CmaCh02G003610 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G003610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
LocationCma_Chr02 : 1778931 .. 1783187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAGTGATTCCAAAGCCATTTCTAGAGAGAGAGAGAGAGAGAGATGAGCATTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAGGGAGAGGGTTCGGATTCTTTACCGGCGAGCCCTCAAAGAGACTCTCAACTGGGCCGTCCATCGTCATCTCTTTTACCGAGATGTATACAATTTTTCTTTTCCTTCTATTTCCTCCTCTGTTTTCAGATTTCTTCGATCCTAAACTGATTTGGTCATTTCTTTCTAATCGAGCTTTGATTCAGGCTTCCGATCTTCGGGAGAGATTCGAGGCAAACAAGAACGTGGTGCGTTCTCTATTTGTTCCTTCAATTTTTGTTTTTTGTATCGATTTTTTTGCTCTTTTCTGCATTGCGATCTATTTTGAGTTAGTTGACCTAGGGGAGCTGTAGTCCAATTTACTTGCGTTGAGTTTTCTTACGAGCATTTGGCGTTTAAATTGTTTTATGACACTTGATGGAACATTAAATTGTGGTTTGTATTGATAGTTTTGGATGGGTGCTTATATGGTGCTTTAGTCTCTTTATTCTCTGGGATGAGCATTGTTGATTGATCCTTGAATTTCATCTGTTTACTGTATTTGGAAAATTGTGTATTTTACAAACGAAATGTTACGATTTGCCGGGAATTGATTAGGATGATCGTCCATATTCAAAGGATTTGTGCATGGAAGTTGTGTAGGTTGTCCTTTATTTATTTCAATAACATGTGGGAGTGAAGATTCAGGATATATGTCTTAACCTATTAAGCTATTTTCAAGGCAACTGTAGGATGCCCCTTATGTAAGGATTATATTGTCTCCAATTTGTGTTTCAAATAAGTAAGCCTTCTCTTATATAATTTTGTATTCCTAAAAAATTGAACAATTGAATAGGTTTTCTTATGTATGCATAGCTTTCTCCTGCTCCATGGATTTAAAGTATAAAAAAAAAAGTTTGAAATTTGATGTTGGACTGCACTGTGAAACTTATCGGAATTAACTTCTAATTATATTTGTGACCTAGCGAGCTTTGAGGGGTTTCAATAAACTCAGAGTAGGACTTAGAGATCCAATTATGTTTTTGGAATTTTGTTTAAATCTGGGATCTAGATTAAGGGAGTGTTCAAGCTCTGAATATGTTGCAAGGTCTACATGTATGGACTGACCAGATTTTAGCTAGCAAGCTATAATTTCAGTTTCTTTTCTATTGATCTATGCTGTTATGGATCCTTCTTTGGGTTAATTTTCAGGAAGATCTTGACACAATAGACAAGCTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGGTAAGCACAATCATAAATGGGTTAGATCATGTGTCAGTTAACAAAAGAAAGCAACTCTACATGCTGCCAAATTGAATGCTGTTACTGATTATGTAGTATGTTAATAATGAAATTGACTACTGTTAAATTTTTGGTCTTCAACTTTAATCTGCCCCGAGTATGGTTTCTGTTTATTTTAAATACCACTAAAATGTTGTTTTTCTTTTCTTCCCTTTTGAATAATAGAAATAGCATCATGGAAACCATATGAACATAATATTTGTGAGTTTAGTGAAAAAAACCTATGATTTTTCTCATCCTAAGAATCAATTCAGTAGGTTGGAATTATAGTAACTAGCCACCACGTCTTGGCTTTTCCTTTAGGGGTCGTTTCTTCTGTATCAAATAATCTACGATGCCTGCAACTTTGGATGCTTGATAGTGAAAGATTATGGTTTTCAATATTTATTAAGATGCTTGCAAATAATAAACCATTGTGTTATTTTGCAATAACTACTCCATTAGATTGAAAAAAAGAAATCAACTTTGTTCTGACCATGTCATTGTTACTAGTTTATTGTTATTTATTCAATGTATCAAATTTGTCAAATTACCTTTTTACTTTCTCTTTTAAATCAACTTATTTACATTAATTTAATATTTTAATTAATTTATATTAGTTTTAGATTCTCTTGTGAAATAGTATTTTAACAGTTAAGTTTGTGTACTTTTTTCATATGAATATAGTTTACTTACATGATATATTGTTGAATTCCTAGAATTAGTTACTGTAATATTGTTTTTTTTTCCGTTGGTTGACTGGTGAGGATCTTGGATAGAAGTGGTAAGAGTTTTATTTTTTATTTTGCTTATTTTCCGAACAATAAAACTAGAGTGAGAGTGGTTAATAGGATTATTGTCTCAAAAGTCTAATGAAGGGAAGAGTAAGAAAATGGACTAGATGCCATACCATAATGGATGCCTTGGTATCTTAGATTCTCAGGATCGTTTAATACTACCAATTAGACCCAATCATATGAATACCCATCCATCCCCTTAACATCCCTGATTGCATCAAAGTAACCAGCTCCATATTGGGTTATGAGGATATTTGCTTCATAAAAGATCTTCAGTCCCATATGTGTGTTAACCTCTGCAAAAAGCTTTTGTGAAATGTAGTTTTCTTTTTCATAGAGTATCATGGTCTTCAATGAGTTTGGAACACATGTCGACAATTCTGGAATATATTTGTAGATGATAATTAGTCAAGTTGCAAACATATTTATCTAATAAGGCTTCCTTCCCCCCTTCCAACCCACAAATGGTTGCCTCCTGGTATTCAACTTTTTATCACAATTTCATGTCTGTTATTTCAATCTTGCTTTGATGTACTGTATTTGTGCAGCCATTTATCCTTTAATATTTTTTCCTTTTCCTTTATACTGCAGTTCCTTGGGCTCCTGGGGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCTGGGGTAAGTTTCTTTTAAAAAGAAGGTTCACTTATTCTTTTAAATTTTTGTTTTCTAAATATTCATTCCTTCTCTTCATTTCTTCACGATGTATTTTATTATTTGCATATATCTAGTTTTTATGCATTACAGAATTATCTAGCATCGTTAACCACCTTATCATTAGGACTATTTAAGAGTGACCATTTTATAGAGGCCATAACAATTATAAGCGCTCTGCATTTCGCTCATTACTCTAAGCATAGGTCAACTAGCATGAGTCATGTGTCCTCAACCAAGAGGTTAGAGGTTCAAATGAAATGTTCAAAAAGAAACACAACGTCGTGACATGTGTATATTTGTTCCCATGTGACATTGTTTTTTAAAAATATAATGCACTTCTGAAAGTTAGACTCTCTTTGCCCTACACTAGGAGCACTTGAAAATGAAAAAGAGGACAATAAGAGCACAATAATCTTCTTTGGCCGTTTTATTCTTGTCATGTGCTGATGGCTTGAGATCTCTACTTTGACCCTTGGATTAATTTTTATGTACTGTTAGACTGTAGTATCGAACAGATTCACTGACGCCAGCATCTGTGTATAATGGTACAGGTTGAGATAATATATAACTATGGACGGGAAGATCACTGAAATCTTCATTTTCTGGTAACGAATAAAGGTAAGCTTACGTTTGGATGCTGATAGCAACAAAGCCTATTTTCCCCAATCTGAATGCAACTCGAGTTCGATTGTTATTGGCTTATATTATTGTACGTAACTGACGAGTTGGTAATATTGCATGGAAATTATTAAACTGAAAAAATGAGTCCTTTACCGAGTGAAATTTGTAAAACTCATTTTACCTGATGTTACTGAAAACAATTTTCCAAAGATGAAAAACAGAGAAATTATTAGCCTACTGTTTCGAATCGCTCTCACTTTTTTTCTAAGAAACCATTTAGTAATACTACAATTAACAATAGTTTTCAGTAATTATATTCACTTAAAGTCTTGGATATTTTTTGGTTGGAGTTCTTATATAGAAAGCTATATCTTGACTGGTGCAGGTTTAAATGGTTGGTTGCTTCGTCTGAGTTGATGATAAAAGGAGCTTTTTGATGTGTAAACTTTGAATGAACACAAATCATAGTAATTCCTTGTTGATTTGCTTTCTACTTTTTCTTAGATATGCAAATTTGACGTAGAAAAATCACCATTGGAACGGTGAGTGATGTTGCAACTCTTGGTTAATTTAAGCGTTCATCCTTTGCATGACCTGCCTGGAACTATCCCTTTTTCATTGCTTCACTGACCTTTCGTTTTGACTTAACGAAACGACTTCAACTTAATAACAATCAATTGATTGAGTATTTTTCTATTCATGTGGGTTTCTGTTTTCCTCCCAAAGGATCTTGGCTGTCATTTCATTGGATGTTGAGACCGTGGCTACTTC

mRNA sequence

CTAAGTGATTCCAAAGCCATTTCTAGAGAGAGAGAGAGAGAGAGATGAGCATTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAGGGAGAGGGTTCGGATTCTTTACCGGCGAGCCCTCAAAGAGACTCTCAACTGGGCCGTCCATCGTCATCTCTTTTACCGAGATGCTTCCGATCTTCGGGAGAGATTCGAGGCAAACAAGAACGTGGAAGATCTTGACACAATAGACAAGCTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCTGGGGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCTGGGGTTGAGATAATATATAACTATGGACGGGAAGATCACTGAAATCTTCATTTTCTGGTAACGAATAAAGGTTTAAATGGTTGGTTGCTTCGTCTGAGTTGATGATAAAAGGAGCTTTTTGATGTGTAAACTTTGAATGAACACAAATCATAGTAATTCCTTGTTGATTTGCTTTCTACTTTTTCTTAGATATGCAAATTTGACGTAGAAAAATCACCATTGGAACGGTGAGTGATGTTGCAACTCTTGGTTAATTTAAGCGTTCATCCTTTGCATGACCTGCCTGGAACTATCCCTTTTTCATTGCTTCACTGACCTTTCGTTTTGACTTAACGAAACGACTTCAACTTAATAACAATCAATTGATTGAGTATTTTTCTATTCATGTGGGTTTCTGTTTTCCTCCCAAAGGATCTTGGCTGTCATTTCATTGGATGTTGAGACCGTGGCTACTTC

Coding sequence (CDS)

ATGAGCATTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAGGGAGAGGGTTCGGATTCTTTACCGGCGAGCCCTCAAAGAGACTCTCAACTGGGCCGTCCATCGTCATCTCTTTTACCGAGATGCTTCCGATCTTCGGGAGAGATTCGAGGCAAACAAGAACGTGGAAGATCTTGACACAATAGACAAGCTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCTGGGGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCTGGGGTTGAGATAATATATAACTATGGACGGGAAGATCACTGA

Protein sequence

MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVEDLDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH
Homology
[Close]
BLAST of CmaCh02G003610 vs. Swiss-Prot
Match: NDUB9_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-51
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STA Y ARRAAQ+ERVRILYRRALK+TLNWAVHRH+FYRDASDLRE+F  N++VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP G+EI+YNYG ED+
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

[Close]
BLAST of CmaCh02G003610 vs. Swiss-Prot
Match: NDUB9_BOVIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 1 

Query: 1  MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
          M+  S+  YL  +    ++V  LY+RAL+   +W +HR  +   A  LR RF+ +KN +D
Sbjct: 1  MAFLSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

[Close]
BLAST of CmaCh02G003610 vs. Swiss-Prot
Match: NDUB9_MOUSE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 17 RERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVEDLDTIDKLIADGEASYN 76
          +++V  LY+RAL+   +W +HR  +   A  +R RFE +KN +D+    +L+ + E  + 
Sbjct: 13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72

Query: 77 KWRHPDPYIVPWAPGGSKFTR 98
          + +HP PYI P +PGG+ F R
Sbjct: 73 QNQHPQPYIFPDSPGGTSFER 93

[Close]
BLAST of CmaCh02G003610 vs. Swiss-Prot
Match: NDUB9_PONAB (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 

Query: 1  MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
          M+  ++  YL  R    ++V  LY+RAL+   +W V R  +   A  +R RFE +KN +D
Sbjct: 1  MAFLASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]
BLAST of CmaCh02G003610 vs. Swiss-Prot
Match: NDUB9_GORGO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 12 RRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVEDLDTIDKLIADG 71
          R    +++V  LY+RAL+   +W V R  +   A  +R RFE +KN +D+    +L+ + 
Sbjct: 8  RYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEA 67

Query: 72 EASYNKWRHPDPYIVPWAPGGSKFTR 98
          E  +   +HP PYI P +PGG+ + R
Sbjct: 68 EEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]
BLAST of CmaCh02G003610 vs. TrEMBL
Match: A0A0A0LLB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-53
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STAGYLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFY+DASDLRERFEA+++VED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+EIIY+YGREDH
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]
BLAST of CmaCh02G003610 vs. TrEMBL
Match: A0A061E0K2_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.1e-53
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS ++TA YLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFYRDASDLRE+FEANK+VED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+EI Y+YGRED+
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDN 116

[Close]
BLAST of CmaCh02G003610 vs. TrEMBL
Match: A0A151TD23_CAJCA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=KK1_019550 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.3e-52
Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS++STA YLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFY DAS+LRERFE N++VED
Sbjct: 1   MSMASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
            DTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP G+EI+YNYGRE++
Sbjct: 61  PDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREEN 116

[Close]
BLAST of CmaCh02G003610 vs. TrEMBL
Match: W9R9D4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004478 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.6e-52
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STAGYLARRAAQ+ERVRILYRRALK TLNWAVHRHLFY DASDLRERFEANK+VED
Sbjct: 1   MSAVSTAGYLARRAAQKERVRILYRRALKNTLNWAVHRHLFYSDASDLRERFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTID+LIAD E SYN WRHPDPYIVPWAPGGSKF RNPTPP G+EI+Y+YG+ED+
Sbjct: 61  LDTIDRLIADAEESYNMWRHPDPYIVPWAPGGSKFHRNPTPPSGIEIVYDYGKEDN 116

[Close]
BLAST of CmaCh02G003610 vs. TrEMBL
Match: G7J7T5_MEDTR (NADH ubiquinone oxidoreductase B22-like subunit OS=Medicago truncatula GN=MTR_3g117550 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.6e-52
Identity = 97/116 (83.62%), Postives = 109/116 (93.97%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS++ST  Y+ARRAAQRE+VRILYRRALK+TLNWAVHRHLFY DAS+LR+RFE NK+VED
Sbjct: 1   MSLTSTVAYVARRAAQREKVRILYRRALKDTLNWAVHRHLFYDDASNLRDRFEQNKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNP PP G+EIIY+YGRED+
Sbjct: 61  LDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPAPPQGIEIIYDYGREDN 116

[Close]
BLAST of CmaCh02G003610 vs. TAIR10
Match: AT4G34700.1 (AT4G34700.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 203.4 bits (516), Expect = 7.7e-53
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STA Y ARRAAQ+ERVRILYRRALK+TLNWAVHRH+FYRDASDLRE+F  N++VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP G+EI+YNYG ED+
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

[Close]
BLAST of CmaCh02G003610 vs. NCBI nr
Match: gi|659122203|ref|XP_008461019.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 221.5 bits (563), Expect = 7.8e-55
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS SSTAGYLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFY+DASDLRERFEAN++VED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEANRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTIDKLI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+EIIY+YGREDH
Sbjct: 61  LDTIDKLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]
BLAST of CmaCh02G003610 vs. NCBI nr
Match: gi|702404893|ref|XP_010066221.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 218.0 bits (554), Expect = 8.6e-54
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 2   SISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVEDL 61
           S  +TAGYLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFY+DASDLRERFEANK VEDL
Sbjct: 5   SAVTTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLRERFEANKRVEDL 64

Query: 62  DTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           DTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP G+EIIY+YGRED+
Sbjct: 65  DTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGIEIIYDYGREDN 119

[Close]
BLAST of CmaCh02G003610 vs. NCBI nr
Match: gi|449464842|ref|XP_004150138.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 216.1 bits (549), Expect = 3.3e-53
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS  STAGYLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFY+DASDLRERFEA+++VED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+EIIY+YGREDH
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]
BLAST of CmaCh02G003610 vs. NCBI nr
Match: gi|590685156|ref|XP_007042025.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 214.9 bits (546), Expect = 7.3e-53
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MSISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVED 60
           MS ++TA YLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFYRDASDLRE+FEANK+VED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+EI Y+YGRED+
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDN 116

[Close]
BLAST of CmaCh02G003610 vs. NCBI nr
Match: gi|225427774|ref|XP_002268405.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-52
Identity = 97/114 (85.09%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 3   ISSTAGYLARRAAQRERVRILYRRALKETLNWAVHRHLFYRDASDLRERFEANKNVEDLD 62
           +S+TA YLARRAAQ+ERVRILYRRALK+TLNWAVHRHLFY+DASDLRE+F+ANK+VEDLD
Sbjct: 1   MSATASYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLREKFDANKHVEDLD 60

Query: 63  TIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGVEIIYNYGREDH 117
           TID++IADGEA Y+KWRHPDPYIVPWAPGGSKFTRNPTPP G+EIIY+YGRED+
Sbjct: 61  TIDRMIADGEARYDKWRHPDPYIVPWAPGGSKFTRNPTPPAGIEIIYDYGREDN 114

The following BLAST results are available for this feature:
BLAST of CmaCh02G003610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUB9_ARATH1.4e-5181.03NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thali... [more]
NDUB9_BOVIN1.3e-0934.02NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDU... [more]
NDUB9_MOUSE1.7e-0937.04NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=N... [more]
NDUB9_PONAB1.1e-0834.02NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=N... [more]
NDUB9_GORGO3.2e-0834.88NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla g... [more]
BLAST of CmaCh02G003610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLB9_CUCSA2.3e-5386.21Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1[more]
A0A061E0K2_THECC5.1e-5385.34LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 P... [more]
A0A151TD23_CAJCA3.3e-5284.48NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=... [more]
W9R9D4_9ROSA5.6e-5285.34Uncharacterized protein OS=Morus notabilis GN=L484_004478 PE=3 SV=1[more]
G7J7T5_MEDTR9.6e-5283.62NADH ubiquinone oxidoreductase B22-like subunit OS=Medicago truncatula GN=MTR_3g... [more]
BLAST of CmaCh02G003610 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34700.17.7e-5381.03 LYR family of Fe/S cluster biogenesis protein[more]
BLAST of CmaCh02G003610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122203|ref|XP_008461019.1|7.8e-5588.79PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|702404893|ref|XP_010066221.1|8.6e-5488.70PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|449464842|ref|XP_004150138.1|3.3e-5386.21PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|590685156|ref|XP_007042025.1|7.3e-5385.34LYR family of Fe/S cluster biogenesis protein [Theobroma cacao][more]
gi|225427774|ref|XP_002268405.1|2.8e-5285.09PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0015992 proton transport
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0045271 respiratory chain complex I
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003610.1CmaCh02G003610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 19..72
score: 5.
NoneNo IPR availablePANTHERPTHR12868NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNITcoord: 5..115
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G003610Cucsa.109110Cucumber (Gy14) v1cgycmaB0254
CmaCh02G003610Cla016610Watermelon (97103) v1cmawmB610
CmaCh02G003610Csa2G252030Cucumber (Chinese Long) v2cmacuB588
CmaCh02G003610MELO3C023357Melon (DHL92) v3.5.1cmameB549
CmaCh02G003610ClCG11G003860Watermelon (Charleston Gray)cmawcgB517
CmaCh02G003610CSPI02G12740Wild cucumber (PI 183967)cmacpiB593
CmaCh02G003610CmoCh02G003640Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G003610CmoCh20G008140Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G003610Lsi10G004210Bottle gourd (USVL1VR-Ls)cmalsiB548
CmaCh02G003610Cp4.1LG16g02720Cucurbita pepo (Zucchini)cmacpeB626
CmaCh02G003610Cp4.1LG05g12860Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G003610MELO3C023357.2Melon (DHL92) v3.6.1cmamedB628
CmaCh02G003610CsaV3_2G015290Cucumber (Chinese Long) v3cmacucB0701
CmaCh02G003610Cla97C11G210610Watermelon (97103) v2cmawmbB613
CmaCh02G003610Bhi10G001547Wax gourdcmawgoB0745
CmaCh02G003610CsGy2G012820Cucumber (Gy14) v2cgybcmaB229
CmaCh02G003610Carg27199Silver-seed gourdcarcmaB1145
CmaCh02G003610Carg25955Silver-seed gourdcarcmaB0600
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh02G003610CmaCh20G008060Cucurbita maxima (Rimu)cmacmaB469
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G003610Watermelon (97103) v2cmawmbB608
CmaCh02G003610Watermelon (97103) v2cmawmbB619
CmaCh02G003610Wax gourdcmawgoB0734
CmaCh02G003610Wax gourdcmawgoB0767
CmaCh02G003610Cucurbita maxima (Rimu)cmacmaB060
CmaCh02G003610Cucurbita maxima (Rimu)cmacmaB160
CmaCh02G003610Cucurbita maxima (Rimu)cmacmaB452
CmaCh02G003610Cucumber (Gy14) v1cgycmaB1040
CmaCh02G003610Cucurbita moschata (Rifu)cmacmoB599
CmaCh02G003610Wild cucumber (PI 183967)cmacpiB651
CmaCh02G003610Cucumber (Chinese Long) v2cmacuB644
CmaCh02G003610Melon (DHL92) v3.5.1cmameB563
CmaCh02G003610Watermelon (Charleston Gray)cmawcgB531
CmaCh02G003610Watermelon (97103) v1cmawmB586
CmaCh02G003610Cucurbita pepo (Zucchini)cmacpeB616
CmaCh02G003610Bottle gourd (USVL1VR-Ls)cmalsiB562
CmaCh02G003610Bottle gourd (USVL1VR-Ls)cmalsiB565
CmaCh02G003610Bottle gourd (USVL1VR-Ls)cmalsiB577
CmaCh02G003610Cucumber (Gy14) v2cgybcmaB961
CmaCh02G003610Melon (DHL92) v3.6.1cmamedB643
CmaCh02G003610Melon (DHL92) v3.6.1cmamedB670
CmaCh02G003610Silver-seed gourdcarcmaB0442
CmaCh02G003610Cucumber (Chinese Long) v3cmacucB0724
CmaCh02G003610Cucumber (Chinese Long) v3cmacucB0769