKY I
Sbjct: 132 WAHQYE------KHGTCGSPVILQEYDYFLTTLTLFYKYNVTEALENAEIVASDTKKYPI 191

Query: 193 QDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLKV 231
           QDVLNA+HSAFK NPKLAC KKGIIKE+ LCFDKQ K+
Sbjct: 192 QDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKL 223

BLAST of Cla002480 vs. NCBI nr
Match: gi|700198557|gb|KGN53715.1| (hypothetical protein Csa_4G109040 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 1.6e-97
Identity = 169/218 (77.52%), Postives = 187/218 (85.78%), Query Frame = 1

Query: 13  VFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDSP 72
           V VVV+ IVV V    G TVGK+QREFDYF+LALQWP+T C N+++CC TNACCR   SP
Sbjct: 12  VVVVVIGIVVVVVDGGGFTVGKEQREFDYFILALQWPSTSCTNVTVCCTTNACCRRAVSP 71

Query: 73  TEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGSF 132
           TEFTIHGLWP+YEGKGWPSCCTN TF+E +I SLFED+ KYWP+YRCGLVSSC NRKGSF
Sbjct: 72  TEFTIHGLWPKYEGKGWPSCCTNETFDETQIRSLFEDVDKYWPTYRCGLVSSCDNRKGSF 131

Query: 133 WAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYRI 192
           WAHQ +      KHGTCGSP+ILQEYDYFLTTLTLF+KYNVTEALENAEIVASDTKKY I
Sbjct: 132 WAHQYE------KHGTCGSPVILQEYDYFLTTLTLFYKYNVTEALENAEIVASDTKKYPI 191

Query: 193 QDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLKV 231
           QDVLNA+HSAFK NPKLAC KKGIIKE+ LCFDKQ K+
Sbjct: 192 QDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKL 223

BLAST of Cla002480 vs. NCBI nr
Match: gi|659125792|ref|XP_008462862.1| (PREDICTED: ribonuclease 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 359.8 bits (922), Expect = 4.0e-96
Identity = 171/219 (78.08%), Postives = 188/219 (85.84%), Query Frame = 1

Query: 12  VVFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDS 71
           VVFVVVV I + V    G TVGK+QREFDYFVLALQWP+TLCRN++ CCPTNAC R   S
Sbjct: 11  VVFVVVVVIGIIVD-GWGFTVGKEQREFDYFVLALQWPSTLCRNVTECCPTNACYRRAVS 70

Query: 72  PTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGS 131
            T+FTIHGLWP+YEGKGWPSCCTNATFN+ +I SLFED+ KYWP+YRCGLVSSC NRKGS
Sbjct: 71  ATKFTIHGLWPKYEGKGWPSCCTNATFNQTQIGSLFEDVDKYWPTYRCGLVSSCDNRKGS 130

Query: 132 FWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYR 191
           FWAHQ +      KHGTCGSP+ILQEYDYFLTTLTLFFKYNVTEALENAEIVASD +KY 
Sbjct: 131 FWAHQYE------KHGTCGSPVILQEYDYFLTTLTLFFKYNVTEALENAEIVASDIRKYP 190

Query: 192 IQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLKV 231
           IQDVLNA+HSAFKANPKLAC K GIIKE+ LCFDKQ K+
Sbjct: 191 IQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKL 222

BLAST of Cla002480 vs. NCBI nr
Match: gi|659125796|ref|XP_008462864.1| (PREDICTED: ribonuclease 2-like isoform X3 [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 5.2e-96
Identity = 171/218 (78.44%), Postives = 187/218 (85.78%), Query Frame = 1

Query: 12  VVFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLCCPTNACCRGPDS 71
           VVFVVVV I + V    G TVGK+QREFDYFVLALQWP+TLCRN++ CCPTNAC R   S
Sbjct: 11  VVFVVVVVIGIIVD-GWGFTVGKEQREFDYFVLALQWPSTLCRNVTECCPTNACYRRAVS 70

Query: 72  PTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRCGLVSSCYNRKGS 131
            T+FTIHGLWP+YEGKGWPSCCTNATFN+ +I SLFED+ KYWP+YRCGLVSSC NRKGS
Sbjct: 71  ATKFTIHGLWPKYEGKGWPSCCTNATFNQTQIGSLFEDVDKYWPTYRCGLVSSCDNRKGS 130

Query: 132 FWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALENAEIVASDTKKYR 191
           FWAHQ +      KHGTCGSP+ILQEYDYFLTTLTLFFKYNVTEALENAEIVASD +KY 
Sbjct: 131 FWAHQYE------KHGTCGSPVILQEYDYFLTTLTLFFKYNVTEALENAEIVASDIRKYP 190

Query: 192 IQDVLNAIHSAFKANPKLACAKKGIIKELRLCFDKQLK 230
           IQDVLNA+HSAFKANPKLAC K GIIKE+ LCFDKQ K
Sbjct: 191 IQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFK 221

BLAST of Cla002480 vs. NCBI nr
Match: gi|659125801|ref|XP_008462866.1| (PREDICTED: ribonuclease 2-like [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 3.5e-76
Identity = 137/231 (59.31%), Postives = 168/231 (72.73%), Query Frame = 1

Query: 1   MTSFSFKAAATV-VFVVVVAIVVRVQTAEGITVGKDQREFDYFVLALQWPATLCRNISLC 60
           M SFS K    V +F++V  + V    +     G +QREFDYFVLALQWPAT C+N   C
Sbjct: 1   MASFSIKGKPMVFLFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKNAGKC 60

Query: 61  CPTNACCRGPDSPTEFTIHGLWPQYEGKGWPSCCTNATFNEDEISSLFEDIHKYWPSYRC 120
           CP+NACCRG DSPTEFTIHGLWPQY  KGWPSCCT+A+FNE+EI  L EDI KYWP+YRC
Sbjct: 61  CPSNACCRGADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWPTYRC 120

Query: 121 GLVSSCYNRKGSFWAHQVQFFYTKKKHGTCGSPLILQEYDYFLTTLTLFFKYNVTEALEN 180
           G  S+C+  KGSFWAH+ +      KHGTC +P+++ EYDYFLT LT+F KYNVT+ L  
Sbjct: 121 GTSSTCHRTKGSFWAHEYE------KHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSE 180

Query: 181 AEIVASDTKKYRIQDVLNAIHSAF-KANPKLACAKKGIIKELRLCFDKQLK 230
              VAS+T+KY I+DV+ AI + F  A PK+ CAKKG++KEL LCFDK  +
Sbjct: 181 GGFVASNTEKYPIEDVIAAIKNKFYNATPKITCAKKGVVKELWLCFDKSFE 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RNS2_ARATH1.6e-6048.42Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1[more]
RNS3_ARATH9.3e-2131.84Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1[more]
RNLX_SOLLC8.7e-1932.77Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2[more]
RNS1_ARATH8.7e-1929.85Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1[more]
RNOY_CRAGI4.8e-1728.92Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KVR6_CUCSA1.1e-9777.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109040 PE=3 SV=1[more]
A0A0A0L0P9_CUCSA1.6e-7560.68Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109540 PE=3 SV=1[more]
M5W6T6_PRUPE4.0e-6351.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009963mg PE=3 SV=1[more]
A0A162A2W5_DAUCA2.2e-6148.87Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018604 PE=4 SV=1[more]
D0VUS4_CITMA2.2e-6151.60S-like RNase OS=Citrus maxima PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|778691966|ref|XP_011653385.1|1.6e-9777.52PREDICTED: ribonuclease 2-like [Cucumis sativus][more]
gi|700198557|gb|KGN53715.1|1.6e-9777.52hypothetical protein Csa_4G109040 [Cucumis sativus][more]
gi|659125792|ref|XP_008462862.1|4.0e-9678.08PREDICTED: ribonuclease 2-like isoform X1 [Cucumis melo][more]
gi|659125796|ref|XP_008462864.1|5.2e-9678.44PREDICTED: ribonuclease 2-like isoform X3 [Cucumis melo][more]
gi|659125801|ref|XP_008462866.1|3.5e-7659.31PREDICTED: ribonuclease 2-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001568RNase_T2-like
IPR018188RNase_T2_His_AS_1
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0033897ribonuclease T2 activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0044248 cellular catabolic process
biological_process GO:0016070 RNA metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0033897 ribonuclease T2 activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002480Cla002480.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001568Ribonuclease T2-likeGENE3DG3DSA:3.90.730.10coord: 36..231
score: 1.2
IPR001568Ribonuclease T2-likePANTHERPTHR11240RIBONUCLEASE T2coord: 1..228
score: 7.7
IPR001568Ribonuclease T2-likePFAMPF00445Ribonuclease_T2coord: 41..229
score: 3.3
IPR001568Ribonuclease T2-likeunknownSSF55895Ribonuclease Rh-likecoord: 38..230
score: 1.2
IPR018188Ribonuclease T2, His active site 1PROSITEPS00530RNASE_T2_1coord: 75..82
scor
NoneNo IPR availablePANTHERPTHR11240:SF16RIBONUCLEASE 2coord: 1..228
score: 7.7