CSPI03G13720 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G13720
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 10329342 .. 10329839 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATGATCATGGTCGCCAGAAACCAAAGCAAGCATTTTTTAATGAAAATTGGGAAATGATAGAAATCAAATTCAACTCAGAAGTGATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTGGACTCAGACAGGGATGGTATCAGAAAAGTCTTCTCTCACATCGTAATGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCAAGAGTCAAGTTGAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTATTCTCAAGTAATGGGGTAGTTGCTCCTTGTTTTTATGCTATCATGTTATGTTTCTCACTCTTCACACTGTAACTCCCTACTTTTTAGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATATGACTTGCTGTGTCTCAAAGATCAAAGGGGAAACTTAG

mRNA sequence

ATGAAGTATGATCATGGTCGCCAGAAACCAAAGCAAGCATTTTTTAATGAAAATTGGGAAATGATAGAAATCAAATTCAACTCAGAAGTGATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTGGACTCAGACAGGGATGGTATCAGAAAAGTCTTCTCTCACATCGTAATGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCAAGAGTCAAGTTGAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTATTCTCAAGTAATGGGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATATGACTTGCTGTGTCTCAAAGATCAAAGGGGAAACTTAG

Coding sequence (CDS)

ATGAAGTATGATCATGGTCGCCAGAAACCAAAGCAAGCATTTTTTAATGAAAATTGGGAAATGATAGAAATCAAATTCAACTCAGAAGTGATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTGGACTCAGACAGGGATGGTATCAGAAAAGTCTTCTCTCACATCGTAATGTCCTTTCTGAAACAGAGAGTTTTGTCATTCTCAAGAGTCAAGTTGAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATCTGGAAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTATTCTCAAGTAATGGGTTGGGCTGTTGGTGGCATCTCTATAGATGACCATATGACTTGCTGTGTCTCAAAGATCAAAGGGGAAACTTAG

Homology

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BLAST of CSPI03G13720 vs. TrEMBL
Match: A0A0A0L8W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150760 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60
           MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL
Sbjct: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60

Query: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120
           SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA
Sbjct: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120

Query: 121 VGGISIDDHMTCCVSKIKGET 142
           VGGISIDDHMTCCVSKIKGET
Sbjct: 121 VGGISIDDHMTCCVSKIKGET 141

[Close]

BLAST of CSPI03G13720 vs. NCBI nr
Match: gi|700201914|gb|KGN57047.1| (hypothetical protein Csa_3G150760 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60
           MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL
Sbjct: 1   MKYDHGRQKPKQAFFNENWEMIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLL 60

Query: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120
           SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA
Sbjct: 61  SHRNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWA 120

Query: 121 VGGISIDDHMTCCVSKIKGET 142
           VGGISIDDHMTCCVSKIKGET
Sbjct: 121 VGGISIDDHMTCCVSKIKGET 141

The following BLAST results are available for this feature:

BLAST of CSPI03G13720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G13720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8W3_CUCSA	7.6e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150760 PE=4 SV=1	[more]

BLAST of CSPI03G13720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G13720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201914\|gb\|KGN57047.1\|	1.1e-74	100.00	hypothetical protein Csa_3G150760 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G13720.1	CSPI03G13720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G13720	Csa3G150760	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G13720	ClCG05G005610	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G13720	CsaV3_3G013950	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G13720	Cla97C05G087020	Watermelon (97103) v2	cpiwmbB209

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G13720	Cucumber (Gy14) v1	cgycpiB383
CSPI03G13720	Cucumber (Gy14) v1	cgycpiB538
CSPI03G13720	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G13720	Cucurbita maxima (Rimu)	cmacpiB359
CSPI03G13720	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G13720	Cucurbita maxima (Rimu)	cmacpiB903
CSPI03G13720	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G13720	Cucurbita moschata (Rifu)	cmocpiB352
CSPI03G13720	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G13720	Cucurbita moschata (Rifu)	cmocpiB883
CSPI03G13720	Cucumber (Chinese Long) v2	cpicuB152
CSPI03G13720	Melon (DHL92) v3.5.1	cpimeB174
CSPI03G13720	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G13720	Watermelon (Charleston Gray)	cpiwcgB255
CSPI03G13720	Watermelon (97103) v1	cpiwmB231
CSPI03G13720	Watermelon (97103) v1	cpiwmB281
CSPI03G13720	Cucurbita pepo (Zucchini)	cpecpiB133
CSPI03G13720	Cucurbita pepo (Zucchini)	cpecpiB312
CSPI03G13720	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G13720	Cucurbita pepo (Zucchini)	cpecpiB861
CSPI03G13720	Bottle gourd (USVL1VR-Ls)	cpilsiB149
CSPI03G13720	Bottle gourd (USVL1VR-Ls)	cpilsiB198
CSPI03G13720	Melon (DHL92) v3.6.1	cpimedB165
CSPI03G13720	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G13720	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G13720	Cucumber (Gy14) v2	cgybcpiB266
CSPI03G13720	Silver-seed gourd	carcpiB0074
CSPI03G13720	Silver-seed gourd	carcpiB0355
CSPI03G13720	Silver-seed gourd	carcpiB0639
CSPI03G13720	Silver-seed gourd	carcpiB0874
CSPI03G13720	Cucumber (Chinese Long) v3	cpicucB182
CSPI03G13720	Watermelon (97103) v2	cpiwmbB239
CSPI03G13720	Wax gourd	cpiwgoB258
CSPI03G13720	Wax gourd	cpiwgoB269
CSPI03G13720	Wild cucumber (PI 183967)	cpicpiB129