ClCG11G003860.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G003860.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	NADH dehydrogenase 1 beta subcomplex subunit 9
Location	CG_Chr11 : 4090241 .. 4095188 (-)
Sequence length	727

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTGGTCCAAATCGAAACCACAAACAACACAGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGTATTCGTTTCTTTTTTCCCCCATTTCCACTTCTCTGTTTTGACATTTCTTCGATCCTAAACTGATTTCGTGATTCTCCCTTCTAATATTCTTTTGATTCAGGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGTTCGTTCTCTGTCTGTTCCTTTAATTTTGCTTTGATCGGTTTTTTGTTATTTTCTATGTTTTCGTTGATATGAAATTTTCGGCATTGCGACCTCTTGTGAGTTAACTGGCATAGGGATATGAAAGTTTTTTTTTTTTTTTTTTGTGCGGCGGGATTGATATTTGCGGGGACTTTTCTTACTTGCTTTTTTCGTGTAAACTGTCTTGCGTTACTTGAGGAAACATTAAAATGTGGTTTGTATTTGATAGTAGTAATTTTGAAATGGTTAAAACCACTTTTTGTTGTGTTTAAAATCGCTGCAAAACACATCTTTAATCACTCAAAATAGATTCAATGTTCAAATTGATTTTAAATGATCAAAAGCATTTTCTGAGTGACTTGAAAAAGAGAAAAGTGATTTTAACCATTTTCTCTGGGATGAACATTGTTGATTGATCATTGAATATCGTCTGCTTACTGCATCTGGAAATGCGTGGATTTCACTAATAATTGTTATGATATCCTAGGAATCAAATATGATCATTTCCCAGATTCAAATCGTGTTAACTTGGAAGTCATGTAGGATATCCCATATTTAAGGATTATGTTGCCCCCAATTTGAGTTTCAAATAAGTAAGCATTCTCTTATAGAAATCATTTTCCTATACAATTTAACCATTGAGTTGCTTGTCTTATATATGTGCATAGCTCTCTCCTGATCCATGGAGTTCATTAAAAAAAAACTCAAGTTTGAAGACTGACGTTAGACGGTGGTGAGAAACTTATGAGAATTAACTTATTAAACTCAGATTAGGACTTAAAGATCCAAGTATGTTCTAGGAAATTGGGTTAAACTGAAATCTGAGAGCAGAGATTCAAGCTGGGAAAGGTCTACATGTATAGAACGACATGATTTTAGTCGGCAAGCCATGATTCCTATGCTATTGATCTATTGCTTATGGATCCTTTTTTGGGGTGGATTTGCAGGAAGATCTTGACACAATAGACAAACTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGGTAAGCACAACCATGAATGAATTTGATCATGTGGCATGGCAGTTAATTAAAGTAAGGTTGCAAAATTGAATGCTGTTACTGATTATGAAATATGGTAATGGTGAAATTGACTTCTCTTATGTTCTTGGTCTTCTGCTTTAATCTGCCTGTAGATATCAGGCATGCTTTCTGTTTATTTGAAATGTCACTATAGCGTTGATTTTGTCTTCCTCCCTTTTGAATTACAGAAATTGTATTGCAGAAACAATATGAACAAGATATTACGAGTTTAATTAAAAAAACAAAAAACAATAGCCTAGGGGTTTTTCTCCATTTTTAGAATCAGTTTAGTAAGTTGGAATTATAGCAACTAGTGACAAATTATAGATTTTCCTTCAGAGGTTGGTTCTTGACTATCTAAGACTTTAAGATGCCTACACGAAATTTTAGATATTATTTATTTTTGTTGGAAGGAGTTTCGCCCTACCCCTGGCCCATAGATTGTTCCTTCTTTTGTTTTAGTTCAATATCGTTTCTTATCCCAAAAAAAATTATTTATTTATTTTTAAATGAGAAACAAAGGATGTATTATAAACACAAAATGGAGAACAACTGTAGGATGGGGGGAAGGAGAGATCCACGCCTGAAAAGAAGCAACGATATTGTTACAAAAGTTCATATGGTTTGAACACCACCAAGTAGTATGCTACTATGCTGTACATAAAAAGGAATCCACTGAAGAAAACCTATTTTGAAAGATTTTTCCATTTCTCTCCTTCCTTATCATTATTTGATTCATCCACAAAATAGCCCCACCGCACTATTCCATAAAAATTTGGCCTTCCCTTTAAAGGACATTCCTCCTAGGTTCTTCATCAGTCACCTATCAATCTTCTTAGGGAGACATGCAGCCAAATCTAAAACTTGAAAGAGGGAAAACCATGCTGAACAGGAGAACAGGCAGTGGGGAAGCATGCGATCCAAAAGATTCTCCCTCCTTCAAGCACAAATAGCAAATTGATGGAGACTTTCTCTGCAACTTTTCCGAAGTATTAAGGCTTTTATGCATGACCAACCAAATCAAGACCTTAACTTTCTTAGCCAGCCTTCTCTTCCAGTGTAGTCTACCATGGGAGTTTTAATTTTAGCGTTCAACTTAGTCCGGAAAGTTGGTGGTGAAATATTATGGCGTTCTGTCTTTACTAAAAATATGTTGTGTTTATTTTGCAATAACTTCTCCATTAGAATGAAATAAAATTAACACCTGTTCCAGCAATGGCATTGTTATCAGTTTATTGTTGTTTATTTTATTACTTTTATATATCAACAATGTTACTTTGATAATTTTTTTAGATTCCCTTATCATAAATAATATTAATAATTAAGTTTATATACTTATTTAATATGAATATTGCTTAATAAATTGAATATTGTTTTACTAAAATTTTATATTGTTTTTTTAAGAAGAAACAACTTCGATTTCCCAGAATTAGTTGTTAAATTGTTTGTTTTTTCTATTTAGTGGGACCTTTAGATTAGAAGGAGTGAAGATTGCTGTGCTTATTGCCAAACAAGACAACTTGGTGAGAGAGATTAATAGGATTGTGATCTCAAAAGTCTAAGGAAGGGAGAAATAATGAAATGGACTATAGATGCCTTGCAATCATGGAAACCTTGGTGTCCTAGATGCTTAGTGTCCTTAATTTCTATAAATTAGACCCAGGCATATGGATACCTATCCCCTTAACGTTCATGATTACATCAAAGGAACTAGCACCGTATAGGGTTATGAGGATGTCTGCATCACAAGATCTTCAGTCCAACATGTGTGTCACCCTTTGCAAAAAGTTTTTGTGAAATATATTTTTCCTTTTTATGAAGTATGATGGTCTTCGATGAGTTTGGAACAAGAAATCCTCATTTGTAGTTGTCTGTTAGTTAAGTTGTAGGCATGCGTATGTAAAAACAATCTTCCCCCCACTCCCCAGATGGTTGCCAGCTCCTACCTAAAACTTTGAAGTATCATTTCATTGTTTGTTTTTTCTGTTCTGCTCAGAACAAGGCTATATATGCAGTTATGAATCCTAATTTTTATTTTTCCTTTACTCTGTAGTTCCTTGGGCTCCCGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTGAAGGGGTAAGTTTCCTTTAGAAGATTGTTCACATTTTATTTTTTTTTTCTCATAAAAATTTTAAAATCTTCATTCCTTCTCTTCTCTTCACTCAACTTTTTTTCTTTTTTCTTTTCTTATATTTATTATTATTATTATTATTATTATTATTATTATTTTATTTGCATATATCTTTCATCATCAACACCCTTACTTAAACAAGATCTGTTCTATAGATTGTACAATTGTGTTTATAAGTAGAACTATATAGCATCATCTTTAACCACCTCATCCTCCGTGCTTTATAAGAGAGGTAATGATGTAGAAACTACATAATAGTTATAATGATCTGTGGTTGGTTTATTGCTCAAATGAAATGTCTAATAATCACAGTTATGAAATATGTATATTTGTTTTCACGTGGCCTTTCCCCATTCTTGGAGGGAGCACATTTAAATGGAAAAGTGGAAGTACTTTTCCCAGCGATTAGATCATAGGAACTCAGCTCCATGCTCTTTCCCTTTTTTCTTCTTTCGCTGTTTTAATCCTATCATTTGCTGCGGGCTTGAGTTCTCTACTCTTTGTCCCTTTGATAAATTTGTATGCAATTGTTAGAGTGTAATCTCATCCGTCAATATGGCACCAAAATCTATGTGTTGTGATACAGATTGAGATCATATATGACTACGGGCGGGAAGATCACTGAAATCTTCTATATCATGGTAATAAATAAAGGTAAGCTTACATTTGGCTGCTGATAGTAACGAATCTGAATGCAGCTCAAATTGAACATTAGTCTTTTTTCATTTCTTCAATGAGAAGGTTTTAGAAAAAAGTGTGTTTTGTTGAGAAGACTATGGTTCTTTACCGGGTGAAACATTTCTCTCTCAAAAGAATCCATTTTGTCTGATGTTGAAAACAATCTTCAAAAAGTTACTCTATTGTTGTGAAGTGTTCAAGCTGTTTCCTAAAGCAACCATTTACGTAATATTACAATTAACAATCTTTTTCGATATACAATGACCCAAGTTTTGGATACTTTTTGCTTGAACATCTAATGTGGATCCAATGCTTCGACTATTGCAGGTTGAAATGGTTGGTGGCTTTGTGAGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTGAATGAACACAAATTATAGTGATTCCTTGTTGATTTGCTTTCTACTTTTTGTTCAGATATGCAAATTTGACATAGAAAAAATCACCATTGGAACGGTGTGTGATAGTACAACTTTTGGTTAATTTAAGCGTTCATCCTTCGCATGTACCTATGTTTTTGTGAATGTGGCTAATTTTTCTTTTTCCTTTTGGTGGGGACTTTAGCTATGGAAGTCTTCAGGATGAGCAGTTTGCCTCATTGCTTGTAATTGCAGCAGATGTTGAAATTGTG

mRNA sequence

TTGTTGGTCCAAATCGAAACCACAAACAACACAGTAGATACAAGGCATCTGAAGAAGAAGAAGAGAGAGAAAGTGAGAGATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGACACAATAGACAAACTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCCGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTGAAGGGGTTGAAATGGTTGGTGGCTTTGTGAGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTGAATGAACACAAATTATAGTGATTCCTTGTTGATTTGCTTTCTACTTTTTGTTCAGATATGCAAATTTGACATAGAAAAAATCACCATTGGAACGGTGTGTGATAGTACAACTTTTGGTTAATTTAAGCGTTCATCCTTCGCATGTACCTATGTTTTTGTGAATGTGGCTAATTTTTCTTTTTCCTTTTGGTGGGGACTTTAGCTATGGAAGTCTTCAGGATGAGCAGTTTGCCTCATTGCTTGTAATTGCAGCAGATGTTGAAATTGTG

Coding sequence (CDS)

ATGAGTTTTTCATCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCTCTCAAAGACACTCTCAATTGGGCTGTTCATCGCCATCTCTTTTACCGAGATGCGTCGGACCTCCGGGAGAGATTCGAGGCAAACAAACACGTGGAAGATCTTGACACAATAGACAAACTGATAGCTGATGGGGAAGCTTCCTATAATAAGTGGCGACATCCTGATCCCTATATCGTTCCTTGGGCTCCCGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTGAAGGGGTTGAAATGGTTGGTGGCTTTGTGAGAGTTGATGATGATAAAAGGAGCTCTTTGATGTGTAAACTTGAATGA

Protein sequence

MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVEDLDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDDKRSSLMCKLE

Homology

[Close]

BLAST of ClCG11G003860.1 vs. Swiss-Prot
Match: NDUB9_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 90/108 (83.33%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS  STA Y ARRAAQKERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F  N+ VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMV 109
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP G+E+V
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIV 108

[Close]

BLAST of ClCG11G003860.1 vs. Swiss-Prot
Match: NDUB9_BOVIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-10
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F S+  YL  +    ++V  LY+RAL+   +W +HR  +   A  LR RF+ +K+ +D
Sbjct: 1  MAFLSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

[Close]

BLAST of ClCG11G003860.1 vs. Swiss-Prot
Match: NDUB9_MOUSE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-10
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F +   YL  +    ++V  LY+RAL+   +W +HR  +   A  +R RFE +K+ +D
Sbjct: 1  MAFCAPPAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  + + +HP PYI P +PGG+ F R
Sbjct: 61 MMRATQLLREAEEEFWQNQHPQPYIFPDSPGGTSFER 93

[Close]

BLAST of ClCG11G003860.1 vs. Swiss-Prot
Match: NDUB9_PONAB (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-09
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F ++  YL  R    ++V  LY+RAL+   +W V R  +   A  +R RFE +K+ +D
Sbjct: 1  MAFLASGAYLTHR----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]

BLAST of ClCG11G003860.1 vs. Swiss-Prot
Match: NDUB9_GORGO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 1  MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
          M+F ++  YL  +    ++V  LY+RAL+   +W V R  +   A  +R RFE +K+ +D
Sbjct: 1  MAFLASGRYLTHQ----QKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKD 60

Query: 61 LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTR 98
          +    +L+ + E  +   +HP PYI P +PGG+ + R
Sbjct: 61 MAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]

BLAST of ClCG11G003860.1 vs. TrEMBL
Match: A0A061E0K2_THECC (LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-52
Identity = 98/117 (83.76%), Postives = 108/117 (92.31%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS ++TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+FEANKHVED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+E+   + R D+D
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDND 117

[Close]

BLAST of ClCG11G003860.1 vs. TrEMBL
Match: A0A0A0LLB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-51
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MSF STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEA++HVED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVD 116
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R D
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGRED 115

[Close]

BLAST of ClCG11G003860.1 vs. TrEMBL
Match: A0A151TD23_CAJCA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=KK1_019550 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.0e-51
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY DAS+LRERFE N+HVED
Sbjct: 1   MSMASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
            DTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP+G+E+V  + R ++D
Sbjct: 61  PDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREEND 117

[Close]

BLAST of ClCG11G003860.1 vs. TrEMBL
Match: W9R9D4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004478 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.9e-51
Identity = 98/117 (83.76%), Postives = 105/117 (89.74%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS  STAGYLARRAAQKERVRILYRRALK+TLNWAVHRHLFY DASDLRERFEANKHVED
Sbjct: 1   MSAVSTAGYLARRAAQKERVRILYRRALKNTLNWAVHRHLFYSDASDLRERFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTID+LIAD E SYN WRHPDPYIVPWAPGGSKF RNPTPP G+E+V  + + D+D
Sbjct: 61  LDTIDRLIADAEESYNMWRHPDPYIVPWAPGGSKFHRNPTPPSGIEIVYDYGKEDND 117

[Close]

BLAST of ClCG11G003860.1 vs. TrEMBL
Match: A0A0D2RT13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-50
Identity = 96/117 (82.05%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRE+FEANKHVED
Sbjct: 1   MSGASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTIDK+I  GEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R ++D
Sbjct: 61  LDTIDKMIDAGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEILYDYGREEND 117

[Close]

BLAST of ClCG11G003860.1 vs. TAIR10
Match: AT4G34700.1 (AT4G34700.1 LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 193.7 bits (491), Expect = 6.7e-50
Identity = 90/108 (83.33%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS  STA Y ARRAAQKERVRILYRRALKDTLNWAVHRH+FYRDASDLRE+F  N+ VED
Sbjct: 1   MSGVSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMV 109
           +D IDKLIA GEA YNKWRHPDPYIVPWAPGGSKF RNPTPP G+E+V
Sbjct: 61  VDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIV 108

[Close]

BLAST of ClCG11G003860.1 vs. NCBI nr
Match: gi|659122203|ref|XP_008461019.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 214.9 bits (546), Expect = 8.0e-53
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEAN+HVED
Sbjct: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEANRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVD 116
           LDTIDKLI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R D
Sbjct: 61  LDTIDKLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGRED 115

[Close]

BLAST of ClCG11G003860.1 vs. NCBI nr
Match: gi|590685156|ref|XP_007042025.1| (LYR family of Fe/S cluster biogenesis protein [Theobroma cacao])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-52
Identity = 98/117 (83.76%), Postives = 108/117 (92.31%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS ++TA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRE+FEANKHVED
Sbjct: 1   MSGATTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLREKFEANKHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           LDTID++IADGEA+YNKWRHPDPYIVPWAPGGSKFTRNP PP G+E+   + R D+D
Sbjct: 61  LDTIDRMIADGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEIAYDYGREDND 117

[Close]

BLAST of ClCG11G003860.1 vs. NCBI nr
Match: gi|702404893|ref|XP_010066221.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 211.8 bits (538), Expect = 6.8e-52
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 5   STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVEDLDTI 64
           +TAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEANK VEDLDTI
Sbjct: 8   TTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLRERFEANKRVEDLDTI 67

Query: 65  DKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
           D+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP G+E++  + R D+D
Sbjct: 68  DRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPSGIEIIYDYGREDND 120

[Close]

BLAST of ClCG11G003860.1 vs. NCBI nr
Match: gi|449464842|ref|XP_004150138.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-51
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MSF STAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFY+DASDLRERFEA++HVED
Sbjct: 1   MSFLSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYKDASDLRERFEAHRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVD 116
           LDTID+LI +GEASY+KWRHPDPYIVPWAPGGSKFTRNP PP G+E++  + R D
Sbjct: 61  LDTIDRLIENGEASYDKWRHPDPYIVPWAPGGSKFTRNPIPPAGIEIIYDYGRED 115

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BLAST of ClCG11G003860.1 vs. NCBI nr
Match: gi|1012353749|gb|KYP64937.1| (NADH dehydrogenase [ubiquinone])

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-51
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFEANKHVED 60
           MS +STA YLARRAAQKERVRILYRRALKDTLNWAVHRHLFY DAS+LRERFE N+HVED
Sbjct: 1   MSMASTAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYDDASNLRERFEENRHVED 60

Query: 61  LDTIDKLIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGVEMVGGFVRVDDD 118
            DTID+LIAD EASYNKWRHPDPYIVPWAPGGSKFTRNPTPP+G+E+V  + R ++D
Sbjct: 61  PDTIDRLIADAEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPQGIEIVYNYGREEND 117

The following BLAST results are available for this feature:

BLAST of ClCG11G003860.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUB9_ARATH	1.2e-48	83.33	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thali...	[more]
NDUB9_BOVIN	3.8e-10	34.02	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDU...	[more]
NDUB9_MOUSE	6.4e-10	34.02	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=N...	[more]
NDUB9_PONAB	3.2e-09	34.02	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=N...	[more]
NDUB9_GORGO	1.2e-08	32.99	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla g...	[more]

BLAST of ClCG11G003860.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E0K2_THECC	2.1e-52	83.76	LYR family of Fe/S cluster biogenesis protein OS=Theobroma cacao GN=TCM_006779 P...	[more]
A0A0A0LLB9_CUCSA	2.3e-51	84.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252030 PE=3 SV=1	[more]
A0A151TD23_CAJCA	4.0e-51	82.91	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Cajanus cajan GN=...	[more]
W9R9D4_9ROSA	8.9e-51	83.76	Uncharacterized protein OS=Morus notabilis GN=L484_004478 PE=3 SV=1	[more]
A0A0D2RT13_GOSRA	1.2e-50	82.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1	[more]

BLAST of ClCG11G003860.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34700.1	6.7e-50	83.33	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of ClCG11G003860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122203\|ref\|XP_008461019.1\|	8.0e-53	86.96	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|590685156\|ref\|XP_007042025.1\|	3.0e-52	83.76	LYR family of Fe/S cluster biogenesis protein [Theobroma cacao]	[more]
gi\|702404893\|ref\|XP_010066221.1\|	6.8e-52	86.73	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|449464842\|ref\|XP_004150138.1\|	3.4e-51	84.35	PREDICTED: NADH dehydrogenase [ubiquinone]	[more]
gi\|1012353749\|gb\|KYP64937.1\|	5.7e-51	82.91	NADH dehydrogenase [ubiquinone]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0015992	proton transport
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0045271	respiratory chain complex I
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG11G003860	ClCG11G003860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG11G003860.1	ClCG11G003860.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G003860.1.three_prime_UTR1	ClCG11G003860.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G003860.1.cds5	ClCG11G003860.1.cds5	CDS
ClCG11G003860.1.cds4	ClCG11G003860.1.cds4	CDS
ClCG11G003860.1.cds3	ClCG11G003860.1.cds3	CDS
ClCG11G003860.1.cds2	ClCG11G003860.1.cds2	CDS
ClCG11G003860.1.cds1	ClCG11G003860.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G003860.1.five_prime_UTR1	ClCG11G003860.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 19..72 score: 2.
None	No IPR available	PANTHER	PTHR12868	NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT	coord: 5..108 score: 6.2