Lsi03G009520 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G009520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribonuclease t2, putative
Location	chr03 : 18212985 .. 18221305 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCATTTTCTAGGTAATGTTATACATTCCATGATATTAAACATAATGCCTAGCTATCTTCTATACCAATGTTATTTCACTTTAACCTTTCACTACACTTGTAGATTAGTTCCTTGATTGAGGATATTGATAAGTATTGGCCAAGTTATCGGTGTGGTCTTGTAAACAGTTGCGATAACAGAAAAGGATCATTTTGGGCTCACCAGGTTCAAATATTCTAAGAAAAAATATACTTTTGGTCCTTCAAGTTAATTTGGATTTGATTTTGGATTCTTAAATTGTCAAATTCGACATTATAATTTCGAATATTTGAAATAATAAGTGATTCAGGTTAACTATCATTTTTTAAGCTAATGTCGCTTAAATATATTAATTTTAGGAAAATTTTTAAAAATAGAAAAATAAGGGAAACTATTTATACAAAATAGCAAAATTTATAGATAGTTGTGATAGATGCTAATAGAAGTCTATCAATGTCTATCAGTATTTTTTTTTCTATTTTCTGTAGGTAGTTTAATATTTTTTTTATCCGTGAAAATTTTCCTTAATTTTATAGTTTTTAAATCGTTGATGTGGCAAAAAAAAAAAAAACACTAATAATTTTAAAAATAAAAAATCTCATTAATTTTGTTCAGTTTTTTTTTTTTTTTTTTTTGGGTAGGAAAATGAAGAACATTTTTTTTAATTACATTGAAGAAGTTAGAAGAAAAGTGAAGATGATGTTTTTTTCTTTATATTTAATATTTTTTCTATAATAAAATTTTGACGCTTATCTTGTAATAAATTAATGCCACATCAACAATATAATAAATAAATAATGTTATAATATTTTAAGAAATTTTTTCTTGAACAAATTATAAAAGCCACCCTTAAAGTATGGTGGTAGTTGCAATTACATCCTTAAACTTTCAATGGTAAGAATTGGGCTCTCAAAAACTTATACTTAACCCTCTAACTTAAAATAGTTTTAGAAATTAGACCCCAATAGGAGATAAAAATATAACCTTTGAACTTATACAATTGTTACAATTTCTATGATTATGTAAGTTTGAGGGTCAAATTTTAACATTTGTATAAAGTTTTTATAATTGAAAGTTTGAAGGGTATATAATTACAACTATCATCATACTTTATAGGAGTAGCTTTTGCAATTTGTCCAAAAAAATAAAAAATATAAGTCAACTTTCAGTCAACTACATTAGTGAAAATTAATGATAGTGACTAAAAAAGAGATGGTCTTACAAACCTCATGAGTTAAAATGTCGAGTTTGATAACTCGGGAACCAAAATCCTACCTAAATTAAATTTTAATGACTAAAAAGGTATTTTTTTCTAGTTGTTTATCTCTATCATTTTTTCCTTATCTTATTAAAAAAAATTGAGACTTAATCCTAAATTCTCTCTCTTTTTTCCCTTATCCATTGATGGCCATTTGGCATGTTATCACTACTGCAGTATGGTATGTTTTTTTCACCTCTTCCATCTCTGATGTTTTTCCTTTCTTCATTCTTACTTCACCCCTGAATAAAGGCATTTTCTTTTAAAGTTAAATATTTAGTTTTTAGATTGTGTTTCGAATATATTTTCAAAGTGTTTAATTTAAAAAATAAGTTATTTTAAAAAAAAAATTAGAGTGCTTGACAACCTATCAAAATAGCTTTTGAAGTGTATTTTAAATCGTTTTTATCAAAAGAGTTTAAATAAAAGGGACAATTGCAAATATAACAACGTCAGATTCAATGTATTATCATATATAGTAATATTTTTAAAAAATTGCAAATATAGCAAAGTCTATCAGATGATAGACTTCTATCGTTAATAAGACTTTTATGGTCTATCAGTAATAGGTCATAAGAGTATCAACGATAGAAGTCTATCACTGATAAACTTTGCTATATTTGTAATTTTTTAAAAATATTGTACACTTAGTTATTATCCTTAAAATTGCTACTTCATTACAATTACTCTAAATAAATAAAGATGAGTTTTTTTTTTTTTTTTTTTTTGTCCAAACCGGCCTTAACCAATGAAAATAGAAGTGTTTTGAAAACATTTAAAAACATATTTTAGAAAAGAAGGAAAAAACATATTCAAATTAAATACCATTATATTAGATTAGACTTATGCATATTAAACTAATCTTTAATTTCCCTTTTTTAATTTTTTGTGTAGAGAAACATGGAACCTGTGGATCTCCTGTAATCCTACAAGAATATGATTACTTCTTGACAACTCTCACCCTTTTCTTTAAGTATAATGTCACTGTAAGCAACTTCTTGACAACTCTCACCCTTTTCATGGATAAAGTCTAGTTAATTAGACGAGTAGTAGGAGTTAGGTCAATAACAAATATTGAATTATTTTTCTCCATTATATTACTTTTTTTTTCTTTTCTTTTTCTTTGTGTGTGTGTCTTTGTTTTGTGCCGTTGAGGATTTTGAAGCGTTTTTTTTTAAAAAAAAACTCAGGAAGCTCTGGAGAATGCTGAAATTGTGGCTTCCGATACCCAAAAATATCCTATTCAAGATGTCTTTAATGCAATTCACTCCGCTTTCGAAGCAAATCCAAAGCTTGCATGCGCTAAAAAGGGGATTATCAGAGAACTTCATCTATGCTTTGATAAACAATTTAAGGTATATACATATTACTTTGTGTTCATAAATTCATACCCAACCAAAATTAATCATATAAAAATTTTCTAATCCCTTCCTTTCCTTTTTTGTTTTTAAAATTTTTGTGCTTGTTTTCATACTTTTTTTTTTCAAAAGATGGTCGGCTTTCTAAAGGAAACATTTGAATCTTTAGCTTAATTTTCAAAAATATTAAAAAAAAAAAAAAAAATTCTTAAAGAACCTTTATAGGATGGATATAGTGTTTATCATCTTAATTTCTAAAAATCAAATGGTTATCAAACATAGTCTTAATTAGCTTTTAGTTTTTATTAAATTATTTGTAATGAATATGATTGATTGATGAAAGTAAATGTTTATATTCGTTGCAGCTACGTGATTGTGATGCTACAAAATCATGTCCCAAATCTGTTAAGCTCCCAAAATTCCATGAGCCAGAGGGTAAGCTTCTTTTTCTCTTAAGAATCTAAATTCAAAACACATTATTTGGCCACCATATAATTAAAGATGCATTATTTGACTGAATGGATCGCATATATATATATATATATATATATATATATATGTACAAAAAAAAAAAAAAAAAAGGAAAGTGCCTTTGGGTGCTTGGCTCATAAATTTTGGAATTAGGGAAGTTTGACCATATTTGAGCACTTAGAATGACATTATCGGAAATAATAAACCAAACTTATGGATATGGAAGAAGGGTTATTTTAATGAATGCTATAAATTTGAAAATAAAAATTTCCCTTCACCTCTTACCTTTTATCATTGGTTGTTGGTGATTGCCGCCAATCGACCGTCGTGACCGATGCTGGTCAACAGTTGTGACTATCGTTAGTGACTGCTGTGATCATTGTCGACGACCACCGCAGTGCTAACTACCTTGATCATCACAACCGCTGTTTATCATTCATTCGTGCTAGTCATTGATCTATAATATGATTTTTCTTTTACTGGAAATGTAGAGAAGAATGGGAGAAATGAGAAGGAGAAAGAGATAAGGAAATGGGAAGGAGAATGAAGAGTAAGAAAAGTAAAATGTAAAGAGATGAAGGAGACTATCTCCCGTGGCAGCTATTGTCATTGATGTTGAAGGAAGAAGATGAAGGGACTAGAAGGAAAAAGAAGGGGTGAGCTAGAGAAAGAAAGAAAAATAATAATTAATTAATGTTTGGGACATTTTTAAAAATAGAAAAATAAGGAAAACTATTTATATAAAATAGAAAATTTTTTAGATAGCTGTGATAGACGCGGATAAAAGTCTATCAATGTCTATCAGTTTTTTTTTTTTTTTTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTTTGAAAATTTTCCTTAATATTTTATAATTTAATAAGTTAATTAGAAAAATATTTTTAAATTAAAAATAGGTGTCATATCAATTTCCATTAGTAATTAACAAAAAAAAAAAAATTGACAGGTGAACTAAGAATGTTATTAAATGCATACCTCATAGAAAAAATTCATTTCATTCCAAAAAAATAAATAAATAAATCTGAGGCACGTTACTAGTGTCTAAATTTGTTAAAATTGTGTTAGTAAACTAAATTTCAAACTTTGCTACTTTGTTATCAAAAGCTAAATTTATGTAATTGAAAAGAATATATAAATTAGAAATTTAAATCAAAACTTAATTTTTAAACCGACACCAAATTTCAAATTTTGCTACTTTGTAAACAAACACCAAATTTATTATTAAAGAAAAACTAAATTATTGTCAAGAAAATCAATAGTGTAAATAAACTAATATAAATTTAATTTTAAAATGAATAAATTAAATGTTCATTCAAAATTATTATTAAAATTTGATCCATCGTAAACTAGAGGTTATATAGTTCACAAAATAACTGTTAAAAAACAAGAAAAAAAATACAGATTATCCAAACTCAGACATTAGTAACCTACCTCCAAATACAGGTTTCAGAAACACATGCTTTCAAATCTACACTACAAACAAAGATATTTGTAATTGTTAGGCTTCAAAACTTCCTTAAATAAACCTCCAGATATATTTGATTTCTTGACTTTTGTTTCTAAACCTACGTGCCAAAAGCCTTCGAGTTTCTTTTATTACCAAACACCTACCTCAAAAAAAAAAAAAATAATAATAATAATAATAATAATAACTTAGTGTCCTTTTTATGTCTCTATACTCAAAAGTTTACTCATGATTTTGAAAATGAAAAGAAAGACTAAAGAACTAAACAAAAAGGACATATTATAACACACTAGATGTGAAAGTTTAAACTAATAATTATCATCCAATTAGATAATTATTTGGTTTTAATTTTAGTTTTGAAATTAAACTTTAAATGTACATATTAGGAGTGTTTTTAAAATTTATTTTCAAAATCAAACCCAATTTTGAAAAAAGAAAAAATAGTTTTCAAAAAGAAAAATTATTATAAATAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTAACTATCTATTAATGATGTACTGCGATAGACTTCTATCACTTGAGCGAAACCAGCCCTTTCAAAAATTTTGTTTTTGTTTACAGAAAATAATTAAGAATTCAAATGTTTATATATGAATTAAGAAAATCATCAACGTGAGAGATCGAAGTACAACCTTCAAAAATTAAAAAAAAAAATTAAATTGTTAATTATCAAACGAGGCATATTTAATATTGTTTTTGTGATTGCAGAGGCTGACATGTTTAAGAGAGCAATTCCAAAAGTGATTGATGTTGAAGCAATTATGTAGCTTCATTTTTGGGCCTTGAAAAGATTAGAAATATCCTTCAACATTTTGGCCCTTATCTTTTATATCCAAATTTTCTTATATATATTCTCAAGTACTTTGCAATTCCCACCACAAAAATTTTGAACTTTATCATTTGGTTTGAATTGAATGGCTCCATTTTGAGGACGACTTTCTTTAATTTTCACTTAATTAGTGGTCTCAATAATTACACAATGTTATATTGTGTTATGTATAGTGTTTTCTTGTGGACATTATATCATATATTGTTGAGAATATTTTAATGTCATCTAAATCAAAATTAAATTATAATAGTAATATTATTATATATCATATAAGATATGGTCCAAAGGAATGAATAGTTGCAATAACAAATATAATGCTTTTTCAAATAAATATACATAAGCAATTTCAATCTATTTTTTATTCTATCATAAGTTTTTTTTTTTTTTAATACAACAAAAGTATTATGAAAATTTTAACCCTCTAATCTCAAAGTATATGGAAATTTCCCTCTTTGCCTTTCATTACATCCGACATTTCCTTTTTATAAGATTCCTGACACTATTCAAATAAATTAAATACGCTTAATTTTGACAAGTATAACTTCTAAAATAGTACTTTTTTTTTTCTATTCTTAATTATAACTAAGGTTTGAAATATCGATGTCGATGAAAATATTGAAGTCTCGATTTTATAGAAATATCGATAAAAATTTTGAGAAAATTTATGGAAATTGTTATAATTAATTAATGAAACTTTGATTGTGGCTTAATTAAACTATAACTAACCATTTTTAATCACAATTTCTATAAAGTAAGACAATATTTAGATGTCTATTGTAAATATCTGAGTAACTGTTGATCCAAAAGCAGAAATTTAAAAAAGAAATGAAAAAATAATTACACAATAATAAAAAGTTTATGAATATTTTGAGGTAAAATGATCTGAAAATTATGAAAGTTTTGGATGGTAAAAGAAAAAACTCACATTAATTCAATTTTAAGGTGACGTGATGTGAAAATTTAATGAAAAAAGTTTGATTGAGCTTAAAAATAAATATAGATTATTTTTTGTGGTTATTTTAAATTCAATTTATTTATAAATGAAAGTTTTGGGTAAAAAAATAAAGCTAATACTTGAGAAAAGTTCAAAATTAAAAAAAGCAGCACATAAAAAATGCTTAATCCTTTGTAAAAATGACATTGGCGTGTGAAACTATATAATTATGTGTGAGAGGACCATAAAATTGAAAATTTTGAATTGAGCTAAAATAGTTAATCATAAAAAAAAATTAAAATTTTCTCAAAATGTCGAAATGGGGGAATCGGAATATTCTCGAAATCTCGAAATTTTGTCAAAATTGGGAAAAAAACGAAATTTCTTCCAACCAATATTTCGAAATCTTGAAATTTAGAGATTTCGATGGAAAATTTTCACTAGATTATAACTAATATTGGAAAAAGACTTTTTATAATTGAAATAAGGGCTCTTTTCAAATATAGAAAAATAAGTCAAACTATTTACAAATATAGAAAAATTTTACCGTCTATCATTGATAGATCGCGATAGAATTCTATCGCTCAGACGATAGAATTTATTTGCTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCTATCACGGACAGAATGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTGTTTATAGTAATTTTTCCTGAAATAAAATGAATTAATTTTGATTTGCTTTATCAACACTTTCATGATTTTTGCTCCATTATTGGAAATGAAATTAATAAAGAATCGATGCATGAATGGTATAAGACTAAACCACAAATCTTGAACAACAAACAATTGGAGTAACTGATTACTAAAGAAAAGATTATAAGTAAATAATAATAATAATAATAAATTTCAAACCCACCTCTAGGAAGGATAGCCTTGTCAATGTCTCTATCACTTCCTTCCATCAATATACTAATAGTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTGATTCCAAAATTGTTTATAAATTAATTATTGTTAGGCTCAAAATTATCCTAAAACATGTCCGTAATCATCTTAAATGAATTTAATGTTTGATTTTACATTTTTAAACGTTCTTTTCTTACCATCAAAGTTCATTTTAAATAGTTAAAAGTATATTTTAAAGTGACTCAATTTAAAGTAAGTAAACAAAAATTCATACTCGATCTCATAGATACATATAGAGAATTTTGTGGAAACCTGTTTTTAATGAAAGTTGTATGTACGACTTGAAGGGAGATCTTTCATATCTTTCGAGATCCACTCCTACAATATGGAGTCAAAAAGCCAAAATAAATTATTTTAACCCTTAGAAAAAGAACACTTTGAACACGACAAAAGTAGTTTTTATCATTTCAAATTCACTCTCAAACATGTCTATATAGTCAAAAAGTTGTGCTCGTTCCGCCTAGGGCATGATCGTACATCTACCTTCGTTAAGATTATCTTAGCACTTGAAATCATCATTTCCAAGTCCATAAGTTCATAGGAATAACTTCAATCATATTCAAAAACAAAAAGCAACTATTGAAAATTTGTTATCTAATTAGGTGAGGGAGGTGATGGAGATTCACCTATTGATGGATATTTCTTAACGAGTTGAGCTATATTCAAATTGGTCACATTTATCCCATCTCCTAACAAATAAAGTACAATATATGACTTTTGAAATGGCATTTGAAACTTCTGTCAATACTAACAGCTTTTCTAACAAAAGGTTATATGTTTTTGTTTTAAAAGTTAGATTACTGATCTTGGTGGATCAAGAGCTTTCGAGAGGCGCTGTACCACCGAGCATACGAAGCGTGGAGGTTCGGCCAGTCGGAGGAGGAGGAGTAAGTGA

mRNA sequence

ATGAATGAAGCTCTGGAGAATGCTGAAATTGTGGCTTCCGATACCCAAAAATATCCTATTCAAGATGTCTTTAATGCAATTCACTCCGCTTTCGAAGCAAATCCAAAGCTTGCATGCGCTAAAAAGGGGATTATCAGAGAACTTCATCTATGCTTTGATAAACAATTTAAGATTACTGATCTTGGTGGATCAAGAGCTTTCGAGAGGCGCTGTACCACCGAGCATACGAAGCGTGGAGGTTCGGCCAGTCGGAGGAGGAGGAGTAAGTGA

Coding sequence (CDS)

ATGAATGAAGCTCTGGAGAATGCTGAAATTGTGGCTTCCGATACCCAAAAATATCCTATTCAAGATGTCTTTAATGCAATTCACTCCGCTTTCGAAGCAAATCCAAAGCTTGCATGCGCTAAAAAGGGGATTATCAGAGAACTTCATCTATGCTTTGATAAACAATTTAAGATTACTGATCTTGGTGGATCAAGAGCTTTCGAGAGGCGCTGTACCACCGAGCATACGAAGCGTGGAGGTTCGGCCAGTCGGAGGAGGAGGAGTAAGTGA

Protein sequence

MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITDLGGSRAFERRCTTEHTKRGGSASRRRRSK

Homology

[Close]

BLAST of Lsi03G009520 vs. Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + + L  A  VAS+++KYP+  +  AI +AF   P++ C K+  I E+ +CF K FK  D
Sbjct: 160 VTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFKPRD 219

Query: 61  LGGSRAFERR 71
             GS+    R
Sbjct: 220 CVGSQDLTSR 228

[Close]

BLAST of Lsi03G009520 vs. TrEMBL
Match: A0A0A0KVR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109040 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASDT+KYPIQDV NA+HSAF+ NPKLAC KKGII+E++LCFDKQFK+ D
Sbjct: 166 VTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKLRD 225

Query: 61  LGGSRA 67
              +++
Sbjct: 226 CDATKS 231

[Close]

BLAST of Lsi03G009520 vs. TrEMBL
Match: A0A0A0L0P9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109540 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFE-ANPKLACAKKGIIRELHLCFDKQFKIT 60
           + + L +A  VAS+T+KYPI+DV  AI + F  A PK++CAKKG ++EL LCFDK F+  
Sbjct: 169 VTKVLSDAGFVASNTEKYPIEDVVAAIKNEFNNATPKISCAKKGAVKELWLCFDKSFEPR 228

[Close]

BLAST of Lsi03G009520 vs. TrEMBL
Match: E0CX00_TRILE (Trichomaglin OS=Trichosanthes lepiniana PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           +++ALE+A IVAS+++ Y ++D+  A+ SA  A PKL C ++G++++L LCFDK FK  D
Sbjct: 132 VDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLRCDEEGLVQKLSLCFDKDFKPRD 191

[Close]

BLAST of Lsi03G009520 vs. TrEMBL
Match: M5W6T6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009963mg PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + + L  A  V S+T+KYP+  + +AI +AF   PKL C KKG + ELHLCF K FK  D
Sbjct: 170 VTKVLNEAGYVPSNTEKYPLGGIVSAIQNAFRTTPKLLC-KKGALEELHLCFYKDFKPRD 228

[Close]

BLAST of Lsi03G009520 vs. TrEMBL
Match: C4PD01_CITMA (S-like RNase OS=Citrus maxima PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-06
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           +   L  A  + S+T+KYP+  + +AI +AF A PKL C+ KG + ELHLCF K FK  D
Sbjct: 172 VTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCS-KGAVNELHLCFYKDFKPRD 230

[Close]

BLAST of Lsi03G009520 vs. TAIR10
Match: AT2G39780.1 (AT2G39780.1 ribonuclease 2)

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + + L  A  VAS+++KYP+  +  AI +AF   P++ C K+  I E+ +CF K FK  D
Sbjct: 160 VTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFKPRD 219

Query: 61  LGGSRAFERR 71
             GS+    R
Sbjct: 220 CVGSQDLTSR 228

[Close]

BLAST of Lsi03G009520 vs. NCBI nr
Match: gi|778691966|ref|XP_011653385.1| (PREDICTED: ribonuclease 2-like [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASDT+KYPIQDV NA+HSAF+ NPKLAC KKGII+E++LCFDKQFK+ D
Sbjct: 166 VTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKLRD 225

Query: 61  LGGSRA 67
              +++
Sbjct: 226 CDATKS 231

[Close]

BLAST of Lsi03G009520 vs. NCBI nr
Match: gi|700198557|gb|KGN53715.1| (hypothetical protein Csa_4G109040 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASDT+KYPIQDV NA+HSAF+ NPKLAC KKGII+E++LCFDKQFK+ D
Sbjct: 166 VTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKLRD 225

Query: 61  LGGSRA 67
              +++
Sbjct: 226 CDATKS 231

[Close]

BLAST of Lsi03G009520 vs. NCBI nr
Match: gi|659125792|ref|XP_008462862.1| (PREDICTED: ribonuclease 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK+ D
Sbjct: 165 VTEALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKLRD 224

Query: 61  LGGSRA 67
              +++
Sbjct: 225 CDATKS 230

[Close]

BLAST of Lsi03G009520 vs. NCBI nr
Match: gi|659125794|ref|XP_008462863.1| (PREDICTED: ribonuclease 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 3   EALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITDLG 62
           EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK+ D  
Sbjct: 135 EALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKLRDCD 194

Query: 63  GSRA 67
            +++
Sbjct: 195 ATKS 198

[Close]

BLAST of Lsi03G009520 vs. NCBI nr
Match: gi|659125796|ref|XP_008462864.1| (PREDICTED: ribonuclease 2-like isoform X3 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFK 58
           + EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK
Sbjct: 165 VTEALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFK 221

The following BLAST results are available for this feature:

BLAST of Lsi03G009520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNS2_ARATH	5.1e-06	37.14	Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1	[more]

BLAST of Lsi03G009520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVR6_CUCSA	2.0e-20	71.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109040 PE=3 SV=1	[more]
A0A0A0L0P9_CUCSA	1.0e-08	52.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109540 PE=3 SV=1	[more]
E0CX00_TRILE	1.5e-07	46.67	Trichomaglin OS=Trichosanthes lepiniana PE=1 SV=1	[more]
M5W6T6_PRUPE	1.2e-06	48.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009963mg PE=3 SV=1	[more]
C4PD01_CITMA	3.6e-06	46.67	S-like RNase OS=Citrus maxima PE=2 SV=1	[more]

BLAST of Lsi03G009520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39780.1	2.9e-07	37.14	ribonuclease 2	[more]

BLAST of Lsi03G009520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691966\|ref\|XP_011653385.1\|	2.8e-20	71.21	PREDICTED: ribonuclease 2-like [Cucumis sativus]	[more]
gi\|700198557\|gb\|KGN53715.1\|	2.8e-20	71.21	hypothetical protein Csa_4G109040 [Cucumis sativus]	[more]
gi\|659125792\|ref\|XP_008462862.1\|	2.4e-19	69.70	PREDICTED: ribonuclease 2-like isoform X1 [Cucumis melo]	[more]
gi\|659125794\|ref\|XP_008462863.1\|	3.1e-19	71.88	PREDICTED: ribonuclease 2-like isoform X2 [Cucumis melo]	[more]
gi\|659125796\|ref\|XP_008462864.1\|	2.6e-18	78.95	PREDICTED: ribonuclease 2-like isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0033897	ribonuclease T2 activity
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0044248	cellular catabolic process
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009520.1	Lsi03G009520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 2..74 score: 2.2
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 1..60 score: 1.
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 3..62 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G009520	Csa4G109040	Cucumber (Chinese Long) v2	culsiB276
Lsi03G009520	CSPI04G09320	Wild cucumber (PI 183967)	cpilsiB275
Lsi03G009520	Cucsa.398190	Cucumber (Gy14) v1	cgylsiB641
Lsi03G009520	CmaCh16G002600	Cucurbita maxima (Rimu)	cmalsiB307
Lsi03G009520	CmoCh16G002670	Cucurbita moschata (Rifu)	cmolsiB295
Lsi03G009520	Cla002480	Watermelon (97103) v1	lsiwmB240
Lsi03G009520	ClCG10G009300	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G009520	Cla97C10G192460	Watermelon (97103) v2	lsiwmbB218
Lsi03G009520	BhiUN207G21	Wax gourd	lsiwgoB309
Lsi03G009520	Cp4.1LG14g05080	Cucurbita pepo (Zucchini)	cpelsiB169
Lsi03G009520	CsGy4G009080	Cucumber (Gy14) v2	cgyblsiB259
Lsi03G009520	Carg16789	Silver-seed gourd	carlsiB790
Lsi03G009520	CsaV3_4G009480	Cucumber (Chinese Long) v3	cuclsiB297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G009520	Melon (DHL92) v3.5.1	lsimeB270
Lsi03G009520	Melon (DHL92) v3.6.1	lsimedB283
Lsi03G009520	Silver-seed gourd	carlsiB341
Lsi03G009520	Silver-seed gourd	carlsiB932
Lsi03G009520	Wax gourd	lsiwgoB292
Lsi03G009520	Cucurbita maxima (Rimu)	cmalsiB115
Lsi03G009520	Cucurbita maxima (Rimu)	cmalsiB657
Lsi03G009520	Cucurbita moschata (Rifu)	cmolsiB296
Lsi03G009520	Cucurbita moschata (Rifu)	cmolsiB646
Lsi03G009520	Cucurbita pepo (Zucchini)	cpelsiB168
Lsi03G009520	Cucurbita pepo (Zucchini)	cpelsiB170
Lsi03G009520	Cucurbita pepo (Zucchini)	cpelsiB340