CsaV3_3G013950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G013950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 10453001 .. 10453498 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATGATCATGGTCGCCAGAAACCAAAGCAAGCATTTTTTAATGAAAATTGGGAAATGATAGAAATCAAATTCAACTCAGAAGTGATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTGGACTCAGACAGGGATGGTATCAGAAAAGTCTTCTCTCACATCGTAATGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCAAGAGTCAAGTTGAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTATTCTCAAGTAATGGGGTAGTTGCTCCTTGTTTTTATGCTATCATGTTATGTTTCTCACTCTTCACACTGTAACTCCCTACTTTTTAGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATATGACTTGCTGTGTCTCAAAGATCAAAGGGGAAACTTAG

mRNA sequence

ATGAAGTATGATCATGGTCGCCAGAAACCAAAGCAAGCATTTTTTAATGAAAATTGGGAAATGATAGAAATCAAATTCAACTCAGAAGTGATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTGGACTCAGACAGGGATGGTATCAGAAAAGTCTTCTCTCACATCGTAATGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCAAGAGTCAAGTTGAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTATTCTCAAGTAATGGGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATATGACTTGCTGTGTCTCAAAGATCAAAGGGGAAACTTAG

Coding sequence (CDS)

ATGAAGTATGATCATGGTCGCCAGAAACCAAAGCAAGCATTTTTTAATGAAAATTGGGAAATGATAGAAATCAAATTCAACTCAGAAGTGATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTGGACTCAGACAGGGATGGTATCAGAAAAGTCTTCTCTCACATCGTAATGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCAAGAGTCAAGTTGAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTATTCTCAAGTAATGGGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATATGACTTGCTGTGTCTCAAAGATCAAAGGGGAAACTTAG

Protein sequence

MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCCVSKIKGET

Homology

[Close]

BLAST of CsaV3_3G013950 vs. NCBI nr
Match: KGN57047.1 (hypothetical protein Csa_3G150760 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 2.1e-74
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60
           MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL
Sbjct: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60

Query: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120
           SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA
Sbjct: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120

Query: 121 VGGISIDDHMTCCVSKIKGET 142
           VGGISIDDHMTCCVSKIKGET
Sbjct: 121 VGGISIDDHMTCCVSKIKGET 141

[Close]

BLAST of CsaV3_3G013950 vs. TrEMBL
Match: tr|A0A0A0L8W3|A0A0A0L8W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150760 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60
           MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL
Sbjct: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60

Query: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120
           SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA
Sbjct: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120

Query: 121 VGGISIDDHMTCCVSKIKGET 142
           VGGISIDDHMTCCVSKIKGET
Sbjct: 121 VGGISIDDHMTCCVSKIKGET 141

The following BLAST results are available for this feature:

BLAST of CsaV3_3G013950 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57047.1	2.1e-74	100.00	hypothetical protein Csa_3G150760 [Cucumis sativus]	[more]

BLAST of CsaV3_3G013950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G013950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G013950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8W3\|A0A0A0L8W3_CUCSA	1.4e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G013950.1	CsaV3_3G013950.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G013950	CSPI03G13720	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G013950	ClCG05G005610	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G013950	Cla97C05G087020	Watermelon (97103) v2	cucwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G013950	Cucumber (Chinese Long) v3	cuccucB141
CsaV3_3G013950	Silver-seed gourd	carcucB0078
CsaV3_3G013950	Silver-seed gourd	carcucB0355
CsaV3_3G013950	Silver-seed gourd	carcucB0640
CsaV3_3G013950	Silver-seed gourd	carcucB0878
CsaV3_3G013950	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G013950	Cucumber (Gy14) v2	cgybcucB271
CsaV3_3G013950	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G013950	Cucumber (Gy14) v1	cgycucB554
CsaV3_3G013950	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G013950	Cucurbita maxima (Rimu)	cmacucB0425
CsaV3_3G013950	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G013950	Cucurbita maxima (Rimu)	cmacucB1049
CsaV3_3G013950	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G013950	Cucurbita moschata (Rifu)	cmocucB0420
CsaV3_3G013950	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G013950	Cucurbita moschata (Rifu)	cmocucB1032
CsaV3_3G013950	Cucurbita pepo (Zucchini)	cpecucB0154
CsaV3_3G013950	Cucurbita pepo (Zucchini)	cpecucB0385
CsaV3_3G013950	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G013950	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G013950	Wild cucumber (PI 183967)	cpicucB339
CsaV3_3G013950	Bottle gourd (USVL1VR-Ls)	cuclsiB163
CsaV3_3G013950	Bottle gourd (USVL1VR-Ls)	cuclsiB218
CsaV3_3G013950	Melon (DHL92) v3.5.1	cucmeB176
CsaV3_3G013950	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G013950	Melon (DHL92) v3.6.1	cucmedB167
CsaV3_3G013950	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G013950	Watermelon (Charleston Gray)	cucwcgB254
CsaV3_3G013950	Watermelon (97103) v1	cucwmB239
CsaV3_3G013950	Watermelon (97103) v1	cucwmB288
CsaV3_3G013950	Watermelon (97103) v2	cucwmbB233
CsaV3_3G013950	Wax gourd	cucwgoB261
CsaV3_3G013950	Wax gourd	cucwgoB272