CSPI05G08300 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G08300
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	DNA polymerase delta subunit 4 family
Location	Chr5 : 7050789 .. 7052501 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATAAAAAAATTGCTTTCTCTTTATTAATTATTCTTTTAGGTAATTTAGAATTAAAAAAGAAAAGAATGGGCCGGATCTCAATCGGATCCTGGCCCAGATATTATTAGGGTCCATATAAGGAGAAAGGCCACATCGAATTAGACCTCCAAAATGCAAAAGAACAAATTTGAAATTTGAAATTCCGAAGTCGATCGATCGCAGAGAAGGAGCAAAATCAAAAATGGCATCAACGCGAGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGAATCTCCAAGGCAAAGGCTTCAAAGCCCTCTTCTAGGAAAACTAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCGTTTCTCACGGATCCCTCGACCTTCAAGGTTCATATCTCTTCTTCTACACTCTTCTCCGTATCTTCATATTCTTGGATATCTGCTTAAGTTGTTGGGTATTGGTTGAGTTCTATAATTGTTGAATTAAAGATTCTCAATGGTTGAATAACTTTTCTCGTGGTTGGGAAGGATTAAGAAATTGTAGGGTTTCAGTCACAATCAAGTTATTCAATAGTTGAATTAAAGATATCTATAGTTTTGGATTCTTTAACTTTTTTACTGTAGTTATGCACAAAGAAGGATGAACACTTAAGTCTTACCGTCTCTATGATGTGTGTTGGACATTTGGATGCTTTCATACTTGTTGGACACTTATAGGATACTTGTTCACACCAAAAATGTCAGTAGTTGTGCAAAATTAATATAAGCCTAACCGGTCTGCACAAAGAACACTTGTTAAGTTACTAAATGGACACCTAACAATCTAGGACAAATGGAAGAAATTTTGAAGGCGTAGTACGTCAGTCATTTTTAGCACATATATGTATAAACTTATTGACTTTTCTAGTTATTGATGTATAATTTATAAATTTTTCCTTGCCACGTTTGTGTTGTATCTATGTGTCGTGTTCGTACCTACTTTTATAGTGGTCGAAATTATGGATGCCCAATGTTAGATTTCTTTTAATCTTCGACCAGAAAAATCTTATCTATCAATGTGTTTGGACATATGGCTATAATACCATGATATTTGTTTAAAAAAAAGTGTACCTTTTGCCTGATCTATTTTAATAATCTGCATTTTGTTTCATTTTGAACATTGATTTTTGTATTAGATGATTATGGCGTGTCTGAGAATACGCTGAGGCAATTTGATATGAACACGGCATATGGACCTTGCCTCGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAGTCTTGGTCTGAACCCTCCAAAAGACATTGGGACACTCTTAAAGGCTGGAAAAGTGCAGTTGGAGTGCTTATGGGATTCTCGAGTTTAAACTTGTATGCTTGGTGTGTTATTTTTGTTTAACGTATGAAGTGCATGCTGTGCTTTTGCTTTTGGACAAAATGTTCAGCCCCTAGCTGAAACAATATAATCACTTTTCCTGTGATGTGAATGGGGTTAGAATGTTTGCTGATGACAGCTCCCCTAGTTATTTACATCTTACTTATGTTGAAAACTTATAACAAGTAGTTGTATAGTTAAATTTGGTGATATTTTCCTTTCCTAGTGTAGTTACACTTGAACTTGATATGATGTGTGAATCCGTGATTAACGACACCTTTTGATTCCCAATAATTGAAAAGGGAGGGATATTTGT

mRNA sequence

ATGGCATCAACGCGAGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGAATCTCCAAGGCAAAGGCTTCAAAGCCCTCTTCTAGGAAAACTAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCGTTTCTCACGGATCCCTCGACCTTCAAGATGATTATGGCGTGTCTGAGAATACGCTGAGGCAATTTGATATGAACACGGCATATGGACCTTGCCTCGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAGTCTTGGTCTGAACCCTCCAAAAGACATTGGGACACTCTTAAAGGCTGGAAAAGTGCAGTTGGAGTGCTTATGGGATTCTCGAGTTTAA

Coding sequence (CDS)

ATGGCATCAACGCGAGGAGGGTTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGAATCTCCAAGGCAAAGGCTTCAAAGCCCTCTTCTAGGAAAACTAAATCTCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCGTTTCTCACGGATCCCTCGACCTTCAAGATGATTATGGCGTGTCTGAGAATACGCTGAGGCAATTTGATATGAACACGGCATATGGACCTTGCCTCGGAATGACCAGAATGGCACGGTGGGAGCGTGCCTGTAGTCTTGGTCTGAACCCTCCAAAAGACATTGGGACACTCTTAAAGGCTGGAAAAGTGCAGTTGGAGTGCTTATGGGATTCTCGAGTTTAA

Homology

[Close]

BLAST of CSPI05G08300 vs. Swiss-Prot
Match: DPOD4_SCHPO (DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdm1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1


Query: 68  ENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLL 111
           E  L  FD    YGP LGMTRM RW+RA +  LNPP+ +G +L
Sbjct: 94  EFILHHFDTTARYGPYLGMTRMQRWKRAKNFNLNPPETVGKIL 136

[Close]

BLAST of CSPI05G08300 vs. TrEMBL
Match: A0A0A0KND6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172885 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. TrEMBL
Match: A0A068VD12_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007402001 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.0e-38
Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQ-RKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLD 60
           MA+++  +K F+KQ +KS GI+KAKA   S++K+ SP  SA+ GSD  QPAAL+SHGS D
Sbjct: 1   MATSKSDMKGFFKQKKKSGGITKAKAKSSSTKKSLSPKRSATYGSDITQPAALISHGSPD 60

Query: 61  LQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLEC 120
           ++DDY   E  LRQFDMN AYGPCLGM+R+ARWERA SLG+NPP+DIG LLKAGKV  EC
Sbjct: 61  IEDDYDEKEEVLRQFDMNMAYGPCLGMSRLARWERAKSLGMNPPEDIGHLLKAGKVGAEC 120

Query: 121 LWDSRV 126
           LW+ RV
Sbjct: 121 LWEGRV 126

[Close]

BLAST of CSPI05G08300 vs. TrEMBL
Match: A0A067L638_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-34
Identity = 77/127 (60.63%), Postives = 95/127 (74.80%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSS--GISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60
           MA+    +K FY+QRKS+  GI+K+     S  K KSP ++A++ SD  QP AL+SHG+ 
Sbjct: 1   MATPTNDMKSFYRQRKSNRGGITKST----SKSKKKSPKHAATISSDITQPKALISHGAP 60

Query: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120
           DLQDDY   E+ LRQFDMN AYGPCLGMTR+ARWERA  LG+NPPK+I  +LK+GKV LE
Sbjct: 61  DLQDDYDKQEDVLRQFDMNMAYGPCLGMTRLARWERAQRLGMNPPKEIEGMLKSGKVSLE 120

Query: 121 CLWDSRV 126
           CLWD RV
Sbjct: 121 CLWDGRV 123

[Close]

BLAST of CSPI05G08300 vs. TrEMBL
Match: R0GMK7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010654mg PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.8e-34
Identity = 76/125 (60.80%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MA+T   +K FYKQ KS+       SKPSSRK  +P ++A+ GSD  QPAAL+SHGS+DL
Sbjct: 1   MATTAKNMKGFYKQTKSNITGGISKSKPSSRKV-APKHAAAQGSDVTQPAALISHGSIDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
             DYG  E  LRQFDM+ AYGPCLGMTR+ RWERA  LG+NPP +I  LLK GKVQ +CL
Sbjct: 61  NGDYGKEEEMLRQFDMDIAYGPCLGMTRLDRWERALRLGMNPPNEIEKLLKTGKVQQDCL 120

Query: 121 WDSRV 126
           W  RV
Sbjct: 121 WQGRV 124

[Close]

BLAST of CSPI05G08300 vs. TrEMBL
Match: Q1H568_ARATH (At1g09815 OS=Arabidopsis thaliana GN=POLD4 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-33
Identity = 76/125 (60.80%), Postives = 89/125 (71.20%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MA+T   LK FYKQ KS+       SKPSSRK  +P ++A+ GSD  QPAAL+SHGS+DL
Sbjct: 1   MATTAKNLKGFYKQTKSNITGGISKSKPSSRKV-APKHAAAQGSDVTQPAALISHGSVDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
            +DY   E  LRQFDMN  YGPCLGMTR+ RWERA  LG+NPP +I  LLK GKVQ +CL
Sbjct: 61  NEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCL 120

Query: 121 WDSRV 126
           W  RV
Sbjct: 121 WQGRV 124

[Close]

BLAST of CSPI05G08300 vs. TAIR10
Match: AT1G09815.1 (AT1G09815.1 polymerase delta 4)

HSP 1 Score: 150.2 bits (378), Expect = 8.5e-37
Identity = 76/125 (60.80%), Postives = 89/125 (71.20%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MA+T   LK FYKQ KS+       SKPSSRK  +P ++A+ GSD  QPAAL+SHGS+DL
Sbjct: 1   MATTAKNLKGFYKQTKSNITGGISKSKPSSRKV-APKHAAAQGSDVTQPAALISHGSVDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
            +DY   E  LRQFDMN  YGPCLGMTR+ RWERA  LG+NPP +I  LLK GKVQ +CL
Sbjct: 61  NEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCL 120

Query: 121 WDSRV 126
           W  RV
Sbjct: 121 WQGRV 124

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: gi|449451771|ref|XP_004143634.1| (PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 2.9e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: gi|659073066|ref|XP_008467236.1| (PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-60
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGS+AVQPAALVSHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSNAVQPAALVSHGSLDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
           QDDYG SEN LRQFDMN AYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL
Sbjct: 61  QDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WDSRV 126
           WDSRV
Sbjct: 121 WDSRV 125

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: gi|661877743|emb|CDP18454.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 165.2 bits (417), Expect = 7.2e-38
Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQ-RKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLD 60
           MA+++  +K F+KQ +KS GI+KAKA   S++K+ SP  SA+ GSD  QPAAL+SHGS D
Sbjct: 1   MATSKSDMKGFFKQKKKSGGITKAKAKSSSTKKSLSPKRSATYGSDITQPAALISHGSPD 60

Query: 61  LQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLEC 120
           ++DDY   E  LRQFDMN AYGPCLGM+R+ARWERA SLG+NPP+DIG LLKAGKV  EC
Sbjct: 61  IEDDYDEKEEVLRQFDMNMAYGPCLGMSRLARWERAKSLGMNPPEDIGHLLKAGKVGAEC 120

Query: 121 LWDSRV 126
           LW+ RV
Sbjct: 121 LWEGRV 126

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: gi|802585153|ref|XP_012070271.1| (PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas])

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-34
Identity = 77/127 (60.63%), Postives = 95/127 (74.80%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSS--GISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSL 60
           MA+    +K FY+QRKS+  GI+K+     S  K KSP ++A++ SD  QP AL+SHG+ 
Sbjct: 1   MATPTNDMKSFYRQRKSNRGGITKST----SKSKKKSPKHAATISSDITQPKALISHGAP 60

Query: 61  DLQDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLE 120
           DLQDDY   E+ LRQFDMN AYGPCLGMTR+ARWERA  LG+NPPK+I  +LK+GKV LE
Sbjct: 61  DLQDDYDKQEDVLRQFDMNMAYGPCLGMTRLARWERAQRLGMNPPKEIEGMLKSGKVSLE 120

Query: 121 CLWDSRV 126
           CLWD RV
Sbjct: 121 CLWDGRV 123

[Close]

BLAST of CSPI05G08300 vs. NCBI nr
Match: gi|727605528|ref|XP_010475834.1| (PREDICTED: uncharacterized protein LOC104755187 [Camelina sativa])

HSP 1 Score: 151.8 bits (382), Expect = 8.2e-34
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60
           MA+T   +K FYKQ+KS+       SKPSSRK  +P ++A+ GSDA QPAAL+SHGS+DL
Sbjct: 1   MATTAKNMKGFYKQKKSNITGGISKSKPSSRKA-APKHAAAQGSDATQPAALISHGSVDL 60

Query: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120
            +DY   E  LRQFDMN AYGPCLGM R+ RWERA  LG+NPP +I  LLK GKVQ +CL
Sbjct: 61  NEDYDKEEEMLRQFDMNIAYGPCLGMARLDRWERALRLGMNPPNEIEKLLKTGKVQQDCL 120

Query: 121 WDSRV 126
           W  RV
Sbjct: 121 WQGRV 124

The following BLAST results are available for this feature:

BLAST of CSPI05G08300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPOD4_SCHPO	1.1e-06	53.49	DNA polymerase delta subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CSPI05G08300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KND6_CUCSA	2.0e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172885 PE=4 SV=1	[more]
A0A068VD12_COFCA	5.0e-38	64.29	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007402001 PE=4 SV=1	[more]
A0A067L638_JATCU	4.4e-34	60.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1	[more]
R0GMK7_9BRAS	9.8e-34	60.80	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010654mg PE=4 SV=1	[more]
Q1H568_ARATH	1.7e-33	60.80	At1g09815 OS=Arabidopsis thaliana GN=POLD4 PE=2 SV=1	[more]

BLAST of CSPI05G08300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09815.1	8.5e-37	60.80	polymerase delta 4	[more]

BLAST of CSPI05G08300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451771\|ref\|XP_004143634.1\|	2.9e-63	100.00	PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus]	[more]
gi\|659073066\|ref\|XP_008467236.1\|	1.3e-60	96.80	PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]	[more]
gi\|661877743\|emb\|CDP18454.1\|	7.2e-38	64.29	unnamed protein product [Coffea canephora]	[more]
gi\|802585153\|ref\|XP_012070271.1\|	6.3e-34	60.63	PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]	[more]
gi\|727605528\|ref\|XP_010475834.1\|	8.2e-34	60.80	PREDICTED: uncharacterized protein LOC104755187 [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007218	DNA_pol_delta_4

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000731	DNA synthesis involved in DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0043625	delta DNA polymerase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G08300.1	CSPI05G08300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007218	DNA polymerase delta, subunit 4	PFAM	PF04081	DNA_pol_delta_4	coord: 62..111 score: 1.7
None	No IPR available	PANTHER	PTHR14303	DNA POLYMERASE DELTA SUBUNIT 4	coord: 1..125 score: 2.4
None	No IPR available	PANTHER	PTHR14303:SF0	DNA POLYMERASE DELTA SUBUNIT 4	coord: 1..125 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G08300	Cla002346	Watermelon (97103) v1	cpiwmB419
CSPI05G08300	MELO3C005384	Melon (DHL92) v3.5.1	cpimeB351
CSPI05G08300	ClCG01G005450	Watermelon (Charleston Gray)	cpiwcgB379
CSPI05G08300	Lsi09G005780	Bottle gourd (USVL1VR-Ls)	cpilsiB322
CSPI05G08300	MELO3C005384.2	Melon (DHL92) v3.6.1	cpimedB341
CSPI05G08300	CsaV3_5G005690	Cucumber (Chinese Long) v3	cpicucB285
CSPI05G08300	Cla97C01G005670	Watermelon (97103) v2	cpiwmbB349
CSPI05G08300	Bhi12G000497	Wax gourd	cpiwgoB458
CSPI05G08300	Cucsa.115400	Cucumber (Gy14) v1	cgycpiB148
CSPI05G08300	CmaCh02G010330	Cucurbita maxima (Rimu)	cmacpiB615
CSPI05G08300	CmoCh02G010490	Cucurbita moschata (Rifu)	cmocpiB607
CSPI05G08300	Cp4.1LG05g06850	Cucurbita pepo (Zucchini)	cpecpiB739
CSPI05G08300	CsGy5G005690	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G08300	Carg08442	Silver-seed gourd	carcpiB0749

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G08300	Wild cucumber (PI 183967)	cpicpiB113
CSPI05G08300	Cucumber (Gy14) v1	cgycpiB388
CSPI05G08300	Cucurbita maxima (Rimu)	cmacpiB296
CSPI05G08300	Cucurbita moschata (Rifu)	cmocpiB287
CSPI05G08300	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G08300	Melon (DHL92) v3.5.1	cpimeB400
CSPI05G08300	Watermelon (97103) v1	cpiwmB409
CSPI05G08300	Cucurbita pepo (Zucchini)	cpecpiB187
CSPI05G08300	Bottle gourd (USVL1VR-Ls)	cpilsiB384
CSPI05G08300	Melon (DHL92) v3.6.1	cpimedB395
CSPI05G08300	Cucumber (Gy14) v2	cgybcpiB129
CSPI05G08300	Silver-seed gourd	carcpiB0773
CSPI05G08300	Cucumber (Chinese Long) v3	cpicucB265