ClCG05G005610 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G005610
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 5483816 .. 5484246 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAAATCAGATTCAACTCAGAAGTAATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTTGAACTGGGAAGGTATCAAAAAGTCTTCTCTCACATCATACTGATCCTTTCTGAAACAGGGAGTTTTGTCATTCTCAAGAGTCAAGTCCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAAGTAATGGAGTAGTTGTTCCTTGTCTTATGTTATGTTTCTCTCTCTTCACTGCAGTGTAACTCCCTACTTTTTAGTTGGGCTGTTGGTGGCATCTCTATCAATGCCCACATGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

mRNA sequence

ATGAGAGAAATCAGATTCAACTCAGAAGTAATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTTGAACTGGGAAGGTATCAAAAAGTCTTCTCTCACATCATACTGATCCTTTCTGAAACAGGGAGTTTTGTCATTCTCAAGAGTCAAGTCCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAATTGGGCTGTTGGTGGCATCTCTATCAATGCCCACATGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

Coding sequence (CDS)

ATGAGAGAAATCAGATTCAACTCAGAAGTAATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTTGAACTGGGAAGGTATCAAAAAGTCTTCTCTCACATCATACTGATCCTTTCTGAAACAGGGAGTTTTGTCATTCTCAAGAGTCAAGTCCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAATTGGGCTGTTGGTGGCATCTCTATCAATGCCCACATGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

Protein sequence

MREIRFNSEVMKFSKLFVVPTKENFTTARLELGRYQKVFSHIILILSETGSFVILKSQVQLEVIFLSSVEVVGSLLVYLEKGAQQYFTIVNLLLNWAVGGISINAHMTCCVSKTKGET
Homology
[Close]
BLAST of ClCG05G005610 vs. TrEMBL
Match: A0A0A0L8W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150760 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 1   MREIRFNSEVMKFSKLFVVPTKENFTTARLELGRYQKVFSHIILILSETGSFVILKSQVQ 60
           M EI+FNSEVMKFSKLFVVPTKENFTTA L  G YQK       +LSET SFVILKSQV+
Sbjct: 21  MIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFVILKSQVE 80

Query: 61  LEVIFLSSVEVVGSLLVYLEKGAQ---QYFTIVNLLLNWAVGGISINAHMTCCVSKTKGE 119
           LEVIFLSSVEVVGSLLVYLEK +     +    + ++ WAVGGISI+ HMTCCVSK KGE
Sbjct: 81  LEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCCVSKIKGE 140

[Close]
BLAST of ClCG05G005610 vs. NCBI nr
Match: gi|700201914|gb|KGN57047.1| (hypothetical protein Csa_3G150760 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-34
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 1   MREIRFNSEVMKFSKLFVVPTKENFTTARLELGRYQKVFSHIILILSETGSFVILKSQVQ 60
           M EI+FNSEVMKFSKLFVVPTKENFTTA L  G YQK       +LSET SFVILKSQV+
Sbjct: 21  MIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFVILKSQVE 80

Query: 61  LEVIFLSSVEVVGSLLVYLEKGAQ---QYFTIVNLLLNWAVGGISINAHMTCCVSKTKGE 119
           LEVIFLSSVEVVGSLLVYLEK +     +    + ++ WAVGGISI+ HMTCCVSK KGE
Sbjct: 81  LEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCCVSKIKGE 140

The following BLAST results are available for this feature:
BLAST of ClCG05G005610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8W3_CUCSA3.2e-3470.25Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150760 PE=4 SV=1[more]
BLAST of ClCG05G005610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201914|gb|KGN57047.1|4.5e-3470.25hypothetical protein Csa_3G150760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G005610.1ClCG05G005610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G005610Csa3G150760Cucumber (Chinese Long) v2cuwcgB222
ClCG05G005610Cla97C05G087020Watermelon (97103) v2wcgwmbB229
ClCG05G005610CSPI03G13720Wild cucumber (PI 183967)cpiwcgB226
ClCG05G005610CsaV3_3G013950Cucumber (Chinese Long) v3cucwcgB225
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G005610Cucumber (Gy14) v1cgywcgB451
ClCG05G005610Cucumber (Gy14) v1cgywcgB618
ClCG05G005610Cucurbita maxima (Rimu)cmawcgB233
ClCG05G005610Cucurbita maxima (Rimu)cmawcgB320
ClCG05G005610Cucurbita maxima (Rimu)cmawcgB737
ClCG05G005610Cucurbita maxima (Rimu)cmawcgB796
ClCG05G005610Cucurbita moschata (Rifu)cmowcgB219
ClCG05G005610Cucurbita moschata (Rifu)cmowcgB316
ClCG05G005610Cucurbita moschata (Rifu)cmowcgB743
ClCG05G005610Cucurbita moschata (Rifu)cmowcgB792
ClCG05G005610Wild cucumber (PI 183967)cpiwcgB496
ClCG05G005610Cucumber (Chinese Long) v2cuwcgB472
ClCG05G005610Melon (DHL92) v3.5.1mewcgB121
ClCG05G005610Melon (DHL92) v3.5.1mewcgB427
ClCG05G005610Watermelon (97103) v1wcgwmB286
ClCG05G005610Watermelon (97103) v1wcgwmB311
ClCG05G005610Cucurbita pepo (Zucchini)cpewcgB139
ClCG05G005610Cucurbita pepo (Zucchini)cpewcgB293
ClCG05G005610Cucurbita pepo (Zucchini)cpewcgB559
ClCG05G005610Cucurbita pepo (Zucchini)cpewcgB787
ClCG05G005610Bottle gourd (USVL1VR-Ls)lsiwcgB017
ClCG05G005610Bottle gourd (USVL1VR-Ls)lsiwcgB333
ClCG05G005610Cucumber (Gy14) v2cgybwcgB203
ClCG05G005610Cucumber (Gy14) v2cgybwcgB433
ClCG05G005610Melon (DHL92) v3.6.1medwcgB115
ClCG05G005610Melon (DHL92) v3.6.1medwcgB416
ClCG05G005610Silver-seed gourdcarwcgB0072
ClCG05G005610Silver-seed gourdcarwcgB0317
ClCG05G005610Silver-seed gourdcarwcgB0588
ClCG05G005610Silver-seed gourdcarwcgB0807
ClCG05G005610Cucumber (Chinese Long) v3cucwcgB492
ClCG05G005610Watermelon (97103) v2wcgwmbB238
ClCG05G005610Wax gourdwcgwgoB415
ClCG05G005610Wax gourdwcgwgoB426
ClCG05G005610Watermelon (Charleston Gray)wcgwcgB160