ClCG11G003860 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G003860
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNADH dehydrogenase 1 beta subcomplex subunit 9
LocationCG_Chr11 : 4090241 .. 4095188 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTGGTCCAAATCGAAACCACAAACAACACAGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGTATTCGTTTCTTTTTTCCCCCATTTCCACTTCTCTGTTTTGACATTTCTTCGATCCTAAACTGATTTCGTGATTCTCCCTTCTAATATTCTTTTGATTCAGGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGTTCGTTCTCTGTCTGTTCCTTTAATTTTGCTTTGATCGGTTTTTTGTTATTTTCTATGTTTTCGTTGATATGAAATTTTCGGCATTGCGACCTCTTGTGAGTTAACTGGCATAGGGATATGAAAGTTTTTTTTTTTTTTTTTTGTGCGGCGGGATTGATATTTGCGGGGACTTTTCTTACTTGCTTTTTTCGTGTAAACTGTCTTGCGTTACTTGAGGAAACATTAAAATGTGGTTTGTATTTGATAGTAGTAATTTTGAAATGGTTAAAACCACTTTTTGTTGTGTTTAAAATCGCTGCAAAACACATCTTTAATCACTCAAAATAGATTCAATGTTCAAATTGATTTTAAATGATCAAAAGCATTTTCTGAGTGACTTGAAAAAGAGAAAAGTGATTTTAACCATTTTCTCTGGGATGAACATTGTTGATTGATCATTGAATATCGTCTGCTTACTGCATCTGGAAATGCGTGGATTTCACTAATAATTGTTATGATATCCTAGGAATCAAATATGATCATTTCCCAGATTCAAATCGTGTTAACTTGGAAGTCATGTAGGATATCCCATATTTAAGGATTATGTTGCCCCCAATTTGAGTTTCAAATAAGTAAGCATTCTCTTATAGAAATCATTTTCCTATACAATTTAACCATTGAGTTGCTTGTCTTATATATGTGCATAGCTCTCTCCTGATCCATGGAGTTCATTAAAAAAAAACTCAAGTTTGAAGACTGACGTTAGACGGTGGTGAGAAACTTATGAGAATTAACTTATTAAACTCAGATTAGGACTTAAAGATCCAAGTATGTTCTAGGAAATTGGGTTAAACTGAAATCTGAGAGCAGAGATTCAAGCTGGGAAAGGTCTACATGTATAGAACGACATGATTTTAGTCGGCAAGCCATGATTCCTATGCTATTGATCTATTGCTTATGGATCCTTTTTTGGGGTGGATTTGCAGGAAGATCTTGACACAATAGACAAACTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGGTAAGCACAACCATGAATGAATTTGATCATGTGGCATGGCAGTTAATTAAAGTAAGGTTGCAAAATTGAATGCTGTTACTGATTATGAAATATGGTAATGGTGAAATTGACTTCTCTTATGTTCTTGGTCTTCTGCTTTAATCTGCCTGTAGATATCAGGCATGCTTTCTGTTTATTTGAAATGTCACTATAGCGTTGATTTTGTCTTCCTCCCTTTTGAATTACAGAAATTGTATTGCAGAAACAATATGAACAAGATATTACGAGTTTAATTAAAAAAACAAAAAACAATAGCCTAGGGGTTTTTCTCCATTTTTAGAATCAGTTTAGTAAGTTGGAATTATAGCAACTAGTGACAAATTATAGATTTTCCTTCAGAGGTTGGTTCTTGACTATCTAAGACTTTAAGATGCCTACACGAAATTTTAGATATTATTTATTTTTGTTGGAAGGAGTTTCGCCCTACCCCTGGCCCATAGATTGTTCCTTCTTTTGTTTTAGTTCAATATCGTTTCTTATCCCAAAAAAAATTATTTATTTATTTTTAAATGAGAAACAAAGGATGTATTATAAACACAAAATGGAGAACAACTGTAGGATGGGGGGAAGGAGAGATCCACGCCTGAAAAGAAGCAACGATATTGTTACAAAAGTTCATATGGTTTGAACACCACCAAGTAGTATGCTACTATGCTGTACATAAAAAGGAATCCACTGAAGAAAACCTATTTTGAAAGATTTTTCCATTTCTCTCCTTCCTTATCATTATTTGATTCATCCACAAAATAGCCCCACCGCACTATTCCATAAAAATTTGGCCTTCCCTTTAAAGGACATTCCTCCTAGGTTCTTCATCAGTCACCTATCAATCTTCTTAGGGAGACATGCAGCCAAATCTAAAACTTGAAAGAGGGAAAACCATGCTGAACAGGAGAACAGGCAGTGGGGAAGCATGCGATCCAAAAGATTCTCCCTCCTTCAAGCACAAATAGCAAATTGATGGAGACTTTCTCTGCAACTTTTCCGAAGTATTAAGGCTTTTATGCATGACCAACCAAATCAAGACCTTAACTTTCTTAGCCAGCCTTCTCTTCCAGTGTAGTCTACCATGGGAGTTTTAATTTTAGCGTTCAACTTAGTCCGGAAAGTTGGTGGTGAAATATTATGGCGTTCTGTCTTTACTAAAAATATGTTGTGTTTATTTTGCAATAACTTCTCCATTAGAATGAAATAAAATTAACACCTGTTCCAGCAATGGCATTGTTATCAGTTTATTGTTGTTTATTTTATTACTTTTATATATCAACAATGTTACTTTGATAATTTTTTTAGATTCCCTTATCATAAATAATATTAATAATTAAGTTTATATACTTATTTAATATGAATATTGCTTAATAAATTGAATATTGTTTTACTAAAATTTTATATTGTTTTTTTAAGAAGAAACAACTTCGATTTCCCAGAATTAGTTGTTAAATTGTTTGTTTTTTCTATTTAGTGGGACCTTTAGATTAGAAGGAGTGAAGATTGCTGTGCTTATTGCCAAACAAGACAACTTGGTGAGAGAGATTAATAGGATTGTGATCTCAAAAGTCTAAGGAAGGGAGAAATAATGAAATGGACTATAGATGCCTTGCAATCATGGAAACCTTGGTGTCCTAGATGCTTAGTGTCCTTAATTTCTATAAATTAGACCCAGGCATATGGATACCTATCCCCTTAACGTTCATGATTACATCAAAGGAACTAGCACCGTATAGGGTTATGAGGATGTCTGCATCACAAGATCTTCAGTCCAACATGTGTGTCACCCTTTGCAAAAAGTTTTTGTGAAATATATTTTTCCTTTTTATGAAGTATGATGGTCTTCGATGAGTTTGGAACAAGAAATCCTCATTTGTAGTTGTCTGTTAGTTAAGTTGTAGGCATGCGTATGTAAAAACAATCTTCCCCCCACTCCCCAGATGGTTGCCAGCTCCTACCTAAAACTTTGAAGTATCATTTCATTGTTTGTTTTTTCTGTTCTGCTCAGAACAAGGCTATATATGCAGTTATGAATCCTAATTTTTATTTTTCCTTTACTCTGTAGTTCCTTGGGCTCCCGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTGAAGGGGTAAGTTTCCTTTAGAAGATTGTTCACATTTTATTTTTTTTTTCTCATAAAAATTTTAAAATCTTCATTCCTTCTCTTCTCTTCACTCAACTTTTTTTCTTTTTTCTTTTCTTATATTTATTATTATTATTATTATTATTATTATTATTATTTTATTTGCATATATCTTTCATCATCAACACCCTTACTTAAACAAGATCTGTTCTATAGATTGTACAATTGTGTTTATAAGTAGAACTATATAGCATCATCTTTAACCACCTCATCCTCCGTGCTTTATAAGAGAGGTAATGATGTAGAAACTACATAATAGTTATAATGATCTGTGGTTGGTTTATTGCTCAAATGAAATGTCTAATAATCACAGTTATGAAATATGTATATTTGTTTTCACGTGGCCTTTCCCCATTCTTGGAGGGAGCACATTTAAATGGAAAAGTGGAAGTACTTTTCCCAGCGATTAGATCATAGGAACTCAGCTCCATGCTCTTTCCCTTTTTTCTTCTTTCGCTGTTTTAATCCTATCATTTGCTGCGGGCTTGAGTTCTCTACTCTTTGTCCCTTTGATAAATTTGTATGCAATTGTTAGAGTGTAATCTCATCCGTCAATATGGCACCAAAATCTATGTGTTGTGATACAGATTGAGATCATATATGACTACGGGCGGGAAGATCACTGAAATCTTCTATATCATGGTAATAAATAAAGGTAAGCTTACATTTGGCTGCTGATAGTAACGAATCTGAATGCAGCTCAAATTGAACATTAGTCTTTTTTCATTTCTTCAATGAGAAGGTTTTAGAAAAAAGTGTGTTTTGTTGAGAAGACTATGGTTCTTTACCGGGTGAAACATTTCTCTCTCAAAAGAATCCATTTTGTCTGATGTTGAAAACAATCTTCAAAAAGTTACTCTATTGTTGTGAAGTGTTCAAGCTGTTTCCTAAAGCAACCATTTACGTAATATTACAATTAACAATCTTTTTCGATATACAATGACCCAAGTTTTGGATACTTTTTGCTTGAACATCTAATGTGGATCCAATGCTTCGACTATTGCAGGTTGAAATGGTTGGTGGCTTTGTGAGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTGAATGAACACAAATTATAGTGATTCCTTGTTGATTTGCTTTCTACTTTTTGTTCAGATATGCAAATTTGACATAGAAAAAATCACCATTGGAACGGTGTGTGATAGTACAACTTTTGGTTAATTTAAGCGTTCATCCTTCGCATGTACCTATGTTTTTGTGAATGTGGCTAATTTTTCTTTTTCCTTTTGGTGGGGACTTTAGCTATGGAAGTCTTCAGGATGAGCAGTTTGCCTCATTGCTTGTAATTGCAGCAGATGTTGAAATTGTG

mRNA sequence

TTGTTGGTCCAAATCGAAACCACAAACAACACAGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGACACAATAGACAAACTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCCGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTGAAGGGGTTGAAATGGTTGGTGGCTTTGTGAGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTGAATGAACACAAATTATAGTGATTCCTTGTTGATTTGCTTTCTACTTTTTGTTCAGATATGCAAATTTGACATAGAAAAAATCACCATTGGAACGGTGTGTGATAGTACAACTTTTGGTTAATTTAAGCGTTCATCCTTCGCATGTACCTATGTTTTTGTGAATGTGGCTAATTTTTCTTTTTCCTTTTGGTGGGGACTTTAGCTATGGAAGTCTTCAGGATGAGCAGTTTGCCTCATTGCTTGTAATTGCAGCAGATGTTGAAATTGTG

Coding sequence (CDS)

ATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGACACAATAGACAAACTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCCGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTGAAGGGGTTGAAATGGTTGGTGGCTTTGTGAGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTGAATGA

Protein sequence

MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVEDLDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDDKRSSLMCKLE
Homology
[Close]
BLAST of ClCG11G003860 vs. Swiss-Prot
Match: NDUB9_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 90/108 (83.33%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS  STA Y ARRAAQKERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F  N+ VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMV 109
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP G+E+V
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIV 108

[Close]
BLAST of ClCG11G003860 vs. Swiss-Prot
Match: NDUB9_BOVIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-10
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F S+  YL  +    ++V  LY+RAL+   +W +HR  +   A  LR RF+ +K+ +D
Sbjct: 1  MAFLSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

[Close]
BLAST of ClCG11G003860 vs. Swiss-Prot
Match: NDUB9_MOUSE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F +   YL  +    ++V  LY+RAL+   +W +HR  +   A  +R RFE +K+ +D
Sbjct: 1  MAFCAPPAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  + + +HP PYI P +PGG+ F R
Sbjct: 61 MMRATQLLREAEEEFWQNQHPQPYIFPDSPGGTSFER 93

[Close]
BLAST of ClCG11G003860 vs. Swiss-Prot
Match: NDUB9_PONAB (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-09
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F ++  YL  R    ++V  LY+RAL+   +W V R  +   A  +R RFE +K+ +D
Sbjct: 1  MAFLASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]
BLAST of ClCG11G003860 vs. Swiss-Prot
Match: NDUB9_GORGO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F ++  YL  +    ++V  LY+RAL+   +W V R  +   A  +R RFE +K+ +D
Sbjct: 1  MAFLASGRYLTHQ----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]
BLAST of ClCG11G003860 vs. TrEMBL
Match: A0A061E0K2_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-52
Identity = 98/117 (83.76%), Postives = 108/117 (92.31%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS ++TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+FEANKHVED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+E+   + R D+D
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDND 117

[Close]
BLAST of ClCG11G003860 vs. TrEMBL
Match: A0A0A0LLB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-51
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MSF STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEA++HVED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVD 116
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R D
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGRED 115

[Close]
BLAST of ClCG11G003860 vs. TrEMBL
Match: A0A151TD23_CAJCA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=KK1_019550 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.0e-51
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY DAS+LRERFE N+HVED
Sbjct: 1   MSMASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
            DTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP+G+E+V  + R ++D
Sbjct: 61  PDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREEND 117

[Close]
BLAST of ClCG11G003860 vs. TrEMBL
Match: W9R9D4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004478 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.9e-51
Identity = 98/117 (83.76%), Postives = 105/117 (89.74%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS  STAGYLARRAAQKERVRILYRRALK+TLNWAVHRHLFY DASDLRERFEANKHVED
Sbjct: 1   MSAVSTAGYLARRAAQKERVRILYRRALKNTLNWAVHRHLFYSDASDLRERFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTID+LIAD E SYN WRHPDPYIVPWAPGGSKF RNPTPP G+E+V  + + D+D
Sbjct: 61  LDTIDRLIADAEESYNMWRHPDPYIVPWAPGGSKFHRNPTPPSGIEIVYDYGKEDND 117

[Close]
BLAST of ClCG11G003860 vs. TrEMBL
Match: A0A0D2RT13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-50
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRE+FEANKHVED
Sbjct: 1   MSGASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTIDK+I  GEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R ++D
Sbjct: 61  LDTIDKMIDAGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEILYDYGREEND 117

[Close]
BLAST of ClCG11G003860 vs. TAIR10
Match: AT4G34700.1 (AT4G34700.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 193.7 bits (491), Expect = 6.7e-50
Identity = 90/108 (83.33%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS  STA Y ARRAAQKERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F  N+ VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMV 109
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP G+E+V
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIV 108

[Close]
BLAST of ClCG11G003860 vs. NCBI nr
Match: gi|659122203|ref|XP_008461019.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 214.9 bits (546), Expect = 8.0e-53
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEAN+HVED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEANRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVD 116
           LDTIDKLI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R D
Sbjct: 61  LDTIDKLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGRED 115

[Close]
BLAST of ClCG11G003860 vs. NCBI nr
Match: gi|590685156|ref|XP_007042025.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-52
Identity = 98/117 (83.76%), Postives = 108/117 (92.31%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS ++TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+FEANKHVED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+E+   + R D+D
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDND 117

[Close]
BLAST of ClCG11G003860 vs. NCBI nr
Match: gi|702404893|ref|XP_010066221.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 211.8 bits (538), Expect = 6.8e-52
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 5   STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVEDLDTI 64
           +TAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEANK VEDLDTI
Sbjct: 8   TTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLRERFEANKRVEDLDTI 67

Query: 65  DKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           D+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP G+E++  + R D+D
Sbjct: 68  DRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGIEIIYDYGREDND 120

[Close]
BLAST of ClCG11G003860 vs. NCBI nr
Match: gi|449464842|ref|XP_004150138.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MSF STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEA++HVED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVD 116
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R D
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGRED 115

[Close]
BLAST of ClCG11G003860 vs. NCBI nr
Match: gi|1012353749|gb|KYP64937.1| (NADH dehydrogenase [ubiquinone])

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY DAS+LRERFE N+HVED
Sbjct: 1   MSMASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
            DTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP+G+E+V  + R ++D
Sbjct: 61  PDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREEND 117

The following BLAST results are available for this feature:
BLAST of ClCG11G003860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUB9_ARATH1.2e-4883.33NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thali... [more]
NDUB9_BOVIN3.8e-1034.02NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDU... [more]
NDUB9_MOUSE6.4e-1034.02NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=N... [more]
NDUB9_PONAB3.2e-0934.02NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=N... [more]
NDUB9_GORGO1.2e-0832.99NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla g... [more]
BLAST of ClCG11G003860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061E0K2_THECC2.1e-5283.76LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 P... [more]
A0A0A0LLB9_CUCSA2.3e-5184.35Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1[more]
A0A151TD23_CAJCA4.0e-5182.91NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=... [more]
W9R9D4_9ROSA8.9e-5183.76Uncharacterized protein OS=Morus notabilis GN=L484_004478 PE=3 SV=1[more]
A0A0D2RT13_GOSRA1.2e-5082.05Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1[more]
BLAST of ClCG11G003860 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34700.16.7e-5083.33 LYR family of Fe/S cluster biogenesis protein[more]
BLAST of ClCG11G003860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122203|ref|XP_008461019.1|8.0e-5386.96PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|590685156|ref|XP_007042025.1|3.0e-5283.76LYR family of Fe/S cluster biogenesis protein [Theobroma cacao][more]
gi|702404893|ref|XP_010066221.1|6.8e-5286.73PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|449464842|ref|XP_004150138.1|3.4e-5184.35PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|1012353749|gb|KYP64937.1|5.7e-5182.91NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0015992 proton transport
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0045271 respiratory chain complex I
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G003860.1ClCG11G003860.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 19..72
score: 2.
NoneNo IPR availablePANTHERPTHR12868NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNITcoord: 5..108
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G003860Csa2G252030Cucumber (Chinese Long) v2cuwcgB104
ClCG11G003860MELO3C023357Melon (DHL92) v3.5.1mewcgB081
ClCG11G003860Cla016610Watermelon (97103) v1wcgwmB107
ClCG11G003860Cla97C11G210610Watermelon (97103) v2wcgwmbB065
ClCG11G003860Bhi10G001547Wax gourdwcgwgoB167
ClCG11G003860CSPI02G12740Wild cucumber (PI 183967)cpiwcgB111
ClCG11G003860Cucsa.109110Cucumber (Gy14) v1cgywcgB155
ClCG11G003860CmaCh20G008060Cucurbita maxima (Rimu)cmawcgB477
ClCG11G003860CmaCh02G003610Cucurbita maxima (Rimu)cmawcgB517
ClCG11G003860CmoCh02G003640Cucurbita moschata (Rifu)cmowcgB515
ClCG11G003860CmoCh20G008140Cucurbita moschata (Rifu)cmowcgB476
ClCG11G003860Lsi10G004210Bottle gourd (USVL1VR-Ls)lsiwcgB039
ClCG11G003860Cp4.1LG16g02720Cucurbita pepo (Zucchini)cpewcgB251
ClCG11G003860Cp4.1LG05g12860Cucurbita pepo (Zucchini)cpewcgB634
ClCG11G003860CsGy2G012820Cucumber (Gy14) v2cgybwcgB103
ClCG11G003860MELO3C023357.2Melon (DHL92) v3.6.1medwcgB080
ClCG11G003860Carg27199Silver-seed gourdcarwcgB0797
ClCG11G003860Carg25955Silver-seed gourdcarwcgB0422
ClCG11G003860CsaV3_2G015290Cucumber (Chinese Long) v3cucwcgB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G003860Bottle gourd (USVL1VR-Ls)lsiwcgB085
ClCG11G003860Cucumber (Gy14) v2cgybwcgB495
ClCG11G003860Melon (DHL92) v3.6.1medwcgB186
ClCG11G003860Silver-seed gourdcarwcgB0307
ClCG11G003860Cucumber (Chinese Long) v3cucwcgB558
ClCG11G003860Watermelon (97103) v2wcgwmbB068
ClCG11G003860Watermelon (Charleston Gray)wcgwcgB063
ClCG11G003860Cucumber (Gy14) v1cgywcgB642
ClCG11G003860Cucurbita moschata (Rifu)cmowcgB455
ClCG11G003860Wild cucumber (PI 183967)cpiwcgB563
ClCG11G003860Cucumber (Chinese Long) v2cuwcgB534
ClCG11G003860Melon (DHL92) v3.5.1mewcgB190
ClCG11G003860Watermelon (97103) v1wcgwmB101
ClCG11G003860Cucurbita pepo (Zucchini)cpewcgB229