Cla002346 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002346
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA polymerase delta subunit 4 family (AHRD V1 ***- D7KJU8_ARALL); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4
Location	Chr1 : 4450497 .. 4451992 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGGTTCATATCTCTTCTTTTCAAGTCTTCTCCGTTTCTTTACATTCCTGGATGTTTGCTTTCTTCGTTAGGTCTCTTGAAACTTCAATTACCGTTGGTTTTGGTTCGTTCATTAACGTGGTATGAATGGCCTGTGGACTTATGCCTCCTGATTCTGAAGGATTAAGCATGTTTCCGTTGAGAAGCTGTTGGATATTGGTTGCAACTAAGTTCTATAATAGTTGAATTAAAGATTCTCAATGTTTGGATCACTTTTGACGATTTCACTGAAAAATGTAGTCAATTTTTTATGCCTCGTGATTGTGAAGGATCAAGCATGTTGCAGTCAAGAAGTTGTTATCAGTTACAATCAATTTATTCCATAGTTGAATTAAGGATATCTATTGTTTGGATTTCTTTAACTTTCTTACTGTCAAATGTTATTAAATTAATACGTTTAGACTTATGCCTCAGAGTTATGCACAAAGAAGCTTGAACACTTTAGTCTTATTGTGTTTGTGTCTCATACGTGTTGGTCATTTGGATACTTTGAAACTTGTTGGACACATATCGGATACTTGTCATGATTAACACAATAAATATGCATTAAACACGACTTATACAAAATATAGGTCTAATAAGAAGACACAGTAATCTAGGACAAGTATAAGAAACTTCAAGAGCGAATTACATTAAACTTAGTTTTTAGCATATAGATGCATGAACTTATTGGCTGTTTTAGTATTAAATTATATATATTTTTAAAATTGTGTCCTTTCCGCATCCATCTTACAACTTTAGAAAATGATGTGTCACCATGTCTATGTTATGTTGTGTTGTATCTATGTTTCATATTCGTATTCTACTTCTTTTATTAGCAAGGATTATGCATGTTGGAGTAAAAAAGTTGTGGGATACCAGTTATAATTAGGTTCTATAGTAGTGGAATTATGGATGCCAAATGCTAGATTTCTTTTAATTTTCGACTGGAAAAATCTTATCTAACAATGTGTCTGGACGTCAGATATGATGTGGCTATAATATCTGGATATTTTTGAAAAAAGGGTGTACCTTTTGCTTAATCTATTTCAATAATCTGCATTTTGTTCCATTTTGATCATTGAATTTTGTTTTAGATGATTATGGAGCGTCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA

mRNA sequence

ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGATGATTATGGAGCGTCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA

Coding sequence (CDS)

ATGGCATCAGCGCGTGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAACAGTGGAATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACCAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCCTTTCTCACGGATCCTTCGACCTTCAAGATGATTATGGAGCGTCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCCTATGGACCTTGTCTTGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAAACTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAACGTGCAGTTGGAGTGCTTGTGGGATTCTCGAGTTTAA

Protein sequence

MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLECLWDSRV

Homology

[Close]

BLAST of Cla002346 vs. Swiss-Prot
Match: DPOD4_HUMAN (DNA polymerase delta subunit 4 OS=Homo sapiens GN=POLD4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-08
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 63  QDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLE 122
           +D+  A   +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +LK   G+ + +
Sbjct: 39  RDEEEAELELLRQFDLAWQYGPCTGITRLQRWCRAKQMGLEPPPEVWQVLKTHPGDPRFQ 98

Query: 123 C-LW 124
           C LW
Sbjct: 99  CSLW 102

[Close]

BLAST of Cla002346 vs. Swiss-Prot
Match: DPOD4_BOVIN (DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 72  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA--GNVQLEC-LW 124
           +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +L++  G+ + +C LW
Sbjct: 48  LLRQFDLAWQYGPCTGITRLQRWHRAEQMGLKPPPEVHQVLQSHPGDPRFQCSLW 102

[Close]

BLAST of Cla002346 vs. Swiss-Prot
Match: DPOD4_MOUSE (DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 72  MLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKA 115
           +LRQFD+   YGPC G+TR+ RW RA ++GL PP ++  +LKA
Sbjct: 48  LLRQFDLAWQYGPCTGITRLQRWSRAEQMGLKPPLEVYQVLKA 90

[Close]

BLAST of Cla002346 vs. TrEMBL
Match: A0A0A0KND6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172885 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-57
Identity = 115/127 (90.55%), Postives = 117/127 (92.13%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SEN LRQFDMN AYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Cla002346 vs. TrEMBL
Match: A0A067L638_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-37
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNS--GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHG 60
           MA+    +K FY+QRK++  GI+K+ SK+ K      KSP ++A++ SD  QP AL+SHG
Sbjct: 1   MATPTNDMKSFYRQRKSNRGGITKSTSKSKK------KSPKHAATISSDITQPKALISHG 60

Query: 61  SFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQ 120
           + DLQDDY   E++LRQFDMNMAYGPCLGMTR+ARWERA +LG+NPPK+IE +LK+G V 
Sbjct: 61  APDLQDDYDKQEDVLRQFDMNMAYGPCLGMTRLARWERAQRLGMNPPKEIEGMLKSGKVS 120

Query: 121 LECLWDSRV 128
           LECLWD RV
Sbjct: 121 LECLWDGRV 123

[Close]

BLAST of Cla002346 vs. TrEMBL
Match: A0A068VD12_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007402001 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-37
Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNSG-ISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGS 60
           MA+++  +K F+KQ+K SG I+KA +K+S  S++K+ SP  SA+ GSD  QPAAL+SHGS
Sbjct: 1   MATSKSDMKGFFKQKKKSGGITKAKAKSS--STKKSLSPKRSATYGSDITQPAALISHGS 60

Query: 61  FDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQL 120
            D++DDY   E +LRQFDMNMAYGPCLGM+R+ARWERA  LG+NPP+DI  LLKAG V  
Sbjct: 61  PDIEDDYDEKEEVLRQFDMNMAYGPCLGMSRLARWERAKSLGMNPPEDIGHLLKAGKVGA 120

Query: 121 ECLWDSRV 128
           ECLW+ RV
Sbjct: 121 ECLWEGRV 126

[Close]

BLAST of Cla002346 vs. TrEMBL
Match: D7KJU8_ARALL (DNA polymerase delta subunit 4 family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471085 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1


Query: 4   ARGGLKDFYKQRKNS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 63
           A   LK FYKQ K++   GISK     SKPSSRK  +P ++A+ GSD +QPAAL+SHGS 
Sbjct: 2   ATKNLKGFYKQTKSNITGGISK-----SKPSSRKV-TPKHAAAQGSDVIQPAALISHGSL 61

Query: 64  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 123
           DL +DY   E MLRQFDMN+AYGPCLGMTR+ RWERA +LG+NPP +IE LLK G VQ +
Sbjct: 62  DLNEDYDKEEEMLRQFDMNIAYGPCLGMTRLDRWERALRLGMNPPNEIEKLLKTGKVQQD 121

Query: 124 CLWDSRV 128
           CLW  RV
Sbjct: 122 CLWQGRV 122

[Close]

BLAST of Cla002346 vs. TrEMBL
Match: R0GMK7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010654mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-35
Identity = 79/130 (60.77%), Postives = 95/130 (73.08%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSH 60
           MA+    +K FYKQ K++   GISK     SKPSSRK  +P ++A+ GSD  QPAAL+SH
Sbjct: 1   MATTAKNMKGFYKQTKSNITGGISK-----SKPSSRKV-APKHAAAQGSDVTQPAALISH 60

Query: 61  GSFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNV 120
           GS DL  DYG  E MLRQFDM++AYGPCLGMTR+ RWERA +LG+NPP +IE LLK G V
Sbjct: 61  GSIDLNGDYGKEEEMLRQFDMDIAYGPCLGMTRLDRWERALRLGMNPPNEIEKLLKTGKV 120

Query: 121 QLECLWDSRV 128
           Q +CLW  RV
Sbjct: 121 QQDCLWQGRV 124

[Close]

BLAST of Cla002346 vs. NCBI nr
Match: gi|659073066|ref|XP_008467236.1| (PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 3.7e-58
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSNAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SENMLRQFDMNMAYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Cla002346 vs. NCBI nr
Match: gi|449451771|ref|XP_004143634.1| (PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-57
Identity = 115/127 (90.55%), Postives = 117/127 (92.13%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSF 60
           MAS RGGLKDFYKQRK+SGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL+SHGS 
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKA--KASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60

Query: 61  DLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLE 120
           DLQDDYG SEN LRQFDMN AYGPCLGMTRMARWERAC LGLNPPKDI TLLKAG VQLE
Sbjct: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120

Query: 121 CLWDSRV 128
           CLWDSRV
Sbjct: 121 CLWDSRV 125

[Close]

BLAST of Cla002346 vs. NCBI nr
Match: gi|802585153|ref|XP_012070271.1| (PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNS--GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHG 60
           MA+    +K FY+QRK++  GI+K+ SK+ K      KSP ++A++ SD  QP AL+SHG
Sbjct: 1   MATPTNDMKSFYRQRKSNRGGITKSTSKSKK------KSPKHAATISSDITQPKALISHG 60

Query: 61  SFDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQ 120
           + DLQDDY   E++LRQFDMNMAYGPCLGMTR+ARWERA +LG+NPPK+IE +LK+G V 
Sbjct: 61  APDLQDDYDKQEDVLRQFDMNMAYGPCLGMTRLARWERAQRLGMNPPKEIEGMLKSGKVS 120

Query: 121 LECLWDSRV 128
           LECLWD RV
Sbjct: 121 LECLWDGRV 123

[Close]

BLAST of Cla002346 vs. NCBI nr
Match: gi|661877743|emb|CDP18454.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 1   MASARGGLKDFYKQRKNSG-ISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGS 60
           MA+++  +K F+KQ+K SG I+KA +K+S  S++K+ SP  SA+ GSD  QPAAL+SHGS
Sbjct: 1   MATSKSDMKGFFKQKKKSGGITKAKAKSS--STKKSLSPKRSATYGSDITQPAALISHGS 60

Query: 61  FDLQDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQL 120
            D++DDY   E +LRQFDMNMAYGPCLGM+R+ARWERA  LG+NPP+DI  LLKAG V  
Sbjct: 61  PDIEDDYDEKEEVLRQFDMNMAYGPCLGMSRLARWERAKSLGMNPPEDIGHLLKAGKVGA 120

Query: 121 ECLWDSRV 128
           ECLW+ RV
Sbjct: 121 ECLWEGRV 126

[Close]

BLAST of Cla002346 vs. NCBI nr
Match: gi|1009172311|ref|XP_015867202.1| (PREDICTED: DNA polymerase delta subunit 4 [Ziziphus jujuba])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 1


Query: 3   SARGGLKDFYKQRKNSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALLSHGSFDL 62
           + +G +K FY+Q+K SGI+KA+SK  K S+ K+K P  S +LGSD  QP AL SHGS DL
Sbjct: 2   ATKGSMKGFYRQKKKSGIAKASSK--KSSAPKSK-PHASFTLGSDVAQPPALFSHGSPDL 61

Query: 63  QDDYGASENMLRQFDMNMAYGPCLGMTRMARWERACKLGLNPPKDIETLLKAGNVQLECL 122
           QDDY   E +LRQFD+NMAYGPC GMTR+ARWERA KLG+NPP++I  LLKA NV+ + L
Sbjct: 62  QDDYDEKEELLRQFDLNMAYGPCAGMTRLARWERASKLGMNPPQEIGALLKASNVRSQSL 121

Query: 123 WDSRV 128
           WD R+
Sbjct: 122 WDDRI 123

The following BLAST results are available for this feature:

BLAST of Cla002346 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPOD4_HUMAN	6.0e-08	43.75	DNA polymerase delta subunit 4 OS=Homo sapiens GN=POLD4 PE=1 SV=1	[more]
DPOD4_BOVIN	1.3e-07	45.45	DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1	[more]
DPOD4_MOUSE	3.0e-07	53.49	DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=3 SV=1	[more]

BLAST of Cla002346 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KND6_CUCSA	1.3e-57	90.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172885 PE=4 SV=1	[more]
A0A067L638_JATCU	7.3e-37	60.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1	[more]
A0A068VD12_COFCA	7.3e-37	61.72	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007402001 PE=4 SV=1	[more]
D7KJU8_ARALL	5.2e-35	62.20	DNA polymerase delta subunit 4 family OS=Arabidopsis lyrata subsp. lyrata GN=ARA...	[more]
R0GMK7_9BRAS	5.2e-35	60.77	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010654mg PE=4 SV=1	[more]

BLAST of Cla002346 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073066\|ref\|XP_008467236.1\|	3.7e-58	91.34	PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]	[more]
gi\|449451771\|ref\|XP_004143634.1\|	1.8e-57	90.55	PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus]	[more]
gi\|802585153\|ref\|XP_012070271.1\|	1.0e-36	60.47	PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]	[more]
gi\|661877743\|emb\|CDP18454.1\|	1.0e-36	61.72	unnamed protein product [Coffea canephora]	[more]
gi\|1009172311\|ref\|XP_015867202.1\|	2.0e-35	61.60	PREDICTED: DNA polymerase delta subunit 4 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007218	DNA_pol_delta_4

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000731	DNA synthesis involved in DNA repair
biological_process	GO:0071897	DNA biosynthetic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0043625	delta DNA polymerase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU14967	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU17540	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU78282	watermelon EST collection version 2.0	transcribed_cluster
WMU78307	watermelon EST collection version 2.0	transcribed_cluster
WMU78432	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002346	Cla002346.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU14967	WMU14967	transcribed_cluster
WMU17540	WMU17540	transcribed_cluster
WMU78307	WMU78307	transcribed_cluster
WMU78282	WMU78282	transcribed_cluster
WMU78432	WMU78432	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007218	DNA polymerase delta, subunit 4	PFAM	PF04081	DNA_pol_delta_4	coord: 63..113 score: 3.2
None	No IPR available	PANTHER	PTHR14303	DNA POLYMERASE DELTA SUBUNIT 4	coord: 1..127 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002346	Cla97C01G005670	Watermelon (97103) v2	wmwmbB238
Cla002346	MELO3C005384	Melon (DHL92) v3.5.1	mewmB031
Cla002346	ClCG01G005450	Watermelon (Charleston Gray)	wcgwmB145
Cla002346	CSPI05G08300	Wild cucumber (PI 183967)	cpiwmB419
Cla002346	Cucsa.115400	Cucumber (Gy14) v1	cgywmB172
Cla002346	CmaCh02G010330	Cucurbita maxima (Rimu)	cmawmB569
Cla002346	CmoCh02G010490	Cucurbita moschata (Rifu)	cmowmB564
Cla002346	Lsi09G005780	Bottle gourd (USVL1VR-Ls)	lsiwmB030
Cla002346	Cp4.1LG05g06850	Cucurbita pepo (Zucchini)	cpewmB718
Cla002346	CsGy5G005690	Cucumber (Gy14) v2	cgybwmB384
Cla002346	MELO3C005384.2	Melon (DHL92) v3.6.1	medwmB030
Cla002346	Carg08442	Silver-seed gourd	carwmB0712
Cla002346	CsaV3_5G005690	Cucumber (Chinese Long) v3	cucwmB436
Cla002346	Bhi12G000497	Wax gourd	wgowmB088

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002346	Melon (DHL92) v3.6.1	medwmB064
Cla002346	Silver-seed gourd	carwmB0737
Cla002346	Cucumber (Chinese Long) v3	cucwmB446
Cla002346	Watermelon (97103) v2	wmwmbB267
Cla002346	Wax gourd	wgowmB556
Cla002346	Watermelon (97103) v1	wmwmB124
Cla002346	Cucurbita maxima (Rimu)	cmawmB274
Cla002346	Cucurbita moschata (Rifu)	cmowmB264
Cla002346	Watermelon (Charleston Gray)	wcgwmB297
Cla002346	Cucumber (Chinese Long) v2	cuwmB411
Cla002346	Cucurbita pepo (Zucchini)	cpewmB189