Carg02561 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02561
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_009 : 613015 .. 613443 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATTCCAATTATTTATGTTTCTCAGATGGTGGCGTAATCATTGTGGCTAGTGTCTTTGTGCGGAATCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCACGACGGTGATTTACTACCATAACGAGATGATCGGAGAGGGGGAGACGTCGGGGGGAGAGGCGAAGGCAAAGGACACGATGACGATGAATGTGACGGTGGAGATCAAAGCGGAGGAAATGGATGAGGGTTTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATCAGTAGCTACACGGAAATCCCAGGAAGGGTTAAAATAATTGGATTCATCAAGAAAAAGTTTGAGGTTAAAATGGAGTGCTCATTCACTTACAATGCTAAAACCCAAACGATTGAAAAGGAAGATTGTGATCAACATGTAAAAATGTCCGATTAA

mRNA sequence

ATGGAAAATTCCAATTATTTATGTTTCTCAGATGGTGGCGTAATCATTGTGGCTAGTGTCTTTGTGCGGAATCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCACGACGGTGATTTACTACCATAACGAGATGATCGGAGAGGGGGAGACGTCGGGGGGAGAGGCGAAGGCAAAGGACACGATGACGATGAATGTGACGGTGGAGATCAAAGCGGAGGAAATGGATGAGGGTTTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATCAGTAGCTACACGGAAATCCCAGGAAGGGTTAAAATAATTGGATTCATCAAGAAAAAGTTTGAGGTTAAAATGGAGTGCTCATTCACTTACAATGCTAAAACCCAAACGATTGAAAAGGAAGATTGTGATCAACATGTAAAAATGTCCGATTAA

Coding sequence (CDS)

ATGGAAAATTCCAATTATTTATGTTTCTCAGATGGTGGCGTAATCATTGTGGCTAGTGTCTTTGTGCGGAATCCTAATGTTGCGTCGTTCAAATACTCAAAAGCCACGACGGTGATTTACTACCATAACGAGATGATCGGAGAGGGGGAGACGTCGGGGGGAGAGGCGAAGGCAAAGGACACGATGACGATGAATGTGACGGTGGAGATCAAAGCGGAGGAAATGGATGAGGGTTTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATCAGTAGCTACACGGAAATCCCAGGAAGGGTTAAAATAATTGGATTCATCAAGAAAAAGTTTGAGGTTAAAATGGAGTGCTCATTCACTTACAATGCTAAAACCCAAACGATTGAAAAGGAAGATTGTGATCAACATGTAAAAATGTCCGATTAA

Protein sequence

MENSNYLCFSDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCDQHVKMSD

Homology

[Close]

BLAST of Carg02561 vs. NCBI nr
Match: XP_023532981.1 (uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+GG+IIVASVFVRNPN ASFKYSKATTVIYYH E+IGEGET GGEAKAKDTMTMNVTVE
Sbjct: 283 SNGGIIIVASVFVRNPNFASFKYSKATTVIYYHGEVIGEGETPGGEAKAKDTMTMNVTVE 342

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKF VKMECSFTYNAKTQTI
Sbjct: 343 IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFAVKMECSFTYNAKTQTI 402

Query: 130 EKEDCDQHVKMSD 143
           EKEDCDQHVKMSD
Sbjct: 403 EKEDCDQHVKMSD 415

[Close]

BLAST of Carg02561 vs. NCBI nr
Match: XP_022958536.1 (uncharacterized protein LOC111459739 [Cucurbita moschata])

HSP 1 Score: 247.7 bits (631), Expect = 2.4e-62
Identity = 123/133 (92.48%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+GGVIIV SVFVRNPNVASFKY KATTVIYYH++MIGEGET GGEAKAKDTMTMNVT+E
Sbjct: 296 SNGGVIIVVSVFVRNPNVASFKYLKATTVIYYHDKMIGEGETPGGEAKAKDTMTMNVTME 355

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFI+K+FEVKMECSFTYNAKTQTI
Sbjct: 356 IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIRKRFEVKMECSFTYNAKTQTI 415

Query: 130 EKEDCDQHVKMSD 143
           E+EDCDQHVKMSD
Sbjct: 416 EREDCDQHVKMSD 428

[Close]

BLAST of Carg02561 vs. NCBI nr
Match: XP_022995815.1 (uncharacterized protein LOC111491239 [Cucurbita maxima])

HSP 1 Score: 239.6 bits (610), Expect = 6.6e-60
Identity = 120/133 (90.23%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+GG+IIVASVFVRNPNVASFKYSKAT +IYYH  MIGEGET GGEAKAKDTMTMNVTVE
Sbjct: 83  SNGGIIIVASVFVRNPNVASFKYSKATMMIYYHGAMIGEGETPGGEAKAKDTMTMNVTVE 142

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           IKAEEMDEGLSLMEDLKSGGLNISSY EIPGRVKIIGFIKK FEVK+ECSFTYNAKTQTI
Sbjct: 143 IKAEEMDEGLSLMEDLKSGGLNISSYMEIPGRVKIIGFIKKMFEVKLECSFTYNAKTQTI 202

Query: 130 EKEDCDQHVKMSD 143
           EKEDCD+ VK+SD
Sbjct: 203 EKEDCDERVKISD 215

[Close]

BLAST of Carg02561 vs. NCBI nr
Match: XP_008437350.1 (PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 2.4e-41
Identity = 85/132 (64.39%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+ G+I+VASV VRNPNVASFKYSKA+T IYYHN++IGEGET  GE KAKDT+ MNVTV+
Sbjct: 85  SNSGIIVVASVSVRNPNVASFKYSKASTKIYYHNKVIGEGETPPGEVKAKDTLKMNVTVK 144

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           I+  ++D+  SL++D  SG L+ISSYTEIPGRVK++G IKK + VK+ CS TYN+K++TI
Sbjct: 145 IEPWKIDDASSLIKDWNSGALSISSYTEIPGRVKLLGAIKKNYLVKISCSLTYNSKSKTI 204

Query: 130 EKEDCDQHVKMS 142
           +++DCDQ V++S
Sbjct: 205 QRQDCDQRVRIS 216

[Close]

BLAST of Carg02561 vs. NCBI nr
Match: KGN50049.1 (hypothetical protein Csa_5G152140 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 8.9e-41
Identity = 86/132 (65.15%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+ G+I+VASV VRNPNVASFKYSKA+  IYYH+++IGEGET  GE KAKDT+ MNVTVE
Sbjct: 86  SNSGIIVVASVSVRNPNVASFKYSKASIEIYYHDKVIGEGETPPGEVKAKDTLRMNVTVE 145

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           I+  +MD+  SL++D  SG L+ISSYTEIPGRVKI+G IKK + VK+ CS TYN+K++TI
Sbjct: 146 IEPWKMDDASSLIKDWNSGSLSISSYTEIPGRVKILGSIKKNYLVKISCSLTYNSKSKTI 205

Query: 130 EKEDCDQHVKMS 142
           + +DCDQ V++S
Sbjct: 206 QGQDCDQRVRIS 217

[Close]

BLAST of Carg02561 vs. TAIR10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 97.8 bits (242), Expect = 5.6e-21
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 14  VIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAE 73
           + ++  V V+NPN ASFKYS  TT IYY   ++GE     G+A+   T  MNVTV+I  +
Sbjct: 94  ISMIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLD 153

Query: 74  EM--DEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTIEK 133
            +  D GL   E  +SG +N+ SYT + G+VKI+G +KK   VKM C+   N   Q I+ 
Sbjct: 154 RILSDPGLG-REISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQD 213

Query: 134 EDCDQHVKM 141
            DC + + +
Sbjct: 214 VDCKKKIDL 221

[Close]

BLAST of Carg02561 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 24/119 (20.17%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 22  VRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEMDEGLSL 81
           ++NPN   F Y  ++ ++ Y  ++IGE         A+ T+ +N+T+ + A+ +     L
Sbjct: 117 LKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQL 176

Query: 82  MEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCDQHVKM 141
           + D+ +G + ++++ ++ G+V ++   K K +    C  + +   + +  + C    K+
Sbjct: 177 LSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYSTKL 235

[Close]

BLAST of Carg02561 vs. TAIR10
Match: AT1G64065.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-08
Identity = 35/123 (28.46%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 16  IVASVFVRNPNVASFKYSKAT-TVIYYHNEMIGEGETSGGEAKAKDTMTM-NVTVEIKAE 75
           +V+ + +RN N  +F++  +T  V+Y  + ++GE +  G   +A  T+ +  V VEI + 
Sbjct: 94  LVSDISIRNSNFGAFEFEDSTLRVVYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSF 153

Query: 76  EMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVK-MECSFTYNAKTQTIEKE 135
            + +   L +DL+ G L + S  E+ GR+K++G  +K+++V  M C+   N   + I+  
Sbjct: 154 RLLDTKDLDKDLRLGFLELRSVAEVRGRIKVLG--RKRWKVSVMSCTMRLNLTGRFIQNL 213

[Close]

BLAST of Carg02561 vs. TAIR10
Match: AT4G23610.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 16  IVASVFVRNPNVASFKYSKATTVIYYHNEM--IGEGETSGGEAKAKDTMTMNVTVEIKAE 75
           +   + + NPN A F   K   V +YH E+  +GE         AK T+ MN+T EI   
Sbjct: 107 VSVEISLHNPNPALF-IVKNVNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKT 166

Query: 76  EMDEGL-SLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMEC 119
           ++   L  LMEDL   G+++ S  E+ GRVK +   +K   ++ +C
Sbjct: 167 KLLASLPGLMEDLNGRGVDLKSSVEVRGRVKKMKIFRKTVHLQTDC 211

[Close]

BLAST of Carg02561 vs. Swiss-Prot
Match: sp|Q6DST1|Y1465_ARATH (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 35/123 (28.46%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 16  IVASVFVRNPNVASFKYSKAT-TVIYYHNEMIGEGETSGGEAKAKDTMTM-NVTVEIKAE 75
           +V+ + +RN N  +F++  +T  V+Y  + ++GE +  G   +A  T+ +  V VEI + 
Sbjct: 94  LVSDISIRNSNFGAFEFEDSTLRVVYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSF 153

Query: 76  EMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVK-MECSFTYNAKTQTIEKE 135
            + +   L +DL+ G L + S  E+ GR+K++G  +K+++V  M C+   N   + I+  
Sbjct: 154 RLLDTKDLDKDLRLGFLELRSVAEVRGRIKVLG--RKRWKVSVMSCTMRLNLTGRFIQNL 213

[Close]

BLAST of Carg02561 vs. TrEMBL
Match: tr|A0A1S3ATT7|A0A1S3ATT7_CUCME (uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41
Identity = 85/132 (64.39%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+ G+I+VASV VRNPNVASFKYSKA+T IYYHN++IGEGET  GE KAKDT+ MNVTV+
Sbjct: 85  SNSGIIVVASVSVRNPNVASFKYSKASTKIYYHNKVIGEGETPPGEVKAKDTLKMNVTVK 144

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           I+  ++D+  SL++D  SG L+ISSYTEIPGRVK++G IKK + VK+ CS TYN+K++TI
Sbjct: 145 IEPWKIDDASSLIKDWNSGALSISSYTEIPGRVKLLGAIKKNYLVKISCSLTYNSKSKTI 204

Query: 130 EKEDCDQHVKMS 142
           +++DCDQ V++S
Sbjct: 205 QRQDCDQRVRIS 216

[Close]

BLAST of Carg02561 vs. TrEMBL
Match: tr|A0A0A0KMH1|A0A0A0KMH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.9e-41
Identity = 86/132 (65.15%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           S+ G+I+VASV VRNPNVASFKYSKA+  IYYH+++IGEGET  GE KAKDT+ MNVTVE
Sbjct: 86  SNSGIIVVASVSVRNPNVASFKYSKASIEIYYHDKVIGEGETPPGEVKAKDTLRMNVTVE 145

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           I+  +MD+  SL++D  SG L+ISSYTEIPGRVKI+G IKK + VK+ CS TYN+K++TI
Sbjct: 146 IEPWKMDDASSLIKDWNSGSLSISSYTEIPGRVKILGSIKKNYLVKISCSLTYNSKSKTI 205

Query: 130 EKEDCDQHVKMS 142
           + +DCDQ V++S
Sbjct: 206 QGQDCDQRVRIS 217

[Close]

BLAST of Carg02561 vs. TrEMBL
Match: tr|W9SLI7|W9SLI7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006687 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 10  SDGGVIIVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVE 69
           +D  V +VA V V+NPN ASF+Y+  TT ++Y    +GEG  + G+AKA+ T+ MN+TVE
Sbjct: 98  TDKNVTLVAGVSVKNPNAASFRYANTTTTVFYGGAAVGEGWNAAGKAKARRTVKMNLTVE 157

Query: 70  IKAEEMDEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTI 129
           I   +M E   L++D  SG L   SYT I GRVKI   +KKK  VK+ C+ +YN  ++ I
Sbjct: 158 ISTAKMLESPGLLKDWGSGELTFDSYTRIEGRVKITDVVKKKVVVKLNCTVSYNVSSKGI 217

Query: 130 EKEDCDQHVKM 141
           E++ C +HV +
Sbjct: 218 ERQHCKRHVSL 228

[Close]

BLAST of Carg02561 vs. TrEMBL
Match: tr|A0A218VUW8|A0A218VUW8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018857 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-24
Identity = 58/126 (46.03%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 16  IVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEM 75
           +VA V V+NPN ASFKY   TT +YYH  ++GE     G A+A+ TM MN+TV+I  + +
Sbjct: 97  LVADVSVKNPNYASFKYQNTTTTLYYHGALVGEARGPPGRARARRTMRMNITVDIITDRL 156

Query: 76  DEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCD 135
                L  D++SG L++SSY+ IPGRVK+IG I+K   VKM CS T N  +Q I+++ C 
Sbjct: 157 ISSTYLSADVRSGILSMSSYSRIPGRVKMIGIIRKYVIVKMNCSMTVNISSQAIKEQKCK 216

Query: 136 QHVKMS 142
           + V ++
Sbjct: 217 RRVDLN 222

[Close]

BLAST of Carg02561 vs. TrEMBL
Match: tr|A0A2I4GMG7|A0A2I4GMG7_9ROSI (uncharacterized protein LOC109009171 OS=Juglans regia OX=51240 GN=LOC109009171 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 16  IVASVFVRNPNVASFKYSKATTVIYYHNEMIGEGETSGGEAKAKDTMTMNVTVEIKAEEM 75
           + A V V+NPNVASFKY   TT ++Y+  M+GE     G+AK + TM MN+TV+I  +++
Sbjct: 95  LTADVSVKNPNVASFKYKNTTTTLFYNGTMVGEARGPPGQAKPRRTMRMNITVDIITDQL 154

Query: 76  DEGLSLMEDLKSGGLNISSYTEIPGRVKIIGFIKKKFEVKMECSFTYNAKTQTIEKEDCD 135
               +L  D+KS  L++SSY+ IPGRVK+IG IKK   VKM C+FT N  +Q I+ + C 
Sbjct: 155 LSNPNLAADVKSEVLSMSSYSRIPGRVKMIGIIKKHVVVKMNCTFTVNITSQAIQSQKCK 214

Query: 136 QHVKM 141
           + V +
Sbjct: 215 RKVSL 219

The following BLAST results are available for this feature:

BLAST of Carg02561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532981.1	2.2e-63	94.74	uncharacterized protein LOC111794996 [Cucurbita pepo subsp. pepo]	[more]
XP_022958536.1	2.4e-62	92.48	uncharacterized protein LOC111459739 [Cucurbita moschata]	[more]
XP_022995815.1	6.6e-60	90.23	uncharacterized protein LOC111491239 [Cucurbita maxima]	[more]
XP_008437350.1	2.4e-41	64.39	PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo]	[more]
KGN50049.1	8.9e-41	65.15	hypothetical protein Csa_5G152140 [Cucumis sativus]	[more]

BLAST of Carg02561 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46150.1	5.6e-21	41.09	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G54200.1	3.4e-10	20.17	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64065.1	7.1e-08	28.46	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G23610.1	1.2e-07	33.02	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg02561 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6DST1\|Y1465_ARATH	1.3e-06	28.46	Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg02561 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATT7\|A0A1S3ATT7_CUCME	1.6e-41	64.39	uncharacterized protein LOC103482794 OS=Cucumis melo OX=3656 GN=LOC103482794 PE=...	[more]
tr\|A0A0A0KMH1\|A0A0A0KMH1_CUCSA	5.9e-41	65.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152140 PE=4 SV=1	[more]
tr\|W9SLI7\|W9SLI7_9ROSA	1.3e-24	45.04	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006687 PE=4 SV=1	[more]
tr\|A0A218VUW8\|A0A218VUW8_PUNGR	5.0e-24	46.03	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018857 PE=4 SV=1	[more]
tr\|A0A2I4GMG7\|A0A2I4GMG7_9ROSI	1.1e-23	46.40	uncharacterized protein LOC109009171 OS=Juglans regia OX=51240 GN=LOC109009171 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02561-RA	Carg02561-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 22..119 e-value: 7.2E-13 score: 48.9
None	No IPR available	PANTHER	PTHR31852:SF52	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 16..139
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 16..139
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 7..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02561	MELO3C021179	Melon (DHL92) v3.5.1	carmeB0907
Carg02561	ClCG06G003400	Watermelon (Charleston Gray)	carwcgB0904
Carg02561	CSPI06G00820	Wild cucumber (PI 183967)	carcpiB0966
Carg02561	Cucsa.135790	Cucumber (Gy14) v1	carcgyB1038
Carg02561	Lsi09G015980	Bottle gourd (USVL1VR-Ls)	carlsiB835
Carg02561	CsGy6G000890	Cucumber (Gy14) v2	carcgybB0917
Carg02561	MELO3C021179.2	Melon (DHL92) v3.6.1	carmedB0914
Carg02561	Cla97C06G112770	Watermelon (97103) v2	carwmbB0970

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02561	Silver-seed gourd	carcarB448
Carg02561	Cucumber (Gy14) v2	carcgybB0912
Carg02561	Cucumber (Gy14) v1	carcgyB1043
Carg02561	Cucurbita maxima (Rimu)	carcmaB1261
Carg02561	Cucurbita maxima (Rimu)	carcmaB1268
Carg02561	Cucurbita moschata (Rifu)	carcmoB1230
Carg02561	Cucurbita moschata (Rifu)	carcmoB1237
Carg02561	Cucurbita pepo (Zucchini)	carcpeB1271
Carg02561	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02561	Wild cucumber (PI 183967)	carcpiB0961
Carg02561	Cucumber (Chinese Long) v2	carcuB0939
Carg02561	Cucumber (Chinese Long) v3	carcucB0963
Carg02561	Bottle gourd (USVL1VR-Ls)	carlsiB836
Carg02561	Melon (DHL92) v3.5.1	carmeB0903
Carg02561	Melon (DHL92) v3.6.1	carmedB0910
Carg02561	Watermelon (Charleston Gray)	carwcgB0898
Carg02561	Watermelon (97103) v1	carwmB0922
Carg02561	Watermelon (97103) v1	carwmB0925
Carg02561	Watermelon (97103) v2	carwmbB0963
Carg02561	Wax gourd	carwgoB1062
Carg02561	Wax gourd	carwgoB1068