CmoCh20G008140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G008140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9) (1.6.5.3)
LocationCmo_Chr20 : 4024363 .. 4028206 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTACAAAGCCATCTACAGAGGGAGAAAGAGGAAGAAGAGAGAAATGAGCTTTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCCCTCAAAGACACTCTCAATTGGGCTGTCCATCGCCATCTCTTTTATCGAGATGTATACGGTTTTGTCCATTTCCATTTCTCTGTTCTGACATTTCTTCGATCCTAAACTGATTCGGTCTTTTTTGTTCTTCTAATCGTCCATCGTTTCAGGCGTCGGACCTCCGGGAGAGATTCGATGCAAACAAGCACGTGGTTCGTTCTATGTCTGTTCCTTTAATTTTGTTTTGATCGTTTTTTTTTTTTTTTGTTCTTTTGTGTTTTTTCGTTGATTTGAAATTTTCTGTATAACGACCTCTTATGAGTTAATTGACCTAGGGATGTGGATATAAACCGATGAAATAATTTTTTGTGCGGCTAGATTGATGTTTGAGTAGACTCTACCCTTAATGCGTGGATTTTTCTTACAACCATTTTTCGTTCAAATTGTCGTGCGTTACTTGATGAAACATTGAAATGTGGTTTGTAATGAATGCTTATGGTTCTTCGGTCCTTTTAGTCTCTCTGGGATTATTGATTGATCCTTCAATTTCGTCTGCTTACTACATCTGGAAAAGCGTGGATTTCACAAAGAAATGTTATGATATCTGGGAATCAAATATCACCATTTTCCTCATTCAAATTATTCTATGTTATTGATCAATTGCTTATGGATCCTTTTTTGGGTGGATTTGCAGGAAGATCTTGACAGAATAGATAGGATGATAGCTGATGGAGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGGTAAGTACACTCATGAATGAACTGATCATGTGGCAGTTCATAAAAGTAAGGATGCAAAATCAAATGCTGTTACTACGTAACATGTTAATGACAAAATCGTCCTCTTAAGTTCTTGGTCTTCTACTTTAATCTGACCTGTAGATAACAGGCATGCTTTCTGTTGATTTGAAATGCCACTAAAGTGTTGAGTTTCCTTCCTCCTTTTTGAATAATAAAAATTGTATTGCAGAAACAATATGAACAAAATATTGTGAGTTTAATTAAAAAAAACCTATGGTATTTATCCATTTTAAGAGTCAGTTTAGTAGGTTGGAATTGTAGTAACTAGCCACAAAATTTGGATTTTCCTTCAGGGATGTTTCTTGAGTATCCAAGAATATAAGATACCTGCACAAAATCTTAGATATTATTACTTATTTATTTATTTTTAAATAAGAGACGAGGGATGTATTATAAACACAAAATGGAGAACACCCGTAGGATGGGATGGGGTAGAGATCCACGCCTAGAAAGAAGCAAACTACAATATCAAAGCCTTCCAATCATTTGTAATCATGAGTAGGCTATAATTACAAAAGAGTTTCTTCTGGTTTGAACACCACCAAGTAGTATGCTACTATGCTGTACATTTCTCCAAAAAGAATCCACCAAAGATGGCCAATTTTCAAAGGTTCCCTGAATTCTCTCTCTCCACATCGTCCACAAAATAGCCCTCACCGCACAATTCCATAAAATTTTTGCCTTCCTTTGACAGGACTTCCCTCCTAGGCTCTCCATCAGCCACCCATCAATCTTCTAAGGGAGACATTCAGCCAACTTAAAAACCTGAAAGAAGGAAAATCGTGTTGAACGGGAAAATGGGCAGTAGGGCAGAATGTGATCCAAAGACACTCCCTCCTTCAAGCACAAACAGCAAATAGATGGAGACTCCCTCTGCAGCTTATCCGAAGAGTTAAGGCTTCTATGCATGACCAACCAAATAAAGACATGAACTTTTTGCGCCCTTTTTTTTTCTTTCCAGTTGTAGTCCACCATGGGAGTTCTAAGTTTAACATTCAACTTAATCAGGATAGTTGGTAATGAAATAGGGAGTGTGATGATCTTCTATTAGTTTGGAACAAGAAATTCTTAATACTTCGGATAAGCTGCAGAGTGTGATGGTCTTCGTTAAGCTGCAGGCATGCTTATGTCAAAACAATCTTCCCCCAGTTCCCAGATGGTTGCCAGCTCCCACCTAAAACTTTAAAGTATCATTCATTGTTTGTTATTTCAATTCTGCTTAGATCAAGGCTATGCATGCCGTTATTAATCCTAATTTTTTATTTTTCTTTTACTCTGTAGTTCCTTGGGCTCCGGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCGGGGGTAAGTTTTCTTTAGAAGATTGTTCTCATATATTTTTTTTTCATAAGAATTTCATTCCTTCTCTTTACATTTTTTTTAGACATTATTATTATTTTTTTTAATTCTTGCATATATCTTTTTTTTTTTATTGCATTATCTGTTCTATAGGTTGTACAATTGTGTCCCTAAGAACGGTATAGCATTAACCACCTCATTCTCAGTGCTTTTTAATAGAGGTCATGATATGCAGAGTACACAATAATTATAATGATTTGTGATTGGCTTATTGGTCAAATGAAACGTCTACTAAAACCACAGTTTTGAAATATGTTTGCTTTAACATGGCATTTTTTTCCCCTAAAGATGAGCACTAGTGTAAGCGAAGGTTCCTTTCCCCTATTCCTGGAGGGAGCACGTAAAAATGGAAAAGTGGAAATTCTTTTCCCAGCAATTAGAGCATAGGACGCAGCTCCGTACTCTTTACCTTTTTTCTTCTTTGGCTGTTCTAATCTTATCATGTGCTTCGGGCTTGAGTTCTCTACTCTTTGCCCCTTCGATAATTTTTTATTGCAATTTTTAGAGTGTAATCTAGATGACACTAACATTTATGAAATTATGCAGATCGAGATCATATATAACTATGGGCGGGAAGATCACTGAAATCTTCGTTATCATGGTAATAAATAAAGGTAAGCTTACATGTGGCTGCTTATAAATGCCTGTTTTCCTCGATCTGGATGAAACTCAAATTGGCTTGAAACTGGCTATTATGCTATTCTTGTATTTTTATTTTATTTCTTGCTTATTCACTCCCATGAAGAGTTTGTATCTTTTGAGCCTTAGTCCTTTCACATTTATTCAATGAAAAGTTTTGTTTCTTGTTCAAAAAGGGAGAAAAAGTGTGTTTTGTATGTGATGCCGGCCAGATAGTATTATATTATGGTAAAGCGGAGTGAATGTTGAGAAGCGAAAGAAGTTTGTATACTCTGAAAAAGTTAGTTTGTTGTGTGTTGAAGTTTCTAAAGCAGACCATCTACGCAATATTACAGTCGACAATAGTTTTCAACATACAATGACTCTAGTTTTGGACATACTTTTTCCTTGTAGCTCTAATGTGAAAAGCAACGTCCTTGTAGCTCTAATGTGGAAAGCAACGTTTTGAGTATTGCAGGTTGAAAAAGCAACGTTTTGAGTATTGCAGGTTGAAATTGTTCGTGGGCTCGTCAGAGTCGATGATGATAAAGCGCGAGCTCTTTGACGTGTAAACTCGAATGAACACAAATTATAGTCATTCCTAGTTGATTTGGTTTCTTCTTATTGCTCAGATATGCAAATTTGACATAGAAAAATCACCATTGGAACGATGTGTGATGCTGCAACTTTTGGTTAATTATCCATCCTTTGCAGGATGAGCGGTTTGCCCGATTGCTTGTCATTGCATCAGATGTTTAAATAAATAGGAAATGTTTTTAGCAATTGAGAAGCTAATTTCATTTTTATTGGGCATCGGTGCTCTTATGACGATTTTTTATTGGAAAGGTTGAACAGGATACTTTCTAGCACGATCTAAAAAAGGTACTTTTCGG

mRNA sequence

CATTTACAAAGCCATCTACAGAGGGAGAAAGAGGAAGAAGAGAGAAATGAGCTTTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCCCTCAAAGACACTCTCAATTGGGCTGTCCATCGCCATCTCTTTTATCGAGATGCGTCGGACCTCCGGGAGAGATTCGATGCAAACAAGCACGTGGAAGATCTTGACAGAATAGATAGGATGATAGCTGATGGAGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCGGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCGGGGATCGAGATCATATATAACTATGGGCGGGAAGATCACTGAAATCTTCGTTATCATGGTAATAAATAAAGGTAAGCTTACATGTGGCTGCTTATAAATGCCTGTTTTCCTCGATCTGGATGAAACTCAAATTGGCTTGAAACTGGCTATTATGCTATTCTTGTATTTTTATTTTATTTCTTGCTTATTCACTCCCATGAAGAGTTTGTATCTTTTGAGCCTTAGTCCTTTCACATTTATTCAATGAAAAGTTTTGTTTCTTGTTCAAAAAGGGAGAAAAAGTGTGTTTTGTATGTGATGCCGGCCAGATAGTATTATATTATGGTAAAGCGGAGTGAATGTTGAGAAGCGAAAGAAGTTTGTATACTCTGAAAAAGTTAGTTTGTTGTGTGTTGAAGTTTCTAAAGCAGACCATCTACGCAATATTACAGTCGACAATAGTTTTCAACATACAATGACTCTAGTTTTGGACATACTTTTTCCTTGTAGCTCTAATGTGAAAAGCAACGTCCTTGTAGCTCTAATGTGGAAAGCAACGTTTTGAGTATTGCAGGTTGAAATTGTTCGTGGGCTCGTCAGAGTCGATGATGATAAAGCGCGAGCTCTTTGACGTGTAAACTCGAATGAACACAAATTATAGTCATTCCTAGTTGATTTGGTTTCTTCTTATTGCTCAGATATGCAAATTTGACATAGAAAAATCACCATTGGAACGATGTGTGATGCTGCAACTTTTGGTTAATTATCCATCCTTTGCAGGATGAGCGGTTTGCCCGATTGCTTGTCATTGCATCAGATGTTTAAATAAATAGGAAATGTTTTTAGCAATTGAGAAGCTAATTTCATTTTTATTGGGCATCGGTGCTCTTATGACGATTTTTTATTGGAAAGGTTGAACAGGATACTTTCTAGCACGATCTAAAAAAGGTACTTTTCGG

Coding sequence (CDS)

ATGAGCTTTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCCCTCAAAGACACTCTCAATTGGGCTGTCCATCGCCATCTCTTTTATCGAGATGCGTCGGACCTCCGGGAGAGATTCGATGCAAACAAGCACGTGGAAGATCTTGACAGAATAGATAGGATGATAGCTGATGGAGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCGGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCGGGGATCGAGATCATATATAACTATGGGCGGGAAGATCACTGA
Homology
[Close]
BLAST of CmoCh20G008140 vs. Swiss-Prot
Match: NDUB9_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-53
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MS  STA Y ARRAAQKERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F+ N+ VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           +DRID++IA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP GIEI+YNYG ED+
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

[Close]
BLAST of CmoCh20G008140 vs. Swiss-Prot
Match: NDUB9_BOVIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-10
Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
          M+F S+  YL  +    ++V  LY+RAL+   +W +HR  +   A  LR RFD +K+ +D
Sbjct: 1  MAFLSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKD 60

Query: 61 LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          + +  +++ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

[Close]
BLAST of CmoCh20G008140 vs. Swiss-Prot
Match: NDUB9_MOUSE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 32/97 (32.99%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
          M+F +   YL  +    ++V  LY+RAL+   +W +HR  +   A  +R RF+ +K+ +D
Sbjct: 1  MAFCAPPAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          + R  +++ + E  + + +HP PYI P +PGG+ F R
Sbjct: 61 MMRATQLLREAEEEFWQNQHPQPYIFPDSPGGTSFER 93

[Close]
BLAST of CmoCh20G008140 vs. Swiss-Prot
Match: NDUB9_PONAB (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-09
Identity = 32/97 (32.99%), Postives = 56/97 (57.73%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
          M+F ++  YL  R    ++V  LY+RAL+   +W V R  +   A  +R RF+ +K+ +D
Sbjct: 1  MAFLASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          + R  +++ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]
BLAST of CmoCh20G008140 vs. Swiss-Prot
Match: NDUB9_GORGO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-08
Identity = 30/97 (30.93%), Postives = 56/97 (57.73%), Query Frame = 1 

Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
          M+F ++  YL  +    ++V  LY+RAL+   +W V R  +   A  +R RF+ +K+ +D
Sbjct: 1  MAFLASGRYLTHQ----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          + +  +++ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]
BLAST of CmoCh20G008140 vs. TrEMBL
Match: A0A0A0LLB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.2e-55
Identity = 103/116 (88.79%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MSF STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERF+A++HVED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           LD IDR+I +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP GIEIIY+YGREDH
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]
BLAST of CmoCh20G008140 vs. TrEMBL
Match: A0A061E0K2_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.3e-55
Identity = 103/116 (88.79%), Postives = 110/116 (94.83%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MS ++TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+F+ANKHVED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           LD IDRMIADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP GIEI Y+YGRED+
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDN 116

[Close]
BLAST of CmoCh20G008140 vs. TrEMBL
Match: A0A151TD23_CAJCA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=KK1_019550 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.9e-53
Identity = 100/116 (86.21%), Postives = 108/116 (93.10%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY DAS+LRERF+ N+HVED
Sbjct: 1   MSMASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
            D IDR+IAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP GIEI+YNYGRE++
Sbjct: 61  PDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREEN 116

[Close]
BLAST of CmoCh20G008140 vs. TrEMBL
Match: A0A0D2RT13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-52
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRE+F+ANKHVED
Sbjct: 1   MSGASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLREKFEANKHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           LD ID+MI  GEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP GIEI+Y+YGRE++
Sbjct: 61  LDTIDKMIDAGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEILYDYGREEN 116

[Close]
BLAST of CmoCh20G008140 vs. TrEMBL
Match: C6SWD4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G008100 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-52
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 4   SSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVEDLDR 63
           +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY DAS+LRERF+ N+HVED D 
Sbjct: 2   ASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVEDPDT 61

Query: 64  IDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           IDR+IAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP GIEI+YNYGRED+
Sbjct: 62  IDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREDN 114

[Close]
BLAST of CmoCh20G008140 vs. TAIR10
Match: AT4G34700.1 (AT4G34700.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 207.6 bits (527), Expect = 4.1e-54
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MS  STA Y ARRAAQKERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F+ N+ VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           +DRID++IA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP GIEI+YNYG ED+
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLEDN 116

[Close]
BLAST of CmoCh20G008140 vs. NCBI nr
Match: gi|659122203|ref|XP_008461019.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 224.9 bits (572), Expect = 7.1e-56
Identity = 104/116 (89.66%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERF+AN+HVED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEANRHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           LD ID++I +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP GIEIIY+YGREDH
Sbjct: 61  LDTIDKLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]
BLAST of CmoCh20G008140 vs. NCBI nr
Match: gi|449464842|ref|XP_004150138.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 221.9 bits (564), Expect = 6.0e-55
Identity = 103/116 (88.79%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MSF STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERF+A++HVED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           LD IDR+I +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP GIEIIY+YGREDH
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGREDH 116

[Close]
BLAST of CmoCh20G008140 vs. NCBI nr
Match: gi|225427774|ref|XP_002268405.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 103/113 (91.15%), Postives = 109/113 (96.46%), Query Frame = 1 

Query: 4   SSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVEDLDR 63
           S+TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRE+FDANKHVEDLD 
Sbjct: 2   SATASYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLREKFDANKHVEDLDT 61

Query: 64  IDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           IDRMIADGEA Y+KWRHPDPYIVPWAPGGSKFTRNPTPP GIEIIY+YGRED+
Sbjct: 62  IDRMIADGEARYDKWRHPDPYIVPWAPGGSKFTRNPTPPAGIEIIYDYGREDN 114

[Close]
BLAST of CmoCh20G008140 vs. NCBI nr
Match: gi|590685156|ref|XP_007042025.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 103/116 (88.79%), Postives = 110/116 (94.83%), Query Frame = 1 

Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVED 60
           MS ++TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+F+ANKHVED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           LD IDRMIADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP GIEI Y+YGRED+
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDN 116

[Close]
BLAST of CmoCh20G008140 vs. NCBI nr
Match: gi|702404893|ref|XP_010066221.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 218.4 bits (555), Expect = 6.6e-54
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 1 

Query: 5   STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVEDLDRI 64
           +TAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERF+ANK VEDLD I
Sbjct: 8   TTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLRERFEANKRVEDLDTI 67

Query: 65  DRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 117
           DR+IAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP GIEIIY+YGRED+
Sbjct: 68  DRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGIEIIYDYGREDN 119

The following BLAST results are available for this feature:
BLAST of CmoCh20G008140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUB9_ARATH7.3e-5382.76NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thali... [more]
NDUB9_BOVIN3.4e-1034.02NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDU... [more]
NDUB9_MOUSE1.7e-0932.99NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=N... [more]
NDUB9_PONAB8.4e-0932.99NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=N... [more]
NDUB9_GORGO7.1e-0830.93NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla g... [more]
BLAST of CmoCh20G008140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLB9_CUCSA4.2e-5588.79Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1[more]
A0A061E0K2_THECC9.3e-5588.79LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 P... [more]
A0A151TD23_CAJCA3.9e-5386.21NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=... [more]
A0A0D2RT13_GOSRA1.5e-5285.34Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1[more]
C6SWD4_SOYBN1.5e-5287.61Uncharacterized protein OS=Glycine max GN=GLYMA_04G008100 PE=2 SV=1[more]
BLAST of CmoCh20G008140 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34700.14.1e-5482.76 LYR family of Fe/S cluster biogenesis protein[more]
BLAST of CmoCh20G008140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122203|ref|XP_008461019.1|7.1e-5689.66PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|449464842|ref|XP_004150138.1|6.0e-5588.79PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|225427774|ref|XP_002268405.1|1.3e-5491.15PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|590685156|ref|XP_007042025.1|1.3e-5488.79LYR family of Fe/S cluster biogenesis protein [Theobroma cacao][more]
gi|702404893|ref|XP_010066221.1|6.6e-5491.07PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Vocabulary: Cellular Component
TermDefinition
GO:0005747mitochondrial respiratory chain complex I
Vocabulary: Biological Process
TermDefinition
GO:0006120mitochondrial electron transport, NADH to ubiquinone
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0015992 proton transport
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0045271 respiratory chain complex I
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008140.1CmoCh20G008140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 19..72
score: 1.
NoneNo IPR availablePANTHERPTHR12868NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNITcoord: 5..115
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G008140Cucsa.109110Cucumber (Gy14) v1cgycmoB0252
CmoCh20G008140CmaCh20G008060Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G008140CmaCh02G003610Cucurbita maxima (Rimu)cmacmoB606
CmoCh20G008140Cla016610Watermelon (97103) v1cmowmB534
CmoCh20G008140Csa2G252030Cucumber (Chinese Long) v2cmocuB531
CmoCh20G008140MELO3C023357Melon (DHL92) v3.5.1cmomeB495
CmoCh20G008140ClCG11G003860Watermelon (Charleston Gray)cmowcgB476
CmoCh20G008140CSPI02G12740Wild cucumber (PI 183967)cmocpiB536
CmoCh20G008140Lsi10G004210Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G008140Cp4.1LG16g02720Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G008140Cp4.1LG05g12860Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G008140MELO3C023357.2Melon (DHL92) v3.6.1cmomedB568
CmoCh20G008140CsaV3_2G015290Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G008140Cla97C11G210610Watermelon (97103) v2cmowmbB544
CmoCh20G008140Bhi10G001547Wax gourdcmowgoB0679
CmoCh20G008140CsGy2G012820Cucumber (Gy14) v2cgybcmoB209
CmoCh20G008140Carg27199Silver-seed gourdcarcmoB1114
CmoCh20G008140Carg25955Silver-seed gourdcarcmoB0584
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G008140CmoCh02G003640Cucurbita moschata (Rifu)cmocmoB404
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G008140Watermelon (97103) v2cmowmbB550
CmoCh20G008140Wax gourdcmowgoB0673
CmoCh20G008140Cucurbita moschata (Rifu)cmocmoB382
CmoCh20G008140Cucurbita maxima (Rimu)cmacmoB519
CmoCh20G008140Wild cucumber (PI 183967)cmocpiB567
CmoCh20G008140Cucumber (Chinese Long) v2cmocuB561
CmoCh20G008140Melon (DHL92) v3.5.1cmomeB503
CmoCh20G008140Watermelon (Charleston Gray)cmowcgB485
CmoCh20G008140Watermelon (97103) v1cmowmB516
CmoCh20G008140Cucurbita pepo (Zucchini)cmocpeB521
CmoCh20G008140Bottle gourd (USVL1VR-Ls)cmolsiB500
CmoCh20G008140Cucumber (Gy14) v2cgybcmoB940
CmoCh20G008140Silver-seed gourdcarcmoB0434