ClCG06G003400 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G003400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=221
LocationCG_Chr06 : 4049130 .. 4049924 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGCTTACCTTCAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCATTTCCCTACCATTGCCTTATAAACTCAAGCACTCAAAATCCCACAACCCAAGATTTTTCTTCTCTCCCTTATGCCATAACCATGGTGGACAAGGACCAAGCTCATCCATTTGCCTCAGCTACCCACCATCGTTCGAGCAGCGACAACGGCGAAACAAAATTATATCTAAAGAGAATCCAACGAAGAAGATTCATAAAATGTTGCAGTTTCATAGCCACCCTTCTCATAATACCAACAATAATCATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATTCAAATGAACAGAATTTCAATCACAAAGCTCGAGTTGATCAACGATGTCATACCAAAGCCAGGATCCAACGTGTCACTAACTGCTGACGTGTCAGTGAAAAATCCCAACATGGCATCGTTCAAGTATAGTAACACGACCACTACTTTGTTCATTAATGAGACAGTGATAGGGGAGGCACGAGGGCCGCCAGGGAAAGCCAAGGCACGACGAACGGTGCGAATGAACGTCTCCATCGACATCGTTGCTGATCGAGTCTTGTCGAACCTCGACGATGACGTGAGTTTGGGGAAGGTGAGATTGCAAAGCTTTTCGAGGATTCCGGGGAGGGTAAAGTTGCTGCATCTTATAGGAAGAAATGTTGTTGTCAAAATGAATTGTTCTTTCATGATCAATATCTTCAACAGGTCAATTGAGGATCAGGAATGCAAAAGGAAGGTGAAAATTTAG

mRNA sequence

ATGTCTTTGCTTACCTTCAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCATTTCCCTACCATTGCCTTATAAACTCAAGCACTCAAAATCCCACAACCCAAGATTTTTCTTCTCTCCCTTATGCCATAACCATGGTGGACAAGGACCAAGCTCATCCATTTGCCTCAGCTACCCACCATCGTTCGAGCAGCGACAACGGCGAAACAAAATTATATCTAAAGAGAATCCAACGAAGAAGATTCATAAAATGTTGCAGTTTCATAGCCACCCTTCTCATAATACCAACAATAATCATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATTCAAATGAACAGAATTTCAATCACAAAGCTCGAGTTGATCAACGATGTCATACCAAAGCCAGGATCCAACGTGTCACTAACTGCTGACGTGTCAGTGAAAAATCCCAACATGGCATCGTTCAAGTATAGTAACACGACCACTACTTTGTTCATTAATGAGACAGTGATAGGGGAGGCACGAGGGCCGCCAGGGAAAGCCAAGGCACGACGAACGGTGCGAATGAACGTCTCCATCGACATCGTTGCTGATCGAGTCTTGTCGAACCTCGACGATGACGTGAGTTTGGGGAAGGTGAGATTGCAAAGCTTTTCGAGGATTCCGGGGAGGGTAAAGTTGCTGCATCTTATAGGAAGAAATGTTGTTGTCAAAATGAATTGTTCTTTCATGATCAATATCTTCAACAGGTCAATTGAGGATCAGGAATGCAAAAGGAAGGTGAAAATTTAG

Coding sequence (CDS)

ATGTCTTTGCTTACCTTCAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCATTTCCCTACCATTGCCTTATAAACTCAAGCACTCAAAATCCCACAACCCAAGATTTTTCTTCTCTCCCTTATGCCATAACCATGGTGGACAAGGACCAAGCTCATCCATTTGCCTCAGCTACCCACCATCGTTCGAGCAGCGACAACGGCGAAACAAAATTATATCTAAAGAGAATCCAACGAAGAAGATTCATAAAATGTTGCAGTTTCATAGCCACCCTTCTCATAATACCAACAATAATCATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATTCAAATGAACAGAATTTCAATCACAAAGCTCGAGTTGATCAACGATGTCATACCAAAGCCAGGATCCAACGTGTCACTAACTGCTGACGTGTCAGTGAAAAATCCCAACATGGCATCGTTCAAGTATAGTAACACGACCACTACTTTGTTCATTAATGAGACAGTGATAGGGGAGGCACGAGGGCCGCCAGGGAAAGCCAAGGCACGACGAACGGTGCGAATGAACGTCTCCATCGACATCGTTGCTGATCGAGTCTTGTCGAACCTCGACGATGACGTGAGTTTGGGGAAGGTGAGATTGCAAAGCTTTTCGAGGATTCCGGGGAGGGTAAAGTTGCTGCATCTTATAGGAAGAAATGTTGTTGTCAAAATGAATTGTTCTTTCATGATCAATATCTTCAACAGGTCAATTGAGGATCAGGAATGCAAAAGGAAGGTGAAAATTTAG

Protein sequence

MSLLTFNSTLFNGFKFWAFPYHCLINSSTQNPTTQDFSSLPYAITMVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILMFTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI
Homology
[Close]
BLAST of ClCG06G003400 vs. Swiss-Prot
Match: Y1465_ARATH (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-13
Identity = 58/220 (26.36%), Postives = 114/220 (51.82%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MVD+D+     +  + RS  +    +++ ++ +     KC  +  T+++I    + +IL 
Sbjct: 1   MVDEDRITLAPTEIYGRSDEEQSGPRIWRRKTEEPPG-KCLVYSLTIIVI-IFALCLILS 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTT-T 165
               +I  P I+   IS   L    +    P  N +L +D+S++N N  +F++ ++T   
Sbjct: 61  SIFLRISKPEIETRSISTRDLRSGGNST-NPYFNATLVSDISIRNSNFGAFEFEDSTLRV 120

Query: 166 LFINETVIGEARGPPGKAKARRTVRMN-VSIDIVADRVLS--NLDDDVSLGKVRLQSFSR 225
           ++ +  V+GE +    + +A +TVR+  V ++I + R+L   +LD D+ LG + L+S + 
Sbjct: 121 VYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAE 180

Query: 226 IPGRVKLLHLIGRN--VVVKMNCSFMINIFNRSIEDQECK 260
           + GR+K+L   GR    V  M+C+  +N+  R I++  C+
Sbjct: 181 VRGRIKVL---GRKRWKVSVMSCTMRLNLTGRFIQNLLCE 214

[Close]
BLAST of ClCG06G003400 vs. TrEMBL
Match: A0A0A0KD33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006820 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.5e-100
Identity = 187/219 (85.39%), Postives = 208/219 (94.98%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MVDKDQA P   AT +R SSDNGET+L+LKRIQR+RFIKCCSFI  LL+IPTI+IIIILM
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPIIQMNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGP GKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLH IGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]
BLAST of ClCG06G003400 vs. TrEMBL
Match: A0A061E0Q4_THECC (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative isoform 1 OS=Theobroma cacao GN=TCM_005250 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.9e-65
Identity = 125/221 (56.56%), Postives = 175/221 (79.19%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           +VD+DQ  P A A+    SSD+GE  L LK++QR++ +KCC  IA L+II  ++III L+
Sbjct: 2   VVDRDQVRPLAPASD-LPSSDDGEAALQLKKVQRKKCVKCCGCIAALMIIQAVVIII-LV 61

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FT+F++KDP+I+MN +++T LELIN   PKPGSN+SL ADVSVKNPN+ASFKY NTTTTL
Sbjct: 62  FTVFRVKDPVIKMNGVAVTHLELINGTTPKPGSNISLIADVSVKNPNVASFKYKNTTTTL 121

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIP 225
           +   T++GEARGP G+AKARRT+RMN+S+DI+ DR+L+  NL  DV+ G + + S+SRI 
Sbjct: 122 YYYGTIVGEARGPAGRAKARRTMRMNISVDIITDRLLASPNLVADVNSGTLTMSSYSRIG 181

Query: 226 GRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           GRV +L++I ++V VKMNCS  +NI +++I++Q+CKRKV +
Sbjct: 182 GRVNMLNIIKKHVTVKMNCSMTVNISSQAIQEQKCKRKVDL 220

[Close]
BLAST of ClCG06G003400 vs. TrEMBL
Match: A0A059BZB0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00095 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 6.5e-64
Identity = 124/221 (56.11%), Postives = 171/221 (77.38%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV++DQ  P A +   RS  D  E  ++ K  ++RRFIKCC  IA  ++I  ++III L 
Sbjct: 1   MVERDQVSPLAPSGSLRSDQD--EASVFAKNFRKRRFIKCCGCIAAFMLIQAVVIII-LA 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FT+F++KDP+I+MN ++ITKLELIN  IPKPGSN+SL AD+SVKNPN+ASFKY NTTTTL
Sbjct: 61  FTVFRVKDPVIKMNGVTITKLELINGTIPKPGSNMSLLADISVKNPNVASFKYKNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIP 225
           + + TV+GEARGPPGK++ARRT+RMN+S+DI+ D +LS  NL +D+    + + S+SRIP
Sbjct: 121 YYHGTVVGEARGPPGKSRARRTMRMNISVDIITDMLLSNPNLIEDMKQQLLPMSSYSRIP 180

Query: 226 GRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           GRV +L++I ++V VKMNC+  INI +R+I++Q+CKR V I
Sbjct: 181 GRVNMLNIIKKHVTVKMNCTMTINITSRAIQEQKCKRHVNI 218

[Close]
BLAST of ClCG06G003400 vs. TrEMBL
Match: A5CBV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02080 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 9.8e-60
Identity = 122/222 (54.95%), Postives = 170/222 (76.58%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV+++Q  P A A+H  SS D+  T  +L R++RRR IKC   IA  ++I   ++II L+
Sbjct: 1   MVEREQVRPLAPASHRLSSEDDKVTN-HLSRLRRRRCIKCWGCIAATILIQAAVVII-LV 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVI-PKPGSNVSLTADVSVKNPNMASFKYSNTTTT 165
           FT+F++KDP+I++N  ++ KLELIN    P PG N+SLTADVSVKNPN ASF+Y NTTTT
Sbjct: 61  FTVFRVKDPVIKLNGFTVDKLELINGTTTPGPGVNMSLTADVSVKNPNFASFRYKNTTTT 120

Query: 166 LFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSN--LDDDVSLGKVRLQSFSRI 225
           LF + TVIGEARGPPG+AKARRT++MNV+I+I+ D ++SN  L  D+S G + + ++SR+
Sbjct: 121 LFYSGTVIGEARGPPGQAKARRTMKMNVTIEIILDSLMSNPSLLTDISSGILPMNTYSRV 180

Query: 226 PGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           PGRVK+L +I ++VVVKMNCS  +NI +RSI++Q+CKR V +
Sbjct: 181 PGRVKMLKIIKKHVVVKMNCSVTVNITSRSIQEQKCKRDVNL 220

[Close]
BLAST of ClCG06G003400 vs. TrEMBL
Match: Q19QU4_SOLLC (Plant cell wall protein SlTFR88 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.8e-59
Identity = 122/227 (53.74%), Postives = 172/227 (75.77%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLK-RIQRRRFIKCCSFIATLLIIPTIIIIIIL 105
           MV++DQ  P A A+    SSD+ +T L +K R  +RR  K C+ ++T + +   IIIIIL
Sbjct: 1   MVERDQVRPLAPASDRPHSSDDDDTTLNIKKRFHQRRCFKYCACVSTFVFL-VAIIIIIL 60

Query: 106 MFTLFQIKDPIIQMNRISITKLELINDV-----IPKPGSNVSLTADVSVKNPNMASFKYS 165
           +FT+F+IKDPII MN ++I KL+L+N       IPKPGSN+++ ADVSVKNPN +SFKYS
Sbjct: 61  IFTVFKIKDPIITMNGVTIEKLDLVNTSGTLLPIPKPGSNMTIKADVSVKNPNYSSFKYS 120

Query: 166 NTTTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSN--LDDDVSLGKVRLQ 225
           NTTTT+   + VIGEARGPPGK+KAR+T+RMNV+IDI+ D+++S+  L DD+S G + + 
Sbjct: 121 NTTTTISYRDAVIGEARGPPGKSKARKTMRMNVTIDIMTDKIMSHPGLQDDISSGLLTMN 180

Query: 226 SFSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           S++ + GRVKLL++I + VVVKMNCS  +NI ++SI+DQ+C +KVK+
Sbjct: 181 SYTSVGGRVKLLNMIKKYVVVKMNCSITVNITSQSIQDQKCTKKVKL 226

[Close]
BLAST of ClCG06G003400 vs. TAIR10
Match: AT2G46150.1 (AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 171.4 bits (433), Expect = 7.4e-43
Identity = 93/225 (41.33%), Postives = 145/225 (64.44%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFI-ATLLIIPTIIIIIIL 105
           M D +   P A AT    S ++        R + R  IKC   + AT LI+ TI++ ++ 
Sbjct: 1   MADSEHVRPLAPATILPVSDESASNIKNTHRSRNR--IKCSICVTATSLILTTIVLTLV- 60

Query: 106 MFTLFQIKDPIIQMNRISITKLELINDV--IPKPGSNVSLTADVSVKNPNMASFKYSNTT 165
            FT+F++KDPII+MN + +  L+ +     +   G+N+S+  DVSVKNPN ASFKYSNTT
Sbjct: 61  -FTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTT 120

Query: 166 TTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSN--LDDDVS-LGKVRLQSF 225
           T ++   T++GEA G PGKA+  RT RMNV++DI+ DR+LS+  L  ++S  G V + S+
Sbjct: 121 TDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSY 180

Query: 226 SRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           +R+ G+VK++ ++ ++V VKMNC+  +NI  ++I+D +CK+K+ +
Sbjct: 181 TRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKIDL 221

[Close]
BLAST of ClCG06G003400 vs. TAIR10
Match: AT3G54200.1 (AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-27
Identity = 70/214 (32.71%), Postives = 119/214 (55.61%), Query Frame = 1 

Query: 54  PFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILMFTLFQIKD 113
           P  +A+   + S N  T    K+++R+R  K C     LLI+   I+I+IL FTLF+ K 
Sbjct: 25  PKPNASSMETQSANTGTA---KKLRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKR 84

Query: 114 PIIQMNRISITKLEL-INDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTLFINETVI 173
           P   ++ +++ +L+  +N ++ K   N++L  D+S+KNPN   F Y +++  L     VI
Sbjct: 85  PTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVI 144

Query: 174 GEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIPGRVKLLH 233
           GEA  P  +  AR+TV +N+++ ++ADR+LS   L  DV  G + L +F ++ G+V +L 
Sbjct: 145 GEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLK 204

Query: 234 LIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           +    V    +C   I++ +R++  Q CK   K+
Sbjct: 205 IFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL 235

[Close]
BLAST of ClCG06G003400 vs. TAIR10
Match: AT4G23610.1 (AT4G23610.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-15
Identity = 57/210 (27.14%), Postives = 110/210 (52.38%), Query Frame = 1 

Query: 43  AITMVDKDQAHPFASA-THHRSSSDNGETKLYLKRIQ----RRRFIKCCSFIATLLIIPT 102
           A++ +++DQA P A      RS   + E + +  R +    + + I CC FIA+L ++  
Sbjct: 4   AMSKINEDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTML-I 63

Query: 103 IIIIIILMFTLFQIKDPIIQMNRISIT-KLELINDVIPKPGSNVSLTADVSVKNPNMASF 162
            +  I+L  T+F +  P + ++ IS   + + +N  +     N +++ ++S+ NPN A F
Sbjct: 64  AVTFIVLSLTVFHLHSPNLTVDSISFNQRFDFVNGKV-NTNQNTTVSVEISLHNPNPALF 123

Query: 163 KYSNTTTTLFINE-TVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLD---DDVSLG 222
              N   + +  E  V+GE+        A+RTV+MN++ +IV  ++L++L    +D++  
Sbjct: 124 IVKNVNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGR 183

Query: 223 KVRLQSFSRIPGRVKLLHLIGRNVVVKMNC 243
            V L+S   + GRVK + +  + V ++ +C
Sbjct: 184 GVDLKSSVEVRGRVKKMKIFRKTVHLQTDC 211

[Close]
BLAST of ClCG06G003400 vs. TAIR10
Match: AT1G64065.1 (AT1G64065.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-14
Identity = 58/220 (26.36%), Postives = 114/220 (51.82%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MVD+D+     +  + RS  +    +++ ++ +     KC  +  T+++I    + +IL 
Sbjct: 1   MVDEDRITLAPTEIYGRSDEEQSGPRIWRRKTEEPPG-KCLVYSLTIIVI-IFALCLILS 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTT-T 165
               +I  P I+   IS   L    +    P  N +L +D+S++N N  +F++ ++T   
Sbjct: 61  SIFLRISKPEIETRSISTRDLRSGGNST-NPYFNATLVSDISIRNSNFGAFEFEDSTLRV 120

Query: 166 LFINETVIGEARGPPGKAKARRTVRMN-VSIDIVADRVLS--NLDDDVSLGKVRLQSFSR 225
           ++ +  V+GE +    + +A +TVR+  V ++I + R+L   +LD D+ LG + L+S + 
Sbjct: 121 VYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAE 180

Query: 226 IPGRVKLLHLIGRN--VVVKMNCSFMINIFNRSIEDQECK 260
           + GR+K+L   GR    V  M+C+  +N+  R I++  C+
Sbjct: 181 VRGRIKVL---GRKRWKVSVMSCTMRLNLTGRFIQNLLCE 214

[Close]
BLAST of ClCG06G003400 vs. TAIR10
Match: AT3G05975.1 (AT3G05975.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 75.1 bits (183), Expect = 7.2e-14
Identity = 41/183 (22.40%), Postives = 92/183 (50.27%), Query Frame = 1 

Query: 85  CCSFIATLLIIPTIIIIIILMFTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTA 144
           CC     + ++  I +  +++  +F+ K PI+Q    ++  +     +  +   N +LT 
Sbjct: 7   CCIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGISTNISLPYEVQLNFTLTL 66

Query: 145 DVSVKNPNMASFKYSNTTTTLFINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSN 204
           ++ +KNPN+A F+Y      ++  +T++G    P     A+ +V +   + +  D+ ++N
Sbjct: 67  EMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVAN 126

Query: 205 LD---DDVSLGKVRLQSFSRIPGRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRK 264
           L     DV  GK+ +++ +++PG++ LL +    +    +C+ ++   +  +EDQ C  K
Sbjct: 127 LGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLK 186

[Close]
BLAST of ClCG06G003400 vs. NCBI nr
Match: gi|659116614|ref|XP_008458164.1| (PREDICTED: uncharacterized protein LOC103497685 [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 9.6e-101
Identity = 189/219 (86.30%), Postives = 209/219 (95.43%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV KDQA P   AT  R SSDNGET+L+LKRIQR+RFIKCCSFIA LLIIPTI+IIIILM
Sbjct: 1   MVGKDQAQPLTPATLDRLSSDNGETELHLKRIQRKRFIKCCSFIAALLIIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPII+MNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIRMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGPPGKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPPGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLHLIGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHLIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]
BLAST of ClCG06G003400 vs. NCBI nr
Match: gi|778709203|ref|XP_011656360.1| (PREDICTED: uncharacterized protein LOC105435724 [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 3.6e-100
Identity = 187/219 (85.39%), Postives = 208/219 (94.98%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MVDKDQA P   AT +R SSDNGET+L+LKRIQR+RFIKCCSFI  LL+IPTI+IIIILM
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FTLFQIKDPIIQMNR+SITKLELIN+VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLSNLDDDVSLGKVRLQSFSRIPGR 225
           FINETVIGE RGP GKAKAR+TVRMNV+IDIVADRVLSNL++DVSLGKVRL+SFSRIPG+
Sbjct: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 226 VKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           VKLLH IGRNVVVKMNC+F+INIF++SIEDQ+CKRK+K+
Sbjct: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]
BLAST of ClCG06G003400 vs. NCBI nr
Match: gi|590721704|ref|XP_007051691.1| (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 255.8 bits (652), Expect = 8.5e-65
Identity = 125/221 (56.56%), Postives = 175/221 (79.19%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           +VD+DQ  P A A+    SSD+GE  L LK++QR++ +KCC  IA L+II  ++III L+
Sbjct: 2   VVDRDQVRPLAPASD-LPSSDDGEAALQLKKVQRKKCVKCCGCIAALMIIQAVVIII-LV 61

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FT+F++KDP+I+MN +++T LELIN   PKPGSN+SL ADVSVKNPN+ASFKY NTTTTL
Sbjct: 62  FTVFRVKDPVIKMNGVAVTHLELINGTTPKPGSNISLIADVSVKNPNVASFKYKNTTTTL 121

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIP 225
           +   T++GEARGP G+AKARRT+RMN+S+DI+ DR+L+  NL  DV+ G + + S+SRI 
Sbjct: 122 YYYGTIVGEARGPAGRAKARRTMRMNISVDIITDRLLASPNLVADVNSGTLTMSSYSRIG 181

Query: 226 GRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           GRV +L++I ++V VKMNCS  +NI +++I++Q+CKRKV +
Sbjct: 182 GRVNMLNIIKKHVTVKMNCSMTVNISSQAIQEQKCKRKVDL 220

[Close]
BLAST of ClCG06G003400 vs. NCBI nr
Match: gi|470142034|ref|XP_004306727.1| (PREDICTED: uncharacterized protein LOC101306460 [Fragaria vesca subsp. vesca])

HSP 1 Score: 254.6 bits (649), Expect = 1.9e-64
Identity = 121/221 (54.75%), Postives = 176/221 (79.64%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV+K+QA P A A + R SSD+ E  L++K  +R++FI CC  I  +++I  ++III L 
Sbjct: 1   MVEKEQARPLAPAGY-RPSSDDNEAALHMKIARRKKFINCCGCITAIVLIQAVVIII-LA 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FT+F++K+P I MN++++TKLEL+N   PKPG+N+SLTADVSVKNPN+ASFKYSNTTTTL
Sbjct: 61  FTVFRVKEPKIMMNKVTVTKLELVNGTTPKPGTNISLTADVSVKNPNVASFKYSNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIP 225
           + + TV+GEARGPPG+AKARRT+RMN+++DI+ D + +  NL  DV  G + + S+SRIP
Sbjct: 121 YYHGTVVGEARGPPGRAKARRTMRMNITVDIITDILTTNPNLKTDVGSGLLTMSSYSRIP 180

Query: 226 GRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           GRV +L+++ ++VVVKMNC+  +NI +++I++Q+CKRKV +
Sbjct: 181 GRVNMLNIVKKHVVVKMNCTMTVNISSQAIQEQKCKRKVSL 219

[Close]
BLAST of ClCG06G003400 vs. NCBI nr
Match: gi|702333966|ref|XP_010055074.1| (PREDICTED: uncharacterized protein LOC104443400 [Eucalyptus grandis])

HSP 1 Score: 252.3 bits (643), Expect = 9.4e-64
Identity = 124/221 (56.11%), Postives = 171/221 (77.38%), Query Frame = 1 

Query: 46  MVDKDQAHPFASATHHRSSSDNGETKLYLKRIQRRRFIKCCSFIATLLIIPTIIIIIILM 105
           MV++DQ  P A +   RS  D  E  ++ K  ++RRFIKCC  IA  ++I  ++III L 
Sbjct: 1   MVERDQVSPLAPSGSLRSDQD--EASVFAKNFRKRRFIKCCGCIAAFMLIQAVVIII-LA 60

Query: 106 FTLFQIKDPIIQMNRISITKLELINDVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 165
           FT+F++KDP+I+MN ++ITKLELIN  IPKPGSN+SL AD+SVKNPN+ASFKY NTTTTL
Sbjct: 61  FTVFRVKDPVIKMNGVTITKLELINGTIPKPGSNMSLLADISVKNPNVASFKYKNTTTTL 120

Query: 166 FINETVIGEARGPPGKAKARRTVRMNVSIDIVADRVLS--NLDDDVSLGKVRLQSFSRIP 225
           + + TV+GEARGPPGK++ARRT+RMN+S+DI+ D +LS  NL +D+    + + S+SRIP
Sbjct: 121 YYHGTVVGEARGPPGKSRARRTMRMNISVDIITDMLLSNPNLIEDMKQQLLPMSSYSRIP 180

Query: 226 GRVKLLHLIGRNVVVKMNCSFMINIFNRSIEDQECKRKVKI 265
           GRV +L++I ++V VKMNC+  INI +R+I++Q+CKR V I
Sbjct: 181 GRVNMLNIIKKHVTVKMNCTMTINITSRAIQEQKCKRHVNI 218

The following BLAST results are available for this feature:
BLAST of ClCG06G003400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y1465_ARATH5.8e-1326.36Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana GN=At1g640... [more]
BLAST of ClCG06G003400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD33_CUCSA2.5e-10085.39Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006820 PE=4 SV=1[more]
A0A061E0Q4_THECC5.9e-6556.56Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putat... [more]
A0A059BZB0_EUCGR6.5e-6456.11Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00095 PE=4 SV=1[more]
A5CBV1_VITVI9.8e-6054.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g02080 PE=4 SV=... [more]
Q19QU4_SOLLC2.8e-5953.74Plant cell wall protein SlTFR88 OS=Solanum lycopersicum PE=2 SV=1[more]
BLAST of ClCG06G003400 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46150.17.4e-4341.33 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT3G54200.11.5e-2732.71 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT4G23610.11.0e-1527.14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT1G64065.13.3e-1426.36 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT3G05975.17.2e-1422.40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
BLAST of ClCG06G003400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116614|ref|XP_008458164.1|9.6e-10186.30PREDICTED: uncharacterized protein LOC103497685 [Cucumis melo][more]
gi|778709203|ref|XP_011656360.1|3.6e-10085.39PREDICTED: uncharacterized protein LOC105435724 [Cucumis sativus][more]
gi|590721704|ref|XP_007051691.1|8.5e-6556.56Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putat... [more]
gi|470142034|ref|XP_004306727.1|1.9e-6454.75PREDICTED: uncharacterized protein LOC101306460 [Fragaria vesca subsp. vesca][more]
gi|702333966|ref|XP_010055074.1|9.4e-6456.11PREDICTED: uncharacterized protein LOC104443400 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G003400.1ClCG06G003400.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 146..243
score: 2.0
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 48..264
score: 3.4
NoneNo IPR availablePANTHERPTHR31852:SF6LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEINcoord: 48..264
score: 3.4
NoneNo IPR availableunknownSSF117070LEA14-likecoord: 108..207
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G003400Csa5G152140Cucumber (Chinese Long) v2cuwcgB399
ClCG06G003400Csa6G006820Cucumber (Chinese Long) v2cuwcgB480
ClCG06G003400MELO3C021179Melon (DHL92) v3.5.1mewcgB124
ClCG06G003400MELO3C005720Melon (DHL92) v3.5.1mewcgB032
ClCG06G003400Cla006636Watermelon (97103) v1wcgwmB346
ClCG06G003400Cla011406Watermelon (97103) v1wcgwmB337
ClCG06G003400Cla97C06G112770Watermelon (97103) v2wcgwmbB273
ClCG06G003400Cla97C01G002300Watermelon (97103) v2wcgwmbB255
ClCG06G003400CSPI05G04930Wild cucumber (PI 183967)cpiwcgB416
ClCG06G003400CSPI06G00820Wild cucumber (PI 183967)cpiwcgB507
ClCG06G003400Cucsa.135790Cucumber (Gy14) v1cgywcgB228
ClCG06G003400Cucsa.303600Cucumber (Gy14) v1cgywcgB523
ClCG06G003400CmaCh02G014190Cucurbita maxima (Rimu)cmawcgB564
ClCG06G003400CmaCh17G004580Cucurbita maxima (Rimu)cmawcgB328
ClCG06G003400CmoCh17G004350Cucurbita moschata (Rifu)cmowcgB325
ClCG06G003400CmoCh02G014510Cucurbita moschata (Rifu)cmowcgB561
ClCG06G003400Lsi09G002080Bottle gourd (USVL1VR-Ls)lsiwcgB027
ClCG06G003400Lsi09G015980Bottle gourd (USVL1VR-Ls)lsiwcgB029
ClCG06G003400Cp4.1LG12g03950Cucurbita pepo (Zucchini)cpewcgB144
ClCG06G003400CsGy6G000890Cucumber (Gy14) v2cgybwcgB443
ClCG06G003400CsGy5G002240Cucumber (Gy14) v2cgybwcgB364
ClCG06G003400MELO3C005720.2Melon (DHL92) v3.6.1medwcgB032
ClCG06G003400MELO3C021179.2Melon (DHL92) v3.6.1medwcgB119
ClCG06G003400Carg26025Silver-seed gourdcarwcgB0600
ClCG06G003400Carg02561Silver-seed gourdcarwcgB0904
ClCG06G003400CsaV3_5G002330Cucumber (Chinese Long) v3cucwcgB419
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG06G003400ClCG01G002260Watermelon (Charleston Gray)wcgwcgB105
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G003400Cucurbita maxima (Rimu)cmawcgB800
ClCG06G003400Cucurbita moschata (Rifu)cmowcgB259
ClCG06G003400Cucurbita moschata (Rifu)cmowcgB795
ClCG06G003400Wild cucumber (PI 183967)cpiwcgB252
ClCG06G003400Cucumber (Chinese Long) v2cuwcgB243
ClCG06G003400Melon (DHL92) v3.5.1mewcgB440
ClCG06G003400Watermelon (97103) v1wcgwmB329
ClCG06G003400Cucurbita pepo (Zucchini)cpewcgB178
ClCG06G003400Cucurbita pepo (Zucchini)cpewcgB299
ClCG06G003400Bottle gourd (USVL1VR-Ls)lsiwcgB347
ClCG06G003400Cucumber (Gy14) v2cgybwcgB228
ClCG06G003400Melon (DHL92) v3.6.1medwcgB436
ClCG06G003400Silver-seed gourdcarwcgB0476
ClCG06G003400Silver-seed gourdcarwcgB0586
ClCG06G003400Cucumber (Chinese Long) v3cucwcgB502
ClCG06G003400Watermelon (97103) v2wcgwmbB268
ClCG06G003400Wax gourdwcgwgoB505
ClCG06G003400Watermelon (Charleston Gray)wcgwcgB159
ClCG06G003400Cucumber (Gy14) v1cgywcgB456