ClCG05G010790 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G010790
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ubiquitin-protein ligase, putative
Location	CG_Chr05 : 12245755 .. 12246996 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGAAGATGGTTCAAAATGACCAAGACGCTGAACCAGAGCAAGCTGATGAAGAAAATCCTGTCGTGGAACTGGAGAGCAACATGAAAACGACCGACAAGAAAAGGAGAATCGACTCTCAAAATGTAACATTAATCGATCCTGAAATTCTCGACTGTTATATTTGCTACAAGCCATTGGCCATTCCGATTTTCGAGGTCTGTTTTCTTCACCCACTCTATCCAAATCTTCTTTCTCATTACTAATTTAGGGGGAAATTGAAGCAATGTTTTTGCCCTAATTTAATTAATACTGTATTTGACATTTGTGCGTGTTGATGGGAGATTCATCTTCTTTTACTGCATTTCTAAGTACCATTGCTTTCTTTGCTCTCTTGAAGCTTAAATTGTCAGGCATGAATTATATGCATGCTGCTCTGTAAATACGTTGAACCTGAAAAATCGGACTACCATATGAATTTAAACCCAAACCTGTGTTTCTCTCATGGATTTGTCATTCTTAGGGTTTGTTTTGGGACATTTCTAGTAATTTCTAAGTAGCTACTCCCTGGTTCACACTTAGAAATGATTCTTTATGTTGTAAGAGCTCGCGTCATTGTTAACATGACAATCAATTAATGGAAGTTGTACTCATACTACTACTCTATAACAAATTTGGCTGGATTTGTTGGATATAGTCACTAGTTTCAATGACGGTTCACGACCCAAATCCTTGAACCTTAGTCAAACCCTAGTTTCTCCAAACATTATCACATATGACTGCCAAATTATGGCATAAGTTGTTCGAATGTGGTGCAATGTTGACCACCACATTGTAGTTGTTTCTCCCTAAACTATTAAGGTCAAAGAAATAATTACATGAGAATCATGGAATAAAATTATATATCATCTCCAATATTCATTGTTCGCCATAAAAGAAACATATAATAATTGTAGGACCCATAAAATAAAACAATAAAATATCATCTAATGATGGGTTAAATGTGGGATTAGATAGAAGGAGTATGTATTCCTGTAGTGAATATGGAGTATTCACACATGAAACATTTGTAGTTCATGTTATTTATCTGATTGTTGTAGCTTGCTTCTGATAGTTGTAGTAAAAATGTGGAAGAATGCCCCTTTTGTCATAAGAAAATAGGGGACATCCGTTGTGGAGCTATTGAGAGTGTTTTGGAATCACTCAGTGGAGCCTGTCAAAACTCAAAGTATGGGTGCAAAGCAAAGCCCACAATTTGA

mRNA sequence

ATGGCGACGAAGATGGTTCAAAATGACCAAGACGCTGAACCAGAGCAAGCTGATGAAGAAAATCCTGTCGTGGAACTGGAGAGCAACATGAAAACGACCGACAAGAAAAGGAGAATCGACTCTCAAAATGTAACATTAATCGATCCTGAAATTCTCGACTGTTATATTTGCTACAAGCCATTGGCCATTCCGATTTTCGAGCTTGCTTCTGATAGTTGTAGTAAAAATGTGGAAGAATGCCCCTTTTGTCATAAGAAAATAGGGGACATCCGTTGTGGAGCTATTGAGAGTGTTTTGGAATCACTCAGTGGAGCCTGTCAAAACTCAAAGTATGGGTGCAAAGCAAAGCCCACAATTTGA

Coding sequence (CDS)

ATGGCGACGAAGATGGTTCAAAATGACCAAGACGCTGAACCAGAGCAAGCTGATGAAGAAAATCCTGTCGTGGAACTGGAGAGCAACATGAAAACGACCGACAAGAAAAGGAGAATCGACTCTCAAAATGTAACATTAATCGATCCTGAAATTCTCGACTGTTATATTTGCTACAAGCCATTGGCCATTCCGATTTTCGAGCTTGCTTCTGATAGTTGTAGTAAAAATGTGGAAGAATGCCCCTTTTGTCATAAGAAAATAGGGGACATCCGTTGTGGAGCTATTGAGAGTGTTTTGGAATCACTCAGTGGAGCCTGTCAAAACTCAAAGTATGGGTGCAAAGCAAAGCCCACAATTTGA

Protein sequence

MATKMVQNDQDAEPEQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFELASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCKAKPTI

Homology

[Close]

BLAST of ClCG05G010790 vs. Swiss-Prot
Match: SINL5_ARATH (E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 7   QNDQDAEPEQADEENPVVELESNMKTTDKKRRI--DSQNVTLIDPEILDCYICYKPLAIP 66
           + + + E E+ +EE    E E    TTD++      SQ V L   ++LDC  C +PL  P
Sbjct: 37  EEEFEEEEEELEEEEDEEEEEEENVTTDEQSGSPKSSQPVKLQSSDVLDCPTCCEPLKRP 96

Query: 67  IFELA------SDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCKAKPT 119
           I++ +      S  C K  ++C FC   IGDIRC A+E V+E+    C N+K+GCK   T
Sbjct: 97  IYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTT 156

[Close]

BLAST of ClCG05G010790 vs. Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 11  DAEPEQADEENPVVELESNMKTTDKKRRIDSQ-NVTLIDPEILDCYICYKPLAIPIFELA 70
           D++ E   EE    +  ++  ++  K   DS  +VTL+DP++LDC IC +PL IPIF+  
Sbjct: 72  DSDREVVIEERRFGKFVNSQSSSSSK---DSPLSVTLLDPDVLDCPICCEPLKIPIFQCD 131

Query: 71  SDS------CSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
           +        C+K    CP C   IG +RC A+E V+E+   +C N+KYGCK
Sbjct: 132 NGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCK 179

[Close]

BLAST of ClCG05G010790 vs. Swiss-Prot
Match: SINL7_ARATH (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1


Query: 14  PEQADEENPVVELESNMKTTDK-KRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL---- 73
           P +    N ++  +  + ++D  KR    ++  L+D EILDC ICY+   IPIF+     
Sbjct: 10  PGEGIGSNSILSQKRQLSSSDAAKRDAKKRSTMLMDLEILDCPICYEAFTIPIFQCDNGH 69

Query: 74  --ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
              S  C K   +CP C   +G  RC A+ESVLES+   C N+K GCK
Sbjct: 70  LACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCK 117

[Close]

BLAST of ClCG05G010790 vs. Swiss-Prot
Match: SINL4_ARATH (E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 15  EQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFELASDS-- 74
           + +D E     L   ++T  K+R    ++VTL +  +L+C  C+ PL  PIF+  +    
Sbjct: 47  DDSDSEEDDKPLGDVLRTCRKRRVSSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLA 106

Query: 75  ----CSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCKAKPT 119
               C K  + C FC   IGD+RC A+E V+++   +C N+ YGCK   T
Sbjct: 107 CFLCCIKLKKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTT 156

[Close]

BLAST of ClCG05G010790 vs. Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-11
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 28  SNMKTTDKKRRID-SQNVTLIDPEILDCYICYKPLAIPIFELA------SDSCSKNVEEC 87
           S++ + D ++R+D +++  L D +ILDC ICY+ L IP+F+        S  C K   +C
Sbjct: 18  SSISSDDGRKRVDKTRSAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKC 77

Query: 88  PFCHKKIGDIRCGAIESVLESLSGACQNSKYGC 114
           P C   +G IRC A+E VLES+   C+ +  GC
Sbjct: 78  PACALPVGHIRCRAMERVLESVLVPCRYADLGC 110

[Close]

BLAST of ClCG05G010790 vs. TrEMBL
Match: A0A067JT13_JATCU (E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_02506 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 1


Query: 8   NDQDAEPEQADEENPVVELE---SNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIP 67
           +D D + EQ +E   VV  +   SN++      R     VTL DPE+LDC +CY+ L IP
Sbjct: 68  DDDDDDEEQEEETTEVVTNQIAMSNVRAPIGPTRNGGICVTLTDPEVLDCPVCYESLTIP 127

Query: 68  IFEL------ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
           +F+        S  C K +++CP C   IG  RC AIE VLES+  +CQN KYGCK
Sbjct: 128 VFQCENGHTACSSCCKKLLQKCPTCSLPIGYNRCRAIEKVLESVRLSCQNLKYGCK 183

[Close]

BLAST of ClCG05G010790 vs. TrEMBL
Match: A0A061EG86_THECC (E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_019286 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 11  DAEPEQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL-- 70
           D E E++  E   + LE+N        R  S ++TL DPE+LDC ICY+ L IP+F+   
Sbjct: 70  DEEEEESGAEQGAMSLETN--------RDGSISITLTDPEVLDCSICYEALTIPVFQCEN 129

Query: 71  ----ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
                S  C K   +CP C   IG  RC AIE VLES+  +CQN+KYGC+
Sbjct: 130 GHIACSICCIKIRNKCPSCATPIGYSRCRAIEKVLESVKVSCQNTKYGCR 171

[Close]

BLAST of ClCG05G010790 vs. TrEMBL
Match: A0A061EGM7_THECC (E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_019286 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 11  DAEPEQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL-- 70
           D E E++  E   + LE+N        R  S ++TL DPE+LDC ICY+ L IP+F+   
Sbjct: 70  DEEEEESGAEQGAMSLETN--------RDGSISITLTDPEVLDCSICYEALTIPVFQCEN 129

Query: 71  ----ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
                S  C K   +CP C   IG  RC AIE VLES+  +CQN+KYGC+
Sbjct: 130 GHIACSICCIKIRNKCPSCATPIGYSRCRAIEKVLESVKVSCQNTKYGCR 171

[Close]

BLAST of ClCG05G010790 vs. TrEMBL
Match: A0A0D2QUV9_GOSRA (E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_007G178800 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 7   QNDQDAEPEQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIF 66
           + +++A  E   EE            + +  R  S ++TL DPE+LDC ICY+ L IP+F
Sbjct: 55  EGEEEASEESEGEEELEESGAEQGAMSPQASRDGSISITLTDPEVLDCSICYEALTIPVF 114

Query: 67  EL------ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
           +        S  C K    CP C   IG  RC AIE VLES+   CQN+KYGCK
Sbjct: 115 QCENGHIACSTCCIKMRNRCPSCMTPIGYSRCRAIEKVLESVKVTCQNTKYGCK 168

[Close]

BLAST of ClCG05G010790 vs. TrEMBL
Match: A0A0B0MHD3_GOSAR (E3 ubiquitin-protein ligase OS=Gossypium arboreum GN=F383_23529 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 7   QNDQDAEPEQADEENPVVELESNMKT------------TDKKRRIDSQNVTLIDPEILDC 66
           + D+++E E+A E       ES  +             + +  R  S ++TL DPE+LDC
Sbjct: 43  EEDEESEGEEASEGEEEASEESEREEELEESGAEQGAMSPQTSRDGSISITLTDPEVLDC 102

Query: 67  YICYKPLAIPIFEL------ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQN 115
            ICY+ L IP+++        S  C K    CP C   IG  RC AIE VLES+   CQN
Sbjct: 103 SICYEALTIPVYQCENGHIACSTCCIKMRNRCPSCMTPIGYSRCRAIEKVLESVKVTCQN 162

[Close]

BLAST of ClCG05G010790 vs. TAIR10
Match: AT1G66660.2 (AT1G66660.2 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 77.4 bits (189), Expect = 6.6e-15
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1


Query: 7   QNDQDAEPEQADEENPVVELESNMKTTDKKRRI--DSQNVTLIDPEILDCYICYKPLAIP 66
           + + + E E+ +EE    E E    TTD++      SQ V L   ++LDC  C +PL  P
Sbjct: 57  EEEFEEEEEELEEEEDEEEEEEENVTTDEQSGSPKSSQPVKLQSSDVLDCPTCCEPLKRP 116

Query: 67  IFELA------SDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCKAKPT 119
           I++ +      S  C K  ++C FC   IGDIRC A+E V+E+    C N+K+GCK   T
Sbjct: 117 IYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTT 176

[Close]

BLAST of ClCG05G010790 vs. TAIR10
Match: AT5G37930.1 (AT5G37930.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 77.0 bits (188), Expect = 8.6e-15
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 11  DAEPEQADEENPVVELESNMKTTDKKRRIDSQ-NVTLIDPEILDCYICYKPLAIPIFELA 70
           D++ E   EE    +  ++  ++  K   DS  +VTL+DP++LDC IC +PL IPIF+  
Sbjct: 72  DSDREVVIEERRFGKFVNSQSSSSSK---DSPLSVTLLDPDVLDCPICCEPLKIPIFQCD 131

Query: 71  SDS------CSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
           +        C+K    CP C   IG +RC A+E V+E+   +C N+KYGCK
Sbjct: 132 NGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCK 179

[Close]

BLAST of ClCG05G010790 vs. TAIR10
Match: AT5G37890.1 (AT5G37890.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1


Query: 14  PEQADEENPVVELESNMKTTDK-KRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL---- 73
           P +    N ++  +  + ++D  KR    ++  L+D EILDC ICY+   IPIF+     
Sbjct: 10  PGEGIGSNSILSQKRQLSSSDAAKRDAKKRSTMLMDLEILDCPICYEAFTIPIFQCDNGH 69

Query: 74  --ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
              S  C K   +CP C   +G  RC A+ESVLES+   C N+K GCK
Sbjct: 70  LACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCK 117

[Close]

BLAST of ClCG05G010790 vs. TAIR10
Match: AT1G66650.1 (AT1G66650.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 15  EQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFELASDS-- 74
           + +D E     L   ++T  K+R    ++VTL +  +L+C  C+ PL  PIF+  +    
Sbjct: 47  DDSDSEEDDKPLGDVLRTCRKRRVSSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLA 106

Query: 75  ----CSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCKAKPT 119
               C K  + C FC   IGD+RC A+E V+++   +C N+ YGCK   T
Sbjct: 107 CFLCCIKLKKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTT 156

[Close]

BLAST of ClCG05G010790 vs. TAIR10
Match: AT5G37870.1 (AT5G37870.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 28  SNMKTTDKKRRID-SQNVTLIDPEILDCYICYKPLAIPIFELA------SDSCSKNVEEC 87
           S++ + D ++R+D +++  L D +ILDC ICY+ L IP+F+        S  C K   +C
Sbjct: 18  SSISSDDGRKRVDKTRSAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKC 77

Query: 88  PFCHKKIGDIRCGAIESVLESLSGACQNSKYGC 114
           P C   +G IRC A+E VLES+   C+ +  GC
Sbjct: 78  PACALPVGHIRCRAMERVLESVLVPCRYADLGC 110

[Close]

BLAST of ClCG05G010790 vs. NCBI nr
Match: gi|643706681|gb|KDP22664.1| (hypothetical protein JCGZ_02506 [Jatropha curcas])

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 1


Query: 8   NDQDAEPEQADEENPVVELE---SNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIP 67
           +D D + EQ +E   VV  +   SN++      R     VTL DPE+LDC +CY+ L IP
Sbjct: 68  DDDDDDEEQEEETTEVVTNQIAMSNVRAPIGPTRNGGICVTLTDPEVLDCPVCYESLTIP 127

Query: 68  IFEL------ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
           +F+        S  C K +++CP C   IG  RC AIE VLES+  +CQN KYGCK
Sbjct: 128 VFQCENGHTACSSCCKKLLQKCPTCSLPIGYNRCRAIEKVLESVRLSCQNLKYGCK 183

[Close]

BLAST of ClCG05G010790 vs. NCBI nr
Match: gi|802762064|ref|XP_012089939.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Jatropha curcas])

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 1


Query: 8   NDQDAEPEQADEENPVVELE---SNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIP 67
           +D D + EQ +E   VV  +   SN++      R     VTL DPE+LDC +CY+ L IP
Sbjct: 68  DDDDDDEEQEEETTEVVTNQIAMSNVRAPIGPTRNGGICVTLTDPEVLDCPVCYESLTIP 127

Query: 68  IFEL------ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
           +F+        S  C K +++CP C   IG  RC AIE VLES+  +CQN KYGCK
Sbjct: 128 VFQCENGHTACSSCCKKLLQKCPTCSLPIGYNRCRAIEKVLESVRLSCQNLKYGCK 183

[Close]

BLAST of ClCG05G010790 vs. NCBI nr
Match: gi|802762064|ref|XP_012089939.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Jatropha curcas])

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 28  SNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL-----ASDSCSKNV-EECP 87
           +N      K+R  S  V   D E+LDC IC+KP  IPIF+      A  SC +N+ ++CP
Sbjct: 415 NNSSLNSSKKRSSSVIVKSFDMELLDCPICFKPFDIPIFQCENGHTACSSCCQNIAKKCP 474

Query: 88  FCHKKIGDIRCGAIESVLESLSGACQNSKYGC 114
            C   IG IRC AIE VLES+   C+N KY C
Sbjct: 475 SCAMPIGSIRCRAIEMVLESVQVRCRNVKYRC 506

HSP 2 Score: 88.6 bits (218), Expect = 8.1e-15
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1


Query: 4   KMVQNDQDAEPEQAD-EENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLA 63
           K V      E   A+ +ENPV  +       DK R I   +VT+IDP++LDC ICY+PL 
Sbjct: 37  KEVHEGDGGEARSAEHDENPVGSVSD-----DKDRSI---SVTIIDPDVLDCCICYEPLT 96

Query: 64  IPIFEL------ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
            P+F+        S+ C++   +CP C   IG  RC AIE VLES+  +C N+KYGCK
Sbjct: 97  SPVFQCENGHIACSNCCARLGNKCPMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCK 146

[Close]

BLAST of ClCG05G010790 vs. NCBI nr
Match: gi|590652274|ref|XP_007033105.1| (Ubiquitin-protein ligase, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 88.6 bits (218), Expect = 8.1e-15
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 11  DAEPEQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL-- 70
           D E E++  E   + LE+N        R  S ++TL DPE+LDC ICY+ L IP+F+   
Sbjct: 70  DEEEEESGAEQGAMSLETN--------RDGSISITLTDPEVLDCSICYEALTIPVFQCEN 129

Query: 71  ----ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
                S  C K   +CP C   IG  RC AIE VLES+  +CQN+KYGC+
Sbjct: 130 GHIACSICCIKIRNKCPSCATPIGYSRCRAIEKVLESVKVSCQNTKYGCR 171

[Close]

BLAST of ClCG05G010790 vs. NCBI nr
Match: gi|590652270|ref|XP_007033104.1| (RING/U-box and TRAF-like domains, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 88.6 bits (218), Expect = 8.1e-15
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 11  DAEPEQADEENPVVELESNMKTTDKKRRIDSQNVTLIDPEILDCYICYKPLAIPIFEL-- 70
           D E E++  E   + LE+N        R  S ++TL DPE+LDC ICY+ L IP+F+   
Sbjct: 70  DEEEEESGAEQGAMSLETN--------RDGSISITLTDPEVLDCSICYEALTIPVFQCEN 129

Query: 71  ----ASDSCSKNVEECPFCHKKIGDIRCGAIESVLESLSGACQNSKYGCK 115
                S  C K   +CP C   IG  RC AIE VLES+  +CQN+KYGC+
Sbjct: 130 GHIACSICCIKIRNKCPSCATPIGYSRCRAIEKVLESVKVSCQNTKYGCR 171

The following BLAST results are available for this feature:

BLAST of ClCG05G010790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SINL5_ARATH	1.2e-13	36.67	E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=...	[more]
SIL10_ARATH	1.5e-13	38.74	E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE...	[more]
SINL7_ARATH	4.4e-13	37.96	E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=...	[more]
SINL4_ARATH	2.4e-11	33.64	E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=...	[more]
SINL6_ARATH	2.4e-11	38.71	Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g...	[more]

BLAST of ClCG05G010790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JT13_JATCU	1.1e-15	43.10	E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_02506 PE=3 SV=1	[more]
A0A061EG86_THECC	5.6e-15	43.64	E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_019286 PE=3 SV=1	[more]
A0A061EGM7_THECC	5.6e-15	43.64	E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_019286 PE=3 SV=1	[more]
A0A0D2QUV9_GOSRA	2.8e-14	40.35	E3 ubiquitin-protein ligase OS=Gossypium raimondii GN=B456_007G178800 PE=3 SV=1	[more]
A0A0B0MHD3_GOSAR	3.7e-14	38.10	E3 ubiquitin-protein ligase OS=Gossypium arboreum GN=F383_23529 PE=3 SV=1	[more]

BLAST of ClCG05G010790 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66660.2	6.6e-15	36.67	Protein with RING/U-box and TRAF-like domains	[more]
AT5G37930.1	8.6e-15	38.74	Protein with RING/U-box and TRAF-like domains	[more]
AT5G37890.1	2.5e-14	37.96	Protein with RING/U-box and TRAF-like domains	[more]
AT1G66650.1	1.4e-12	33.64	Protein with RING/U-box and TRAF-like domains	[more]
AT5G37870.1	1.4e-12	38.71	Protein with RING/U-box and TRAF-like domains	[more]

BLAST of ClCG05G010790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|643706681\|gb\|KDP22664.1\|	1.6e-15	43.10	hypothetical protein JCGZ_02506 [Jatropha curcas]	[more]
gi\|802762064\|ref\|XP_012089939.1\|	1.6e-15	43.10	PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Jatropha curcas]	[more]
gi\|802762064\|ref\|XP_012089939.1\|	6.4e-12	45.65	PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Jatropha curcas]	[more]
gi\|590652274\|ref\|XP_007033105.1\|	8.1e-15	43.64	Ubiquitin-protein ligase, putative isoform 2 [Theobroma cacao]	[more]
gi\|590652270\|ref\|XP_007033104.1\|	8.1e-15	43.64	RING/U-box and TRAF-like domains, putative isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004162	SINA-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0007275	multicellular organism development

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G010790.1	ClCG05G010790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004162	E3 ubiquitin-protein ligase SIN-like	PANTHER	PTHR10315	SEVEN IN ABSENTIA HOMOLOG	coord: 5..116 score: 2.1
None	No IPR available	PANTHER	PTHR10315:SF43	E3 UBIQUITIN-PROTEIN LIGASE	coord: 5..116 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G010790	Cla013155	Watermelon (97103) v1	wcgwmB286
ClCG05G010790	Cla97C05G093110	Watermelon (97103) v2	wcgwmbB229
ClCG05G010790	Bhi01G001334	Wax gourd	wcgwgoB427
ClCG05G010790	CSPI03G17530	Wild cucumber (PI 183967)	cpiwcgB237
ClCG05G010790	Cucsa.108380	Cucumber (Gy14) v1	cgywcgB153
ClCG05G010790	CmaCh01G003460	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G010790	CmoCh01G003640	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G010790	Lsi05G002880	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G010790	Cp4.1LG02g16780	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G010790	CsGy3G017560	Cucumber (Gy14) v2	cgybwcgB214
ClCG05G010790	CsaV3_3G017700	Cucumber (Chinese Long) v3	cucwcgB238

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G010790	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G010790	Silver-seed gourd	carwcgB0168
ClCG05G010790	Silver-seed gourd	carwcgB0739
ClCG05G010790	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G010790	Cucumber (Gy14) v1	cgywcgB345
ClCG05G010790	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G010790	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G010790	Cucumber (Chinese Long) v2	cuwcgB230
ClCG05G010790	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G010790	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G010790	Cucumber (Gy14) v2	cgybwcgB217