Cp4.1LG05g06850 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g06850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DNA polymerase delta subunit 4 family
Location	Cp4.1LG05 : 4185272 .. 4187011 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATCCGTATATTATTATATTTTTAAGCCTATTTCAATCTTAAATGGAAATTAAGAAAATAAAGTCAATGAGAAAAATAAAGGAGACTTTTTTGGGGCATAATTTTGTGCAATATTTAAAAGGAAATAAAGCATTAAAATTCAAGAAAATAGAATTTAAACCATATTATATATATAAATGTATTTTTGAAAAAAATATTAGTGGGCCGAAGCTCGATCGGGCGCCCGGCCCAGATAACATTAGGGTCCATTTAAAGAGAAAGGTGCGATTGAATCGACGCTTCAAGAACAAATTCAAATTTTGAAAATCGATCAGAGAGAGTGAGAGGAAGAAAAATGGCATCGGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAGAACAGTGGAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTCTGCAACTTTGGACTCCGATGGCGTTCAACCGGCGGTTCTTATTTCTCACGGTTCCCTCGATCTCCGAGGTACAATCTCTCTCTCTCTCTCTCTATTCTTTTGTTTTCTTCATTGGGTTTCTTGAAAGTTTGATTACGGTTCTGGACTTTGTGCTTTGTGATTCTGAAGCATTAAGCATATTGCATTCGAGAAGCTTTTGGATTTCGATTACATTACAATTAAGTTATTCAATAGTCGAATTAAAGATTCTCGATGTTTAGTTCACTCATGATGTTGCGGCTGAAGTATTATCGAATTTATATGTTTAGCCTTATGCTTCGTGATTATGAAGGATTAGGCATGCTGCAGTCTAGAAGTTGTTGCGTGTCACTTAGGTATTGGGTTCTTTTAATTTTCGACTGTGAAATTGAATTAATATGTTTAGACTCCTGCTTCATGGTTATGAAAAGGATTTAGCATGAGTTGCTATTAATTTCTGTCATAGTTGTATTATGGACACCTAAAGTTCGGATTTTTTAAACCTTTCGCTGCAATTCTGTCACATGACTGATGCTTTTGGAAGTCTGATATGGGGCTATACTGGCTGGATATTAATGTACCTTGTGCTTCATCAATTTTTATGAACTTCATTTTGTTTTAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACAAGAATGGAACGATGGGAGCTTGCCGGTAAGCTTGGTTTGAACCCTCCAAAAGAGATTGAGACACTCTTAAAGGGTGGGAAAGTGCAGTTAGAGTGCTTGTGGGCTTCCCGAATCTAAACACTGCCCTGTTAGCTATGTTATTTTCGGTTAATGTATGAAGTTTGTGCTGTGCTTTTGGACAAAATGTTCAGCCTCTGGCTGAAATCATAAAGTGCTCTTGTATTCTTTTTTTCCTTTGTCATGTTTCTAAAAGAAATCTGTCTACCTTGTAGCATTTAAAATCTTTGTCAATGTCATAATGGTGGTAGGGACAGGAATAAAGCAAACAAGGTAGGGACGGGGAACCCCTTTAGTTCATTAAAGTCGGGTGACATATTACCGTTGACCTCATACCTCACACCTGATTTCCTCTCCCTATTGGTCTCACAATCTCATTGCCCCTTCTCGATCCCTTAGAAAGGTGGATACTCTTGTAGGTAGGAACAGCTTCACTTTCGGTGTTTGGCGCTCCCTTCGAACTGATATTACCTCATAAGTTCGGTAAAGCTGCTAGTGCGAACCGTGCACACTGAAAA

mRNA sequence

AAAAAATCCGTATATTATTATATTTTTAAGCCTATTTCAATCTTAAATGGAAATTAAGAAAATAAAGTCAATGAGAAAAATAAAGGAGACTTTTTTGGGGCATAATTTTGTGCAATATTTAAAAGGAAATAAAGCATTAAAATTCAAGAAAATAGAATTTAAACCATATTATATATATAAATGTATTTTTGAAAAAAATATTAGTGGGCCGAAGCTCGATCGGGCGCCCGGCCCAGATAACATTAGGGTCCATTTAAAGAGAAAGGTGCGATTGAATCGACGCTTCAAGAACAAATTCAAATTTTGAAAATCGATCAGAGAGAGTGAGAGGAAGAAAAATGGCATCGGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAGAACAGTGGAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTCTGCAACTTTGGACTCCGATGGCGTTCAACCGGCGGTTCTTATTTCTCACGGTTCCCTCGATCTCCGAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACAAGAATGGAACGATGGGAGCTTGCCGGTAAGCTTGGTTTGAACCCTCCAAAAGAGATTGAGACACTCTTAAAGGGTGGGAAAGTGCAGTTAGAGTGCTTGTGGGCTTCCCGAATCTAAACACTGCCCTGTTAGCTATGTTATTTTCGGTTAATGTATGAAGTTTGTGCTGTGCTTTTGGACAAAATGTTCAGCCTCTGGCTGAAATCATAAAGTGCTCTTGTATTCTTTTTTTCCTTTGTCATGTTTCTAAAAGAAATCTGTCTACCTTGTAGCATTTAAAATCTTTGTCAATGTCATAATGGTGGTAGGGACAGGAATAAAGCAAACAAGGTAGGGACGGGGAACCCCTTTAGTTCATTAAAGTCGGGTGACATATTACCGTTGACCTCATACCTCACACCTGATTTCCTCTCCCTATTGGTCTCACAATCTCATTGCCCCTTCTCGATCCCTTAGAAAGGTGGATACTCTTGTAGGTAGGAACAGCTTCACTTTCGGTGTTTGGCGCTCCCTTCGAACTGATATTACCTCATAAGTTCGGTAAAGCTGCTAGTGCGAACCGTGCACACTGAAAA

Coding sequence (CDS)

ATGGCATCGGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAGAACAGTGGAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTCTGCAACTTTGGACTCCGATGGCGTTCAACCGGCGGTTCTTATTTCTCACGGTTCCCTCGATCTCCGAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACAAGAATGGAACGATGGGAGCTTGCCGGTAAGCTTGGTTTGAACCCTCCAAAAGAGATTGAGACACTCTTAAAGGGTGGGAAAGTGCAGTTAGAGTGCTTGTGGGCTTCCCGAATCTAA

Protein sequence

MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECLWASRI

Homology

[Close]

BLAST of Cp4.1LG05g06850 vs. Swiss-Prot
Match: DPOD4_BOVIN (DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 64  ESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKG--GKVQLEC-LW 120
           E   +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +L+   G  + +C LW
Sbjct: 44  EELELLRQFDLAWQYGPCTGITRLQRWHRAEQMGLKPPPEVHQVLQSHPGDPRFQCSLW 102

[Close]

BLAST of Cp4.1LG05g06850 vs. Swiss-Prot
Match: DPOD4_HUMAN (DNA polymerase delta subunit 4 OS=Homo sapiens GN=POLD4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-08
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 59  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLK--GGKVQLE 118
           RD+      +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +LK   G  + +
Sbjct: 39  RDEEEAELELLRQFDLAWQYGPCTGITRLQRWCRAKQMGLEPPPEVWQVLKTHPGDPRFQ 98

Query: 119 C-LW 120
           C LW
Sbjct: 99  CSLW 102

[Close]

BLAST of Cp4.1LG05g06850 vs. Swiss-Prot
Match: DPOD4_MOUSE (DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 68  ILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLK 110
           +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +LK
Sbjct: 48  LLRQFDLAWQYGPCTGITRLQRWSRAEQMGLKPPLEVYQVLK 89

[Close]

BLAST of Cp4.1LG05g06850 vs. TrEMBL
Match: A0A0A0KND6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172885 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-47
Identity = 99/125 (79.20%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKV--SKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDL 60
           MAS RGG+KDFYKQRK+SG+SK   SKPSSRKTKS ANSA+L SD VQPA L+SHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60

Query: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECL 120
           +DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGLNPPK+I TLLK GKVQLECL
Sbjct: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WASRI 124
           W SR+
Sbjct: 121 WDSRV 125

[Close]

BLAST of Cp4.1LG05g06850 vs. TrEMBL
Match: A0A067L638_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDLRD 60
           MA+    MK FY+QRK++        S  K KS  ++AT+ SD  QP  LISHG+ DL+D
Sbjct: 1   MATPTNDMKSFYRQRKSNRGGITKSTSKSKKKSPKHAATISSDITQPKALISHGAPDLQD 60

Query: 61  DYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECLWA 120
           DY + E++LRQFDMNMAYGPCLGMTR+ RWE A +LG+NPPKEIE +LK GKV LECLW 
Sbjct: 61  DYDKQEDVLRQFDMNMAYGPCLGMTRLARWERAQRLGMNPPKEIEGMLKSGKVSLECLWD 120

Query: 121 SRI 124
            R+
Sbjct: 121 GRV 123

[Close]

BLAST of Cp4.1LG05g06850 vs. TrEMBL
Match: A0A059AL96_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00374 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-33
Identity = 71/123 (57.72%), Postives = 92/123 (74.80%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDLRD 60
           MA+    MK F+KQ+KN+  +   K SS++  S  N++T+ S+  QP  LISHGS+DL+D
Sbjct: 1   MATRSANMKGFFKQKKNTKSTSSKKGSSKR--SPTNASTVGSNVTQPPALISHGSIDLKD 60

Query: 61  DYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECLWA 120
           D+ ++E +LRQFDMNMAYGPCLGMTR+ RWE A KLGLNPPKE+E LLKGG+   ECLW 
Sbjct: 61  DHDQAEEVLRQFDMNMAYGPCLGMTRLSRWERAQKLGLNPPKEVEILLKGGRASSECLWD 120

Query: 121 SRI 124
            R+
Sbjct: 121 GRV 121

[Close]

BLAST of Cp4.1LG05g06850 vs. TrEMBL
Match: W1NH63_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00011p00265890 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-32
Identity = 69/126 (54.76%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 1   MASARGG---MKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLD 60
           MAS RGG   +K FY+QRK +  +K SKPS        +   LDSD  QP  L+SHGS+D
Sbjct: 1   MASVRGGGGDIKAFYRQRKKNNNTKPSKPSK-------SGVRLDSDPAQPPALLSHGSID 60

Query: 61  LRDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLEC 120
           ++ D+ + E +LR+FDMNM+YGPC+G+TR+ERWE A KLG+NPPK++ETLLKGG   L+C
Sbjct: 61  IKRDFDQCEEVLRRFDMNMSYGPCIGLTRLERWERANKLGMNPPKDVETLLKGGNAGLDC 119

Query: 121 LWASRI 124
           LW  R+
Sbjct: 121 LWEGRV 119

[Close]

BLAST of Cp4.1LG05g06850 vs. TrEMBL
Match: A0A078DYG6_BRANA (BnaA06g05740D protein OS=Brassica napus GN=BnaA06g05740D PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-32
Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLD 60
           MA+    MK FYKQ K++   G+SK SKPSSRK   + ++AT  SD  QPA LISHGSLD
Sbjct: 1   MATTAKNMKGFYKQTKSNITGGISK-SKPSSRKVSPK-HAATQGSDATQPAALISHGSLD 60

Query: 61  LRDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLEC 120
           ++D Y E E +LRQFDMNMAYGPC+GMTR++RWE A +LG+NPP EI+ LLK  KVQ +C
Sbjct: 61  VKDGYDEKEEMLRQFDMNMAYGPCVGMTRVDRWERALRLGMNPPNEIQRLLKTEKVQQDC 120

Query: 121 LWASRI 124
           LW  R+
Sbjct: 121 LWQGRV 124

[Close]

BLAST of Cp4.1LG05g06850 vs. TAIR10
Match: AT1G09815.1 (AT1G09815.1 polymerase delta 4)

HSP 1 Score: 143.3 bits (360), Expect = 1.0e-34
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLD 60
           MA+    +K FYKQ K++   G+SK SKPSSRK   + ++A   SD  QPA LISHGS+D
Sbjct: 1   MATTAKNLKGFYKQTKSNITGGISK-SKPSSRKVAPK-HAAAQGSDVTQPAALISHGSVD 60

Query: 61  LRDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLEC 120
           L +DY + E +LRQFDMN+ YGPCLGMTR++RWE A +LG+NPP EIE LLK GKVQ +C
Sbjct: 61  LNEDYDKEEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDC 120

Query: 121 LWASRI 124
           LW  R+
Sbjct: 121 LWQGRV 124

[Close]

BLAST of Cp4.1LG05g06850 vs. NCBI nr
Match: gi|659073066|ref|XP_008467236.1| (PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-48
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKV--SKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDL 60
           MAS RGG+KDFYKQRK+SG+SK   SKPSSRKTKS ANSA+L S+ VQPA L+SHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSNAVQPAALVSHGSLDL 60

Query: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECL 120
           +DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGLNPPK+I TLLK GKVQLECL
Sbjct: 61  QDDYGESENMLRQFDMNMAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WASRI 124
           W SR+
Sbjct: 121 WDSRV 125

[Close]

BLAST of Cp4.1LG05g06850 vs. NCBI nr
Match: gi|449451771|ref|XP_004143634.1| (PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 2.2e-47
Identity = 99/125 (79.20%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKV--SKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDL 60
           MAS RGG+KDFYKQRK+SG+SK   SKPSSRKTKS ANSA+L SD VQPA L+SHGSLDL
Sbjct: 1   MASTRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDL 60

Query: 61  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECL 120
           +DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGLNPPK+I TLLK GKVQLECL
Sbjct: 61  QDDYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECL 120

Query: 121 WASRI 124
           W SR+
Sbjct: 121 WDSRV 125

[Close]

BLAST of Cp4.1LG05g06850 vs. NCBI nr
Match: gi|802585153|ref|XP_012070271.1| (PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas])

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDLRD 60
           MA+    MK FY+QRK++        S  K KS  ++AT+ SD  QP  LISHG+ DL+D
Sbjct: 1   MATPTNDMKSFYRQRKSNRGGITKSTSKSKKKSPKHAATISSDITQPKALISHGAPDLQD 60

Query: 61  DYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECLWA 120
           DY + E++LRQFDMNMAYGPCLGMTR+ RWE A +LG+NPPKEIE +LK GKV LECLW 
Sbjct: 61  DYDKQEDVLRQFDMNMAYGPCLGMTRLARWERAQRLGMNPPKEIEGMLKSGKVSLECLWD 120

Query: 121 SRI 124
            R+
Sbjct: 121 GRV 123

[Close]

BLAST of Cp4.1LG05g06850 vs. NCBI nr
Match: gi|727571473|ref|XP_010458289.1| (PREDICTED: uncharacterized protein LOC104739581 [Camelina sativa])

HSP 1 Score: 149.1 bits (375), Expect = 5.2e-33
Identity = 75/126 (59.52%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLD 60
           MA+    MK FYKQ+K++   G+SK SKPSSRK   +  +A   SD  QPA LISHGS+D
Sbjct: 1   MATTAKNMKGFYKQKKSNITGGISK-SKPSSRKAAPKHAAAAQSSDATQPAALISHGSVD 60

Query: 61  LRDDYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLEC 120
           L +DY + E +LRQFDMN+AYGPCLGM R++RWE A +LG+NPP EIE LLK GKVQ +C
Sbjct: 61  LNEDYDKEEEMLRQFDMNIAYGPCLGMARLDRWERALRLGMNPPNEIEKLLKTGKVQQDC 120

Query: 121 LWASRI 124
           LW  R+
Sbjct: 121 LWQGRV 125

[Close]

BLAST of Cp4.1LG05g06850 vs. NCBI nr
Match: gi|702459669|ref|XP_010027801.1| (PREDICTED: uncharacterized protein LOC104418231 [Eucalyptus grandis])

HSP 1 Score: 149.1 bits (375), Expect = 5.2e-33
Identity = 71/123 (57.72%), Postives = 92/123 (74.80%), Query Frame = 1


Query: 1   MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDGVQPAVLISHGSLDLRD 60
           MA+    MK F+KQ+KN+  +   K SS++  S  N++T+ S+  QP  LISHGS+DL+D
Sbjct: 1   MATRSANMKGFFKQKKNTKSTSSKKGSSKR--SPTNASTVGSNVTQPPALISHGSIDLKD 60

Query: 61  DYGESENILRQFDMNMAYGPCLGMTRMERWELAGKLGLNPPKEIETLLKGGKVQLECLWA 120
           D+ ++E +LRQFDMNMAYGPCLGMTR+ RWE A KLGLNPPKE+E LLKGG+   ECLW 
Sbjct: 61  DHDQAEEVLRQFDMNMAYGPCLGMTRLSRWERAQKLGLNPPKEVEILLKGGRASSECLWD 120

Query: 121 SRI 124
            R+
Sbjct: 121 GRV 121

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g06850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPOD4_BOVIN	3.4e-08	44.07	DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1	[more]
DPOD4_HUMAN	5.8e-08	43.75	DNA polymerase delta subunit 4 OS=Homo sapiens GN=POLD4 PE=1 SV=1	[more]
DPOD4_MOUSE	2.9e-07	52.38	DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g06850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KND6_CUCSA	1.5e-47	79.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172885 PE=4 SV=1	[more]
A0A067L638_JATCU	2.8e-33	58.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1	[more]
A0A059AL96_EUCGR	3.6e-33	57.72	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00374 PE=4 SV=1	[more]
W1NH63_AMBTC	2.4e-32	54.76	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00011p00265890 PE=4 SV=...	[more]
A0A078DYG6_BRANA	3.1e-32	60.32	BnaA06g05740D protein OS=Brassica napus GN=BnaA06g05740D PE=4 SV=1	[more]

BLAST of Cp4.1LG05g06850 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09815.1	1.0e-34	58.73	polymerase delta 4	[more]

BLAST of Cp4.1LG05g06850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073066\|ref\|XP_008467236.1\|	1.5e-48	80.00	PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]	[more]
gi\|449451771\|ref\|XP_004143634.1\|	2.2e-47	79.20	PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus]	[more]
gi\|802585153\|ref\|XP_012070271.1\|	4.0e-33	58.54	PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]	[more]
gi\|727571473\|ref\|XP_010458289.1\|	5.2e-33	59.52	PREDICTED: uncharacterized protein LOC104739581 [Camelina sativa]	[more]
gi\|702459669\|ref\|XP_010027801.1\|	5.2e-33	57.72	PREDICTED: uncharacterized protein LOC104418231 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR007218	DNA_pol_delta_4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000731	DNA synthesis involved in DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0043625	delta DNA polymerase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g06850.1	Cp4.1LG05g06850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007218	DNA polymerase delta, subunit 4	PFAM	PF04081	DNA_pol_delta_4	coord: 60..109 score: 2.6
None	No IPR available	PANTHER	PTHR14303	DNA POLYMERASE DELTA SUBUNIT 4	coord: 1..123 score: 9.9
None	No IPR available	PANTHER	PTHR14303:SF0	DNA POLYMERASE DELTA SUBUNIT 4	coord: 1..123 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g06850	Cucsa.115400	Cucumber (Gy14) v1	cgycpeB0272
Cp4.1LG05g06850	CmaCh02G010330	Cucurbita maxima (Rimu)	cmacpeB646
Cp4.1LG05g06850	CmoCh02G010490	Cucurbita moschata (Rifu)	cmocpeB595
Cp4.1LG05g06850	Cla002346	Watermelon (97103) v1	cpewmB718
Cp4.1LG05g06850	MELO3C005384	Melon (DHL92) v3.5.1	cpemeB648
Cp4.1LG05g06850	ClCG01G005450	Watermelon (Charleston Gray)	cpewcgB640
Cp4.1LG05g06850	CSPI05G08300	Wild cucumber (PI 183967)	cpecpiB739
Cp4.1LG05g06850	Lsi09G005780	Bottle gourd (USVL1VR-Ls)	cpelsiB583
Cp4.1LG05g06850	MELO3C005384.2	Melon (DHL92) v3.6.1	cpemedB775
Cp4.1LG05g06850	CsaV3_5G005690	Cucumber (Chinese Long) v3	cpecucB0916
Cp4.1LG05g06850	Bhi12G000497	Wax gourd	cpewgoB0914
Cp4.1LG05g06850	CsGy5G005690	Cucumber (Gy14) v2	cgybcpeB692
Cp4.1LG05g06850	Carg08442	Silver-seed gourd	carcpeB1002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g06850	Wax gourd	cpewgoB0925
Cp4.1LG05g06850	Cucurbita pepo (Zucchini)	cpecpeB057
Cp4.1LG05g06850	Cucurbita pepo (Zucchini)	cpecpeB222
Cp4.1LG05g06850	Cucurbita pepo (Zucchini)	cpecpeB245
Cp4.1LG05g06850	Cucumber (Gy14) v1	cgycpeB0684
Cp4.1LG05g06850	Cucurbita maxima (Rimu)	cmacpeB331
Cp4.1LG05g06850	Cucurbita maxima (Rimu)	cmacpeB358
Cp4.1LG05g06850	Cucurbita maxima (Rimu)	cmacpeB453
Cp4.1LG05g06850	Cucurbita moschata (Rifu)	cmocpeB295
Cp4.1LG05g06850	Cucurbita moschata (Rifu)	cmocpeB322
Cp4.1LG05g06850	Cucurbita moschata (Rifu)	cmocpeB414
Cp4.1LG05g06850	Wild cucumber (PI 183967)	cpecpiB725
Cp4.1LG05g06850	Cucumber (Chinese Long) v2	cpecuB725
Cp4.1LG05g06850	Cucumber (Chinese Long) v2	cpecuB737
Cp4.1LG05g06850	Watermelon (Charleston Gray)	cpewcgB678
Cp4.1LG05g06850	Watermelon (97103) v1	cpewmB705
Cp4.1LG05g06850	Watermelon (97103) v1	cpewmB710
Cp4.1LG05g06850	Melon (DHL92) v3.5.1	cpemeB701
Cp4.1LG05g06850	Melon (DHL92) v3.6.1	cpemedB835
Cp4.1LG05g06850	Silver-seed gourd	carcpeB1041
Cp4.1LG05g06850	Cucumber (Chinese Long) v3	cpecucB0903