CSPI06G00820 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G00820
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative
Location	Chr6 : 600439 .. 601428 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATGTCTTTGCTTGCCTTTAATTCAACATTGTTCAATGGCTTCAAATTTTGGGCACTTCCCTAAACCATCGCCTTATAAACAAAACTCAATAAGCAGTACTTAAAATCTCTGATAACCTTAAAGTTTTTCTCCACTGTTCCATAACCATGGTGGACAAGGACCAAGCTCAGCCTCTCACTCCAGCTACCCTCAATCGTTTGAGTAGCGACAGCGGCGAAACAAGATTACATCTAAAGAGAATCCAACGAAAAAGATTCATAAAATGTTGCAGTTTCATAGTAGCTCTTCTCATGATTCCAACGATAGTAATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATCCAAATGAATAGAGTTTCAATCACAAAGCTGGAGTTGATCAACAATGTCATACCAAAGCCAGGATCCAACGTGTCACTGACTGCCGATGTGTCAGTAAAAAATCCCAACATGGCATCGTTCAAGTACAGTAACACCACTACAACTCTATTCATCAATGAGACAGTGATAGGGGAGGTACGAGGGCCGTCGGGGAAAGCCAAGGCACGACAAACTGTGCGAATGAATGTCACCATTGACATTGTTGCCGATCGAGTTTTGTCGAACCTCAACAACGATGTGAGCTTGGGGAAGGTGAGATTGAGAAGCTTCTCGAGGATCCCAGGAAAAGTGAAGTTGTTGCATTTTATAGGGAGAAACGTTGTTGTCAAGATGAATTGTACATTCGTGATCAATATATTCAGTAAGTCAATTGAGGATCAGAAATGCAAGAGGAAGATGAAGATGTAGACTTTAATACTATATTTGTTCTTCATTCGAAAGCTGTTTTTTTTGTACACGCTGTGAAATTTAGAGTATGTTAATCTTTTTATATCCTCTATTCTTTTGGTTCTATATATACGAATAGCCTTTACAAAAGTTGTTTCACTCATTTGATCTTTTACCAAAATATCAAAATCTAACATACCTTA

mRNA sequence

ATGGTGGACAAGGACCAAGCTCAGCCTCTCACTCCAGCTACCCTCAATCGTTTGAGTAGCGACAGCGGCGAAACAAGATTACATCTAAAGAGAATCCAACGAAAAAGATTCATAAAATGTTGCAGTTTCATAGTAGCTCTTCTCATGATTCCAACGATAGTAATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATCCAAATGAATAGAGTTTCAATCACAAAGCTGGAGTTGATCAACAATGTCATACCAAAGCCAGGATCCAACGTGTCACTGACTGCCGATGTGTCAGTAAAAAATCCCAACATGGCATCGTTCAAGTACAGTAACACCACTACAACTCTATTCATCAATGAGACAGTGATAGGGGAGGTACGAGGGCCGTCGGGGAAAGCCAAGGCACGACAAACTGTGCGAATGAATGTCACCATTGACATTGTTGCCGATCGAGTTTTGTCGAACCTCAACAACGATGTGAGCTTGGGGAAGGTGAGATTGAGAAGCTTCTCGAGGATCCCAGGAAAAGTGAAGTTGTTGCATTTTATAGGGAGAAACGTTGTTGTCAAGATGAATTGTACATTCGTGATCAATATATTCAGTAAGTCAATTGAGGATCAGAAATGCAAGAGGAAGATGAAGATGTAG

Coding sequence (CDS)

ATGGTGGACAAGGACCAAGCTCAGCCTCTCACTCCAGCTACCCTCAATCGTTTGAGTAGCGACAGCGGCGAAACAAGATTACATCTAAAGAGAATCCAACGAAAAAGATTCATAAAATGTTGCAGTTTCATAGTAGCTCTTCTCATGATTCCAACGATAGTAATCATCATCATCTTGATGTTCACTCTATTTCAAATCAAGGATCCCATAATCCAAATGAATAGAGTTTCAATCACAAAGCTGGAGTTGATCAACAATGTCATACCAAAGCCAGGATCCAACGTGTCACTGACTGCCGATGTGTCAGTAAAAAATCCCAACATGGCATCGTTCAAGTACAGTAACACCACTACAACTCTATTCATCAATGAGACAGTGATAGGGGAGGTACGAGGGCCGTCGGGGAAAGCCAAGGCACGACAAACTGTGCGAATGAATGTCACCATTGACATTGTTGCCGATCGAGTTTTGTCGAACCTCAACAACGATGTGAGCTTGGGGAAGGTGAGATTGAGAAGCTTCTCGAGGATCCCAGGAAAAGTGAAGTTGTTGCATTTTATAGGGAGAAACGTTGTTGTCAAGATGAATTGTACATTCGTGATCAATATATTCAGTAAGTCAATTGAGGATCAGAAATGCAAGAGGAAGATGAAGATGTAG

Homology

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BLAST of CSPI06G00820 vs. Swiss-Prot
Match: Y1465_ARATH (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 56/220 (25.45%), Postives = 112/220 (50.91%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MVD+D+          R   +    R+  ++ +     KC  + + +++I    + +IL 
Sbjct: 1   MVDEDRITLAPTEIYGRSDEEQSGPRIWRRKTEEPPG-KCLVYSLTIIVI-IFALCLILS 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTT-TT 120
               +I  P I+   +S   L    N    P  N +L +D+S++N N  +F++ ++T   
Sbjct: 61  SIFLRISKPEIETRSISTRDLRSGGNST-NPYFNATLVSDISIRNSNFGAFEFEDSTLRV 120

Query: 121 LFINETVIGEVRGPSGKAKARQTVRM-NVTIDIVADRVL--SNLNNDVSLGKVRLRSFSR 180
           ++ +  V+GE +    + +A +TVR+  V ++I + R+L   +L+ D+ LG + LRS + 
Sbjct: 121 VYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAE 180

Query: 181 IPGKVKLLHFIGRN--VVVKMNCTFVINIFSKSIEDQKCK 215
           + G++K+L   GR    V  M+CT  +N+  + I++  C+
Sbjct: 181 VRGRIKVL---GRKRWKVSVMSCTMRLNLTGRFIQNLLCE 214

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BLAST of CSPI06G00820 vs. TrEMBL
Match: A0A0A0KD33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006820 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 9.2e-112
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MVDKDQAQPLTPATLNRLSSD+GETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180
           FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK
Sbjct: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM
Sbjct: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

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BLAST of CSPI06G00820 vs. TrEMBL
Match: A0A061E0Q4_THECC (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative isoform 1 OS=Theobroma cacao GN=TCM_005250 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-61
Identity = 124/221 (56.11%), Postives = 176/221 (79.64%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           +VD+DQ +PL PA+ +  SSD GE  L LK++QRK+ +KCC  I AL++I  +VIII L+
Sbjct: 2   VVDRDQVRPLAPAS-DLPSSDDGEAALQLKKVQRKKCVKCCGCIAALMIIQAVVIII-LV 61

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FT+F++KDP+I+MN V++T LELIN   PKPGSN+SL ADVSVKNPN+ASFKY NTTTTL
Sbjct: 62  FTVFRVKDPVIKMNGVAVTHLELINGTTPKPGSNISLIADVSVKNPNVASFKYKNTTTTL 121

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLS--NLNNDVSLGKVRLRSFSRIP 180
           +   T++GE RGP+G+AKAR+T+RMN+++DI+ DR+L+  NL  DV+ G + + S+SRI 
Sbjct: 122 YYYGTIVGEARGPAGRAKARRTMRMNISVDIITDRLLASPNLVADVNSGTLTMSSYSRIG 181

Query: 181 GKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           G+V +L+ I ++V VKMNC+  +NI S++I++QKCKRK+ +
Sbjct: 182 GRVNMLNIIKKHVTVKMNCSMTVNISSQAIQEQKCKRKVDL 220

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BLAST of CSPI06G00820 vs. TrEMBL
Match: A0A059BZB0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00095 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 121/221 (54.75%), Postives = 167/221 (75.57%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MV++DQ  PL P+    L SD  E  +  K  +++RFIKCC  I A ++I  +VIII L 
Sbjct: 1   MVERDQVSPLAPS--GSLRSDQDEASVFAKNFRKRRFIKCCGCIAAFMLIQAVVIII-LA 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FT+F++KDP+I+MN V+ITKLELIN  IPKPGSN+SL AD+SVKNPN+ASFKY NTTTTL
Sbjct: 61  FTVFRVKDPVIKMNGVTITKLELINGTIPKPGSNMSLLADISVKNPNVASFKYKNTTTTL 120

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLN--NDVSLGKVRLRSFSRIP 180
           + + TV+GE RGP GK++AR+T+RMN+++DI+ D +LSN N   D+    + + S+SRIP
Sbjct: 121 YYHGTVVGEARGPPGKSRARRTMRMNISVDIITDMLLSNPNLIEDMKQQLLPMSSYSRIP 180

Query: 181 GKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           G+V +L+ I ++V VKMNCT  INI S++I++QKCKR + +
Sbjct: 181 GRVNMLNIIKKHVTVKMNCTMTINITSRAIQEQKCKRHVNI 218

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BLAST of CSPI06G00820 vs. TrEMBL
Match: M5X4C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023497mg PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-57
Identity = 125/219 (57.08%), Postives = 167/219 (76.26%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MV+K+Q +PL PA  N  SSD+ E  LH K+   K+FI CC  I ALL+I   V+IIIL 
Sbjct: 1   MVEKEQVRPLAPAA-NGQSSDADEAALHSKKFGLKKFIYCCGGITALLLI-LAVVIIILA 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELIN-NVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTT 120
           FT+F++K+P I+MN+V++T+LELIN N  PKPGSN+SLTADVSVKNPN ASF+Y+NTTTT
Sbjct: 61  FTVFRLKEPKIKMNKVTVTRLELINDNTTPKPGSNISLTADVSVKNPNAASFRYNNTTTT 120

Query: 121 LFINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSN--LNNDVSLGKVRLRSFSRI 180
           L+ +  V+GE  G  GKAKAR+T+RMN+T+D++ DR+ SN     DV  G + + S+SRI
Sbjct: 121 LYYHGVVVGEAHGSPGKAKARRTMRMNITVDVITDRLTSNPKWGADVGSGLLTMSSYSRI 180

Query: 181 PGKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRK 217
           PG+V + + I R+VVVKMNCT  +NI S++I++QKCKRK
Sbjct: 181 PGRVNMWNIIKRHVVVKMNCTMTVNISSQAIQEQKCKRK 217

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BLAST of CSPI06G00820 vs. TrEMBL
Match: B9RDY9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616750 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.5e-56
Identity = 115/221 (52.04%), Postives = 169/221 (76.47%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MV+ +Q +PL P+  +R SSD  E  +HLK+ +R+R IKCC  I A L++P IVI+I L+
Sbjct: 1   MVEHEQVRPLAPSA-DRTSSDDEEATIHLKKTRRRRCIKCCGCITASLLVPAIVIVI-LI 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FT+F++KDP I++N V IT +ELINN IPKPG+N+SL AD+SVKNPN+ SFKY NTT+ L
Sbjct: 61  FTVFRVKDPTIKLNNVIITHMELINNTIPKPGTNISLVADLSVKNPNIVSFKYDNTTSAL 120

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLS--NLNNDVSLGKVRLRSFSRIP 180
           + +  ++GE RGP G +KAR+T+R+N TID+VAD+++S  NLN D + G + + S++++P
Sbjct: 121 YYHGVLVGEARGPPGHSKARRTMRLNATIDLVADKLISNPNLNTDAATGLLTVDSYTKLP 180

Query: 181 GKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           GKVK+L  I ++V +KMNC+  +NI S++I+ QKCK K+ +
Sbjct: 181 GKVKIL-IIKKHVTIKMNCSLTVNISSQAIQSQKCKNKVDL 218

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BLAST of CSPI06G00820 vs. TAIR10
Match: AT2G46150.1 (AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-41
Identity = 94/224 (41.96%), Postives = 144/224 (64.29%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           M D +  +PL PAT+  +S +S     ++K   R R    CS  V    +    I++ L+
Sbjct: 1   MADSEHVRPLAPATILPVSDESAS---NIKNTHRSRNRIKCSICVTATSLILTTIVLTLV 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELIN--NVIPKPGSNVSLTADVSVKNPNMASFKYSNTTT 120
           FT+F++KDPII+MN V +  L+ +   N +   G+N+S+  DVSVKNPN ASFKYSNTTT
Sbjct: 61  FTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTT 120

Query: 121 TLFINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSN--LNNDVS-LGKVRLRSFS 180
            ++   T++GE  G  GKA+  +T RMNVT+DI+ DR+LS+  L  ++S  G V + S++
Sbjct: 121 DIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSYT 180

Query: 181 RIPGKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           R+ GKVK++  + ++V VKMNCT  +NI  ++I+D  CK+K+ +
Sbjct: 181 RVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKIDL 221

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BLAST of CSPI06G00820 vs. TAIR10
Match: AT3G54200.1 (AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 65/193 (33.68%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 30  KRIQRKRFIKCCSFIVALLMIPTIVIIIILMFTLFQIKDPIIQMNRVSITKLEL-INNVI 89
           K+++RKR  K C     LL++   ++I+IL FTLF+ K P   ++ V++ +L+  +N ++
Sbjct: 43  KKLRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLL 102

Query: 90  PKPGSNVSLTADVSVKNPNMASFKYSNTTTTLFINETVIGEVRGPSGKAKARQTVRMNVT 149
            K   N++L  D+S+KNPN   F Y +++  L     VIGE   P+ +  AR+TV +N+T
Sbjct: 103 LKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNIT 162

Query: 150 IDIVADRVLS--NLNNDVSLGKVRLRSFSRIPGKVKLLHFIGRNVVVKMNCTFVINIFSK 209
           + ++ADR+LS   L +DV  G + L +F ++ GKV +L      V    +C   I++  +
Sbjct: 163 LTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDR 222

Query: 210 SIEDQKCKRKMKM 220
           ++  Q CK   K+
Sbjct: 223 NVTSQHCKYSTKL 235

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BLAST of CSPI06G00820 vs. TAIR10
Match: AT4G23610.1 (AT4G23610.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 71.2 bits (173), Expect = 8.7e-13
Identity = 58/206 (28.16%), Postives = 107/206 (51.94%), Query Frame = 1


Query: 2   VDKDQAQPLTPATLN-RLSSDSGETRLHLKRIQ----RKRFIKCCSFIVALLMIPTIVII 61
           +++DQA+PL P  L  R      E + H  R +    + + I CC FI +L M+   V  
Sbjct: 8   INEDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTML-IAVTF 67

Query: 62  IILMFTLFQIKDPIIQMNRVSIT-KLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSN 121
           I+L  T+F +  P + ++ +S   + + +N  +     N +++ ++S+ NPN A F   N
Sbjct: 68  IVLSLTVFHLHSPNLTVDSISFNQRFDFVNGKV-NTNQNTTVSVEISLHNPNPALFIVKN 127

Query: 122 TTTTLFINE-TVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSN---LNNDVSLGKVRL 181
              + +  E  V+GE    S    A++TV+MN+T +IV  ++L++   L  D++   V L
Sbjct: 128 VNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVDL 187

Query: 182 RSFSRIPGKVKLLHFIGRNVVVKMNC 198
           +S   + G+VK +    + V ++ +C
Sbjct: 188 KSSVEVRGRVKKMKIFRKTVHLQTDC 211

[Close]

BLAST of CSPI06G00820 vs. TAIR10
Match: AT3G05975.1 (AT3G05975.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-11
Identity = 45/183 (24.59%), Postives = 93/183 (50.82%), Query Frame = 1


Query: 40  CCSFIVALLMIPTIVIIIILMFTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTA 99
           CC     + ++  I +  +++  +F+ K PI+Q    ++  +    ++  +   N +LT 
Sbjct: 7   CCIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGISTNISLPYEVQLNFTLTL 66

Query: 100 DVSVKNPNMASFKYSNTTTTLFINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSN 159
           ++ +KNPN+A F+Y      ++  +T++G +  PS    A+ +V +   + +  D+ ++N
Sbjct: 67  EMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVAN 126

Query: 160 LN---NDVSLGKVRLRSFSRIPGKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRK 219
           L     DV  GK+ + + +++PGK+ LL      +    +C  V+   S  +EDQ C  K
Sbjct: 127 LGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLK 186

[Close]

BLAST of CSPI06G00820 vs. TAIR10
Match: AT1G64065.1 (AT1G64065.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-10
Identity = 56/220 (25.45%), Postives = 112/220 (50.91%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MVD+D+          R   +    R+  ++ +     KC  + + +++I    + +IL 
Sbjct: 1   MVDEDRITLAPTEIYGRSDEEQSGPRIWRRKTEEPPG-KCLVYSLTIIVI-IFALCLILS 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTT-TT 120
               +I  P I+   +S   L    N    P  N +L +D+S++N N  +F++ ++T   
Sbjct: 61  SIFLRISKPEIETRSISTRDLRSGGNST-NPYFNATLVSDISIRNSNFGAFEFEDSTLRV 120

Query: 121 LFINETVIGEVRGPSGKAKARQTVRM-NVTIDIVADRVL--SNLNNDVSLGKVRLRSFSR 180
           ++ +  V+GE +    + +A +TVR+  V ++I + R+L   +L+ D+ LG + LRS + 
Sbjct: 121 VYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAE 180

Query: 181 IPGKVKLLHFIGRN--VVVKMNCTFVINIFSKSIEDQKCK 215
           + G++K+L   GR    V  M+CT  +N+  + I++  C+
Sbjct: 181 VRGRIKVL---GRKRWKVSVMSCTMRLNLTGRFIQNLLCE 214

[Close]

BLAST of CSPI06G00820 vs. NCBI nr
Match: gi|778709203|ref|XP_011656360.1| (PREDICTED: uncharacterized protein LOC105435724 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.3e-111
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MVDKDQAQPLTPATLNRLSSD+GETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180
           FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK
Sbjct: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM
Sbjct: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]

BLAST of CSPI06G00820 vs. NCBI nr
Match: gi|659116614|ref|XP_008458164.1| (PREDICTED: uncharacterized protein LOC103497685 [Cucumis melo])

HSP 1 Score: 395.6 bits (1015), Expect = 5.7e-107
Identity = 210/219 (95.89%), Postives = 214/219 (97.72%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MV KDQAQPLTPATL+RLSSD+GET LHLKRIQRKRFIKCCSFI ALL+IPTIVIIIILM
Sbjct: 1   MVGKDQAQPLTPATLDRLSSDNGETELHLKRIQRKRFIKCCSFIAALLIIPTIVIIIILM 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FTLFQIKDPII+MNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL
Sbjct: 61  FTLFQIKDPIIRMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180
           FINETVIGEVRGP GKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK
Sbjct: 121 FINETVIGEVRGPPGKAKARQTVRMNVTIDIVADRVLSNLNNDVSLGKVRLRSFSRIPGK 180

Query: 181 VKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           VKLLH IGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM
Sbjct: 181 VKLLHLIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

[Close]

BLAST of CSPI06G00820 vs. NCBI nr
Match: gi|470142034|ref|XP_004306727.1| (PREDICTED: uncharacterized protein LOC101306460 [Fragaria vesca subsp. vesca])

HSP 1 Score: 247.3 bits (630), Expect = 2.5e-62
Identity = 126/221 (57.01%), Postives = 174/221 (78.73%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MV+K+QA+PL PA   R SSD  E  LH+K  +RK+FI CC  I A+++I  +VIII L 
Sbjct: 1   MVEKEQARPLAPAGY-RPSSDDNEAALHMKIARRKKFINCCGCITAIVLIQAVVIII-LA 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FT+F++K+P I MN+V++TKLEL+N   PKPG+N+SLTADVSVKNPN+ASFKYSNTTTTL
Sbjct: 61  FTVFRVKEPKIMMNKVTVTKLELVNGTTPKPGTNISLTADVSVKNPNVASFKYSNTTTTL 120

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLS--NLNNDVSLGKVRLRSFSRIP 180
           + + TV+GE RGP G+AKAR+T+RMN+T+DI+ D + +  NL  DV  G + + S+SRIP
Sbjct: 121 YYHGTVVGEARGPPGRAKARRTMRMNITVDIITDILTTNPNLKTDVGSGLLTMSSYSRIP 180

Query: 181 GKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           G+V +L+ + ++VVVKMNCT  +NI S++I++QKCKRK+ +
Sbjct: 181 GRVNMLNIVKKHVVVKMNCTMTVNISSQAIQEQKCKRKVSL 219

[Close]

BLAST of CSPI06G00820 vs. NCBI nr
Match: gi|590721704|ref|XP_007051691.1| (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 243.0 bits (619), Expect = 4.7e-61
Identity = 124/221 (56.11%), Postives = 176/221 (79.64%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           +VD+DQ +PL PA+ +  SSD GE  L LK++QRK+ +KCC  I AL++I  +VIII L+
Sbjct: 2   VVDRDQVRPLAPAS-DLPSSDDGEAALQLKKVQRKKCVKCCGCIAALMIIQAVVIII-LV 61

Query: 61  FTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNTTTTL 120
           FT+F++KDP+I+MN V++T LELIN   PKPGSN+SL ADVSVKNPN+ASFKY NTTTTL
Sbjct: 62  FTVFRVKDPVIKMNGVAVTHLELINGTTPKPGSNISLIADVSVKNPNVASFKYKNTTTTL 121

Query: 121 FINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLS--NLNNDVSLGKVRLRSFSRIP 180
           +   T++GE RGP+G+AKAR+T+RMN+++DI+ DR+L+  NL  DV+ G + + S+SRI 
Sbjct: 122 YYYGTIVGEARGPAGRAKARRTMRMNISVDIITDRLLASPNLVADVNSGTLTMSSYSRIG 181

Query: 181 GKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           G+V +L+ I ++V VKMNC+  +NI S++I++QKCKRK+ +
Sbjct: 182 GRVNMLNIIKKHVTVKMNCSMTVNISSQAIQEQKCKRKVDL 220

[Close]

BLAST of CSPI06G00820 vs. NCBI nr
Match: gi|694426930|ref|XP_009341124.1| (PREDICTED: uncharacterized protein LOC103933187 [Pyrus x bretschneideri])

HSP 1 Score: 242.7 bits (618), Expect = 6.2e-61
Identity = 125/222 (56.31%), Postives = 176/222 (79.28%), Query Frame = 1


Query: 1   MVDKDQAQPLTPATLNRLSSDSGETRLHLKRIQRKRFIKCCSFIVALLMIPTIVIIIILM 60
           MVD++Q +PL PA ++  SSD+ E   HLK+++R++FIKCC  I A+++I  +VIII L 
Sbjct: 1   MVDREQVRPLAPAAIHP-SSDADEAAFHLKKVRRRKFIKCCGCITAVILIQAVVIII-LA 60

Query: 61  FTLFQIKDPIIQMNRVSITKLELINN-VIPKPGSNVSLTADVSVKNPNMASFKYSNTTTT 120
           FT+F++K+P I+MN+V+IT+LELINN   PKPGSN+SL ADVSVKNPN ASFKY+NTTTT
Sbjct: 61  FTVFRVKEPKIKMNKVTITRLELINNNTAPKPGSNISLIADVSVKNPNFASFKYTNTTTT 120

Query: 121 LFINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLS--NLNNDVSLGKVRLRSFSRI 180
           L+ +  V+GE  G  G AKAR+T+RMN+T+D++ DR+ S  NL  D + G + + S+SRI
Sbjct: 121 LYYHGVVVGEAHGAPGHAKARRTMRMNITVDMITDRLTSDPNLRADFNSGLMTMSSYSRI 180

Query: 181 PGKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 220
           PG+VKLL+ I ++V+VKMNCT  +NI S++I++QKCKRK+K+
Sbjct: 181 PGRVKLLNIIKKHVIVKMNCTMTVNISSQAIQEQKCKRKVKL 220

The following BLAST results are available for this feature:

BLAST of CSPI06G00820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1465_ARATH	1.2e-08	25.45	Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana GN=At1g640...	[more]

BLAST of CSPI06G00820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD33_CUCSA	9.2e-112	99.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G006820 PE=4 SV=1	[more]
A0A061E0Q4_THECC	3.3e-61	56.11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putat...	[more]
A0A059BZB0_EUCGR	1.5e-58	54.75	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00095 PE=4 SV=1	[more]
M5X4C9_PRUPE	1.0e-57	57.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023497mg PE=4 SV=1	[more]
B9RDY9_RICCO	2.5e-56	52.04	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616750 PE=4 SV=1	[more]

BLAST of CSPI06G00820 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46150.1	2.6e-41	41.96	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G54200.1	3.2e-23	33.68	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT4G23610.1	8.7e-13	28.16	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G05975.1	4.8e-11	24.59	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G64065.1	6.9e-10	25.45	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CSPI06G00820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778709203\|ref\|XP_011656360.1\|	1.3e-111	99.54	PREDICTED: uncharacterized protein LOC105435724 [Cucumis sativus]	[more]
gi\|659116614\|ref\|XP_008458164.1\|	5.7e-107	95.89	PREDICTED: uncharacterized protein LOC103497685 [Cucumis melo]	[more]
gi\|470142034\|ref\|XP_004306727.1\|	2.5e-62	57.01	PREDICTED: uncharacterized protein LOC101306460 [Fragaria vesca subsp. vesca]	[more]
gi\|590721704\|ref\|XP_007051691.1\|	4.7e-61	56.11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putat...	[more]
gi\|694426930\|ref\|XP_009341124.1\|	6.2e-61	56.31	PREDICTED: uncharacterized protein LOC103933187 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2
IPR013783	Ig-like_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G00820.1	CSPI06G00820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 101..198 score: 2.1
IPR013783	Immunoglobulin-like fold	GENE3D	G3DSA:2.60.40.10		coord: 93..150 score: 1.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 3..219 score: 6.5
None	No IPR available	PANTHER	PTHR31852:SF6	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 3..219 score: 6.5
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 63..160 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G00820	Cla011406	Watermelon (97103) v1	cpiwmB523
CSPI06G00820	Cla006636	Watermelon (97103) v1	cpiwmB559
CSPI06G00820	Csa5G152140	Cucumber (Chinese Long) v2	cpicuB309
CSPI06G00820	Csa6G006820	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G00820	MELO3C021179	Melon (DHL92) v3.5.1	cpimeB418
CSPI06G00820	MELO3C005720	Melon (DHL92) v3.5.1	cpimeB412
CSPI06G00820	ClCG06G003400	Watermelon (Charleston Gray)	cpiwcgB507
CSPI06G00820	ClCG01G002260	Watermelon (Charleston Gray)	cpiwcgB455
CSPI06G00820	Lsi09G002080	Bottle gourd (USVL1VR-Ls)	cpilsiB408
CSPI06G00820	Lsi09G015980	Bottle gourd (USVL1VR-Ls)	cpilsiB397
CSPI06G00820	MELO3C021179.2	Melon (DHL92) v3.6.1	cpimedB413
CSPI06G00820	MELO3C005720.2	Melon (DHL92) v3.6.1	cpimedB408
CSPI06G00820	CsaV3_5G002330	Cucumber (Chinese Long) v3	cpicucB359
CSPI06G00820	Cla97C06G112770	Watermelon (97103) v2	cpiwmbB499
CSPI06G00820	Cla97C01G002300	Watermelon (97103) v2	cpiwmbB435
CSPI06G00820	Cucsa.303600	Cucumber (Gy14) v1	cgycpiB458
CSPI06G00820	Cucsa.135790	Cucumber (Gy14) v1	cgycpiB198
CSPI06G00820	CmaCh15G012560	Cucurbita maxima (Rimu)	cmacpiB319
CSPI06G00820	CmaCh17G004580	Cucurbita maxima (Rimu)	cmacpiB372
CSPI06G00820	CmaCh02G014190	Cucurbita maxima (Rimu)	cmacpiB647
CSPI06G00820	CmoCh02G014510	Cucurbita moschata (Rifu)	cmocpiB641
CSPI06G00820	CmoCh17G004350	Cucurbita moschata (Rifu)	cmocpiB360
CSPI06G00820	Cp4.1LG12g03950	Cucurbita pepo (Zucchini)	cpecpiB143
CSPI06G00820	CsGy6G000890	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G00820	CsGy5G002240	Cucumber (Gy14) v2	cgybcpiB243
CSPI06G00820	Carg02561	Silver-seed gourd	carcpiB0966
CSPI06G00820	Carg26025	Silver-seed gourd	carcpiB0649

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CSPI06G00820	CSPI05G04930	Wild cucumber (PI 183967)	cpicpiB182

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G00820	Melon (DHL92) v3.6.1	cpimedB487
CSPI06G00820	Cucumber (Gy14) v2	cgybcpiB150
CSPI06G00820	Silver-seed gourd	carcpiB0530
CSPI06G00820	Silver-seed gourd	carcpiB0636
CSPI06G00820	Cucumber (Chinese Long) v3	cpicucB346
CSPI06G00820	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G00820	Watermelon (97103) v2	cpiwmbB492
CSPI06G00820	Wax gourd	cpiwgoB546
CSPI06G00820	Wild cucumber (PI 183967)	cpicpiB140
CSPI06G00820	Cucurbita maxima (Rimu)	cmacpiB925
CSPI06G00820	Cucurbita moschata (Rifu)	cmocpiB310
CSPI06G00820	Cucurbita moschata (Rifu)	cmocpiB903
CSPI06G00820	Cucumber (Chinese Long) v2	cpicuB295
CSPI06G00820	Melon (DHL92) v3.5.1	cpimeB502
CSPI06G00820	Watermelon (Charleston Gray)	cpiwcgB502
CSPI06G00820	Watermelon (97103) v1	cpiwmB516
CSPI06G00820	Cucurbita pepo (Zucchini)	cpecpiB203
CSPI06G00820	Cucurbita pepo (Zucchini)	cpecpiB317
CSPI06G00820	Cucurbita pepo (Zucchini)	cpecpiB632
CSPI06G00820	Bottle gourd (USVL1VR-Ls)	cpilsiB468