Carg27199 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27199
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Location	Cucurbita_argyrosperma_scaffold_351 : 28836 .. 32843 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACAACAAAGTGATTCCAAAGCCATTTCTAGAGAGAAGGAGAGAGAGATGAGCATTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAGGGAGAGGGTTCGGATTCTTTACCGGCGAGCTCTCAAAGATACTCTCAACTGGGCCGTCCATCGTCATCTCTTTTACCGAGATGTATACAATTTTTTTGCTTCTATTTCCTCCTCTGTTTTGAGATTTCTTCGATCCTAAACTGATTTGGTCATTTTTTTCTAATCGAGCTTTGATTCAGGCTTCCGATCTTCGGGAGAGATTCGAGGCAAACAAGAACGTGGTGCGTTCGCTATTTGTTCCTTCAATTTTTGTTTTTTGTATCGATTTTTTTTTTTGCTCTTTTCTGCATTGCGATCTATTTTGAGTTAGTTGACCTAGGGGAGCTGTGGTCTAATTTACTTGCGTTGAGTTTTCTTACGAGCATTTGGCGTTTAAATTGTTTTATGATACTTGATGAAACATTAAAATGTGGTGCTTTAGTCTCTTTATTCTCTGGGGTGAGCATTGTTGATTGATCCTTGAATTTCATCTGTTTACTGTATTTGGAAAACTGTGTATTTTACAAACGAAATGTTATGATTTGCTGGGAATTGATTAGGATGATCGTCCATATTCAAAGGATTTGTACTTGGAAGTTGTGTAGGCTGTCCTTTATTTATTTCAATAACATGTGGGAGTGAAGATTCAGGATATATGTCTTAAGCTATTTTCAAGGCAACTGAAGGATGCCCCTTATGTAAGGATTATATTGTCTCAATTTGTGTTTCAAATAAGTAAGCCTTCTCCTATACGATTTATATTCCTAAAAAATTGAACAATTGAATAGGTTTTCTTATGTATGCATAGTCTTCTGCTCCATGGATTTAAAGTAAGAGGACAAGTTTGAAAATTGATGTTGGACAGCACTGACAAACTTATCGGAATTAACTTCTAATTATATTTGTGACCTGCGAGCTTTGAGGGGTTTCAATAAACTCAGAGTAGGACTTAGAGATCCAATTATGTTTTTGGAATTTTGTTTAAATCTAGGATCTAGATTAAGGGAGTGTTCAAGCTCTGAATATGTTGCAAGGTCTACATGTATGGACTGACCAGATTTTAGCTAGCAAGCTATAAGTTCAGTTTCTTTTCTATTGATCTATTCTGTCATGGATCCTTCTTTGGGTTAATTTTCAGGAAGATCTTGACACAATAGACAAGCTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGGTAAGCACAATCATAAATGGGTTAGATCATGTGTCAGTTAACAAAAGAAAGCAACTCTACGTGCTGCAAAATTGAATGCTGTTACTGATTATGTAGTATGTTAATAATGAAATTGACTACCGTTAAATTTTTGGTATTCAACTTTAATCTGCCCCGTGTATGGTTTCTGTTTATTTTCAATACTACTAAAATTTTGTTTTTCTTTTCTTCCCTTTTGAATAATAGAAATAGCATTATGGAAACAATACGAACATAATATGTGAGGTTAGTGAAAAAAAAAACCTTTGATTTTTCTCATCCTAAGAATCAATTTAGTAGGTTGGAATTATAGTAACTAGCCACCACATCTTGGCTTTTCCTTTAGGGGTCGTTTCTTCAGTATCAAATAATCTATGATGCCTGCAACTTTGGATGCTTGATAGTGAAAGATTATGGTTTTCAATATTTATTAAGATGATTGCAAATAATAAACCCTTGCGTTTGTTTTGCAATAACTAACCCATTAGATTGAAAAAAAAAAAATCAACTTTGTTCTGACCATGTCATTGTTATTAGTTTATTTTTATTTATCCAATGTATCAAATTTGTCAATTTACCCTTTTACTTTCTCTTTTAAATCAACTTATTTACATTAATTTAATATTTCAATTAATTTATATTAGTTTTAGATTCTCCTGTGAAATATTATTTTAACAGTTATGTTTGTGTACTTTTCATATGAATATAGTTTTCAAACATGATGTATTGTTGAATTCCTAGAATTAGTTACTGTAGAATTAGGATTATTATTTCAAAAGTCTAATGAAGGGAAGAGTATGGACTAGATGCCATACCATCATGGATGCCTAGGTATCTTAGATTCTCAGGATCTTTTGTTACTACCAATTAGACCCAATCATATGAATACCCATCCCCTTAACATCCCTGATTACATCAAAGTAACCAGCTCCATATTGGGTTATGAGGATATTTGCTAAATAAAAGATCTTCAGTCCCATGTGTGCCAACCTCTGCAAAAAGCTTTTGTGAAATAGTTTTCTTTTTCATAGAGTATCATGGTCTTCAATGAGTTTAGAACACAAGTCGAAAATTCTGGAATATACTTGTAGATGATAATTAGTCAAGTTGCAAACATATTTATCTAATAAGGCTTCCTTCCCCCCTTCCAACCCACACATGGTTGCCTCCTGTTATTCAACTTTTTGTCACAATTTCATGTCTGTTATTTCAATCTTGCTTTGATGTACTGTATTTGTGCAGCTATTTATCCTTTAATATTTTTTCCTTTTCCTCTATACTGCAGTTCCTTGGGCTCCAGGGGGTTCTAAGTTTACGCGAAACCCAACTCCACCTTCTGGGGTAAGTTTCTTTTAAGAAGGTTCACTTATTCTTTTAATTTTTGTTTTTTTTCTAAATATTCATTCCTTCTCTTCATTTCTTCACGATGTATTTTATTATTTGCATATATCTAGTTTTTATGCATTACAGAATTATCTAGCATCGTTAACCACCTTATCATTAGGACTATTTAAGAGTGACCATTTTATAGAGGGCATAACAATTATAAGCGCTCTGCATTTGGCTCATTGCTCTAAGCATAGGTCAACTAGCATGAGTCGTGTGTCTTCAACCAAGAGGTTAGAGGTTCAAATGAAACGTTAAAAAAGAAACACAACGTTGTGACACATGTATTTTGTTCCCATGTGACATTGTTTTTAAAAAATATAATGCACTTGTGTAAGTTAGACTCTCTTTGCCCTACACTAGGAGCACCTGAAAATGGAAAAAGAGGACAATAAGAGCACAATAATATTCTTTGGCTGTTTTATTCTTGTCATGTGCTGATGGCTTGAGATCTCTACTTTGACCCTTGGATTAATTTTTATGTACTGTTAGACTGTAGTATCGAACAGATTCACTGACGCCAGCATCTATGTTTAATGGTACAGGTTGAGATAATATATGACTATGGACGGGAAGATCACTGAAATCTTCATTTTCTGGTAATGAATAAAGGTAAGCTTACGTTTAGATGCTGATAGCAACAAAGCCTATTTTCCCCAATCTGAATGCAACTCGAGTTCGATTGTTATTGGCTTATATTATTGTACGTAATTCTGACCCGTTGGTAATATTGTATAGAAATTATTAAACTGAGAAGTTAAGAGTCCTTTACCGAGTGAAATTTGCGAAACTCATATGACCTGATGTTACTGAAAATAATTTTCCAAAGATGAAAAACAGAGATATTATTAGCCTACTGTTTTGAAGCGCTCTCACTTTTTTCCAAGCAACCATTTAAGTAATACTACAATTAACAATAGTTTTCAGTAATTATATTCACTCAAGTCTTGGATATTTTTTGGTTGGAGTTCTAATATAGAAAGCTATATCTTGACTGGTGCAGGTTTTTAAATGGTTTGTTGCTTCGTCTGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTTGAATGAACACAAATCATAGTTATTCCTTGTTGATTTGCTTTCTACTTTTTCTTAGATATGCAAATTTGGCATAGAAAAATCACCATTGGAACGGTGAATGATGTTGCAACTCTTGGTTAATTTAAGCGTTCGTTCATCATTTGCATGACATGTCTGGAGCTATCCCTTGTTCATTGTTGCACTGATAAAACCGGCCTTTCATTTTGACTTAACGAAACGACTTCGTTATATGTT

mRNA sequence

ACAACAACAAAGTGATTCCAAAGCCATTTCTAGAGAGAAGGAGAGAGAGATGAGCATTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAGGGAGAGGGTTCGGATTCTTTACCGGCGAGCTCTCAAAGATACTCTCAACTGGGCCGTCCATCGTCATCTCTTTTACCGAGATGCTTCCGATCTTCGGGAGAGATTCGAGGCAAACAAGAACGTGGAAGATCTTGACACAATAGACAAGCTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCAGGGGGTTCTAAGTTTACGCGAAACCCAACTCCACCTTCTGGGGTTGAGATAATATATGACTATGGACGGGAAGATCACTGAAATCTTCATTTTCTGGTAATGAATAAAGGTTTTTAAATGGTTTGTTGCTTCGTCTGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTTGAATGAACACAAATCATAGTTATTCCTTGTTGATTTGCTTTCTACTTTTTCTTAGATATGCAAATTTGGCATAGAAAAATCACCATTGGAACGGTGAATGATGTTGCAACTCTTGGTTAATTTAAGCGTTCGTTCATCATTTGCATGACATGTCTGGAGCTATCCCTTGTTCATTGTTGCACTGATAAAACCGGCCTTTCATTTTGACTTAACGAAACGACTTCGTTATATGTT

Coding sequence (CDS)

ATGAGCATTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAGGGAGAGGGTTCGGATTCTTTACCGGCGAGCTCTCAAAGATACTCTCAACTGGGCCGTCCATCGTCATCTCTTTTACCGAGATGCTTCCGATCTTCGGGAGAGATTCGAGGCAAACAAGAACGTGGAAGATCTTGACACAATAGACAAGCTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCAGGGGGTTCTAAGTTTACGCGAAACCCAACTCCACCTTCTGGGGTTGAGATAATATATGACTATGGACGGGAAGATCACTGA

Protein sequence

MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVEDLDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH

Homology

[Close]

BLAST of Carg27199 vs. NCBI nr
Match: XP_022948212.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita moschata] >XP_022948213.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MSISSTAGYLARRAAQRERVRILYRRALKDTL WAVHRHLFYRDASDLRERFEANKNVED
Sbjct: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLTWAVHRHLFYRDASDLRERFEANKNVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH
Sbjct: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 116

[Close]

BLAST of Carg27199 vs. NCBI nr
Match: XP_023532128.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MSISSTAGYLARRAAQ+ERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED
Sbjct: 1   MSISSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           +DTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPP G+EIIYDYGREDH
Sbjct: 61  VDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYDYGREDH 116

[Close]

BLAST of Carg27199 vs. NCBI nr
Match: XP_023007340.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 1.6e-59
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MSISSTAGYLARRAAQRERVRILYRRALK+TLNWAVHRHLFYRDASDLRERFEANKNVED
Sbjct: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPP GVEIIY+YGREDH
Sbjct: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 116

[Close]

BLAST of Carg27199 vs. NCBI nr
Match: XP_022146081.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Momordica charantia])

HSP 1 Score: 232.6 bits (592), Expect = 6.6e-58
Identity = 109/116 (93.97%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS SSTAGYLARRAAQ+ERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANK+VED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTIDKLIA GEAS+NKWRHPDPYIVPWAPGGSKFTRNPTPP+G+EIIYDYGREDH
Sbjct: 61  LDTIDKLIAHGEASHNKWRHPDPYIVPWAPGGSKFTRNPTPPAGIEIIYDYGREDH 116

[Close]

BLAST of Carg27199 vs. NCBI nr
Match: XP_022944756.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like isoform X1 [Cucurbita moschata] >XP_022944757.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like isoform X1 [Cucurbita moschata] >XP_022986637.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like isoform X1 [Cucurbita maxima] >XP_022986638.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like isoform X1 [Cucurbita maxima] >XP_022986639.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like isoform X1 [Cucurbita maxima] >XP_023511797.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 7.3e-57
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS SSTAGYLARRAAQ+ERVRILYRRALKDTLNWAVHRHLFYRDASDLRERF+ANK+VED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LD ID++IADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPP G+EIIY+YGREDH
Sbjct: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 116

[Close]

BLAST of Carg27199 vs. TAIR10
Match: AT4G34700.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 204.9 bits (520), Expect = 2.7e-53
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STA Y ARRAAQ+ERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F  N++VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP+G+EI+Y+YG ED+
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

[Close]

BLAST of Carg27199 vs. Swiss-Prot
Match: sp|Q945M1|NDUB9_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana OX=3702 GN=CIB22 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.8e-52
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STA Y ARRAAQ+ERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F  N++VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP+G+EI+Y+YG ED+
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

[Close]

BLAST of Carg27199 vs. Swiss-Prot
Match: sp|Q02369|NDUB9_BOVIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus OX=9913 GN=NDUFB9 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1  MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
          M+  S+  YL      +++V  LY+RAL+   +W +HR  +   A  LR RF+ +KN +D
Sbjct: 1  MAFLSSGAYL----THQQKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

[Close]

BLAST of Carg27199 vs. Swiss-Prot
Match: sp|Q9CQJ8|NDUB9_MOUSE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus OX=10090 GN=Ndufb9 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 17 RERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVEDLDTIDKLIADGEASYN 76
          +++V  LY+RAL+   +W +HR  +   A  +R RFE +KN +D+    +L+ + E  + 
Sbjct: 13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72

Query: 77 KWRHPDPYIVPWAPGGSKFTR 98
          + +HP PYI P +PGG+ F R
Sbjct: 73 QNQHPQPYIFPDSPGGTSFER 93

[Close]

BLAST of Carg27199 vs. Swiss-Prot
Match: sp|Q0MQE8|NDUB9_PONAB (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii OX=9601 GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-09
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 1  MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
          M+  ++  YL      R++V  LY+RAL+   +W V R  +   A  +R RFE +KN +D
Sbjct: 1  MAFLASGAYL----THRQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]

BLAST of Carg27199 vs. Swiss-Prot
Match: sp|Q9Y6M9|NDUB9_HUMAN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens OX=9606 GN=NDUFB9 PE=1 SV=3)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 17 RERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVEDLDTIDKLIADGEASYN 76
          +++V  LY+RAL+   +W V R  +   A  +R RFE +KN +D+    +L+ + E  + 
Sbjct: 13 QQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFW 72

Query: 77 KWRHPDPYIVPWAPGGSKFTR 98
            +HP PYI P +PGG+ + R
Sbjct: 73 YRQHPQPYIFPDSPGGTSYER 93

[Close]

BLAST of Carg27199 vs. TrEMBL
Match: tr|A0A1S3CDS7|A0A1S3CDS7_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cucumis melo OX=3656 GN=LOC103499726 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.4e-56
Identity = 105/116 (90.52%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS SSTAGYLARRAAQ+ERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEAN++VED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEANRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTIDKLI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP+G+EIIYDYGREDH
Sbjct: 61  LDTIDKLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]

BLAST of Carg27199 vs. TrEMBL
Match: tr|A0A2N9FNK3|A0A2N9FNK3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16724 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 103/116 (88.79%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS++STAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFY+DAS+LRERFEANK VED
Sbjct: 1   MSVTSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYQDASELRERFEANKKVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTID+LI DGEASYNKWRHPDPYIVPWAPGGSKFTRNP PP+G+EI+Y+YGRED+
Sbjct: 61  LDTIDRLIDDGEASYNKWRHPDPYIVPWAPGGSKFTRNPAPPAGIEIVYNYGREDN 116

[Close]

BLAST of Carg27199 vs. TrEMBL
Match: tr|A0A2I4GBV8|A0A2I4GBV8_9ROSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like OS=Juglans regia OX=51240 GN=LOC109006539 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.5e-55
Identity = 101/116 (87.07%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS++STA Y ARRAAQ+ERVRILYRRALKDTLNWAVHRHLFY+DASDLRERF+ANK+VED
Sbjct: 1   MSVASTAAYAARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLRERFDANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTID++IADGEAS+NKWRHPDPYIVPWAPGGSKFTRNPTPPSG+EI+Y+YGRED+
Sbjct: 61  LDTIDRMIADGEASHNKWRHPDPYIVPWAPGGSKFTRNPTPPSGIEIVYNYGREDN 116

[Close]

BLAST of Carg27199 vs. TrEMBL
Match: tr|A0A061E0K2|A0A061E0K2_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao OX=3641 GN=TCM_006779 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 102/116 (87.93%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS ++TA YLARRAAQ+ERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+FEANK+VED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PPSG+EI YDYGRED+
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDN 116

[Close]

BLAST of Carg27199 vs. TrEMBL
Match: tr|A0A0A0LLB9|A0A0A0LLB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252030 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 102/116 (87.93%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STAGYLARRAAQ+ERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEA+++VED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGVEIIYDYGREDH 117
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP+G+EIIYDYGREDH
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

The following BLAST results are available for this feature:

BLAST of Carg27199 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948212.1	1.8e-60	99.14	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita mosc...	[more]
XP_023532128.1	9.2e-60	96.55	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita pepo...	[more]
XP_023007340.1	1.6e-59	97.41	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like [Cucurbita maxi...	[more]
XP_022146081.1	6.6e-58	93.97	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Momordica charantia...	[more]
XP_022944756.1	7.3e-57	91.38	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like isoform X1 [Cuc...	[more]

BLAST of Carg27199 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34700.1	2.7e-53	81.03	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Carg27199 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q945M1\|NDUB9_ARATH	4.8e-52	81.03	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thali...	[more]
sp\|Q02369\|NDUB9_BOVIN	1.0e-09	34.02	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus OX=991...	[more]
sp\|Q9CQJ8\|NDUB9_MOUSE	1.3e-09	37.04	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus OX=1...	[more]
sp\|Q0MQE8\|NDUB9_PONAB	8.6e-09	34.02	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii OX=9...	[more]
sp\|Q9Y6M9\|NDUB9_HUMAN	2.5e-08	35.80	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens OX=9...	[more]

BLAST of Carg27199 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDS7\|A0A1S3CDS7_CUCME	2.4e-56	90.52	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cucumis melo OX=3...	[more]
tr\|A0A2N9FNK3\|A0A2N9FNK3_FAGSY	1.2e-55	88.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16724 PE=3 SV=1	[more]
tr\|A0A2I4GBV8\|A0A2I4GBV8_9ROSI	4.5e-55	87.07	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like OS=Juglans regi...	[more]
tr\|A0A061E0K2\|A0A061E0K2_THECC	1.0e-54	87.93	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
tr\|A0A0A0LLB9\|A0A0A0LLB9_CUCSA	1.0e-54	87.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252030 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006120	mitochondrial electron transport, NADH to ubiquinone

Vocabulary: **Cellular Component**
Term	Definition
GO:0005747	mitochondrial respiratory chain complex I

Vocabulary: **INTERPRO**
Term	Definition
IPR033034	NDUFB9
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27199-RA	Carg27199-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 19..72 e-value: 3.6E-7 score: 30.1
IPR033034	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	PANTHER	PTHR12868	NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT	coord: 5..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27199	Cla016610	Watermelon (97103) v1	carwmB0822
Carg27199	Csa2G252030	Cucumber (Chinese Long) v2	carcuB0838
Carg27199	MELO3C023357	Melon (DHL92) v3.5.1	carmeB0818
Carg27199	ClCG11G003860	Watermelon (Charleston Gray)	carwcgB0797
Carg27199	CSPI02G12740	Wild cucumber (PI 183967)	carcpiB0860
Carg27199	Cucsa.109110	Cucumber (Gy14) v1	carcgyB0940
Carg27199	CmaCh02G003610	Cucurbita maxima (Rimu)	carcmaB1145
Carg27199	CmaCh20G008060	Cucurbita maxima (Rimu)	carcmaB1144
Carg27199	CmoCh02G003640	Cucurbita moschata (Rifu)	carcmoB1115
Carg27199	CmoCh20G008140	Cucurbita moschata (Rifu)	carcmoB1114
Carg27199	Lsi10G004210	Bottle gourd (USVL1VR-Ls)	carlsiB753
Carg27199	Cp4.1LG16g02720	Cucurbita pepo (Zucchini)	carcpeB1155
Carg27199	Cp4.1LG05g12860	Cucurbita pepo (Zucchini)	carcpeB1156
Carg27199	CsGy2G012820	Cucumber (Gy14) v2	carcgybB0813
Carg27199	MELO3C023357.2	Melon (DHL92) v3.6.1	carmedB0829
Carg27199	CsaV3_2G015290	Cucumber (Chinese Long) v3	carcucB0863
Carg27199	Cla97C11G210610	Watermelon (97103) v2	carwmbB0857
Carg27199	Bhi10G001547	Wax gourd	carwgoB0961

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg27199	Carg25955	Silver-seed gourd	carcarB443

The following block(s) are covering this gene:

None