ClCG05G005610.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG05G005610.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 5483816 .. 5484246 (+)
Sequence length357
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAAATCAGATTCAACTCAGAAGTAATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTTGAACTGGGAAGGTATCAAAAAGTCTTCTCTCACATCATACTGATCCTTTCTGAAACAGGGAGTTTTGTCATTCTCAAGAGTCAAGTCCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAAGTAATGGAGTAGTTGTTCCTTGTCTTATGTTATGTTTCTCTCTCTTCACTGCAGTGTAACTCCCTACTTTTTAGTTGGGCTGTTGGTGGCATCTCTATCAATGCCCACATGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

mRNA sequence

ATGAGAGAAATCAGATTCAACTCAGAAGTAATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTTGAACTGGGAAGGTATCAAAAAGTCTTCTCTCACATCATACTGATCCTTTCTGAAACAGGGAGTTTTGTCATTCTCAAGAGTCAAGTCCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAATTGGGCTGTTGGTGGCATCTCTATCAATGCCCACATGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

Coding sequence (CDS)

ATGAGAGAAATCAGATTCAACTCAGAAGTAATGAAATTTTCGAAACTTTTTGTTGTACCTACCAAGGAAAACTTCACCACAGCTAGACTTGAACTGGGAAGGTATCAAAAAGTCTTCTCTCACATCATACTGATCCTTTCTGAAACAGGGAGTTTTGTCATTCTCAAGAGTCAAGTCCAATTGGAAGTTATTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAAAGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAATTGGGCTGTTGGTGGCATCTCTATCAATGCCCACATGACTTGCTGTGTCTCAAAGACCAAAGGGGAAACTTAG

Protein sequence

MREIRFNSEVMKFSKLFVVPTKENFTTARLELGRYQKVFSHIILILSETGSFVILKSQVQLEVIFLSSVEVVGSLLVYLEKGAQQYFTIVNLLLNWAVGGISINAHMTCCVSKTKGET
Homology
[Close]
BLAST of ClCG05G005610.1 vs. TrEMBL
Match: A0A0A0L8W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150760 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 1   MREIRFNSEVMKFSKLFVVPTKENFTTARLELGRYQKVFSHIILILSETGSFVILKSQVQ 60
           M EI+FNSEVMKFSKLFVVPTKENFTTA L  G YQK       +LSET SFVILKSQV+
Sbjct: 21  MIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFVILKSQVE 80

Query: 61  LEVIFLSSVEVVGSLLVYLEKGAQ---QYFTIVNLLLNWAVGGISINAHMTCCVSKTKGE 119
           LEVIFLSSVEVVGSLLVYLEK +     +    + ++ WAVGGISI+ HMTCCVSK KGE
Sbjct: 81  LEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCCVSKIKGE 140

[Close]
BLAST of ClCG05G005610.1 vs. NCBI nr
Match: gi|700201914|gb|KGN57047.1| (hypothetical protein Csa_3G150760 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-34
Identity = 85/121 (70.25%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 1   MREIRFNSEVMKFSKLFVVPTKENFTTARLELGRYQKVFSHIILILSETGSFVILKSQVQ 60
           M EI+FNSEVMKFSKLFVVPTKENFTTA L  G YQK       +LSET SFVILKSQV+
Sbjct: 21  MIEIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSHRNVLSETESFVILKSQVE 80

Query: 61  LEVIFLSSVEVVGSLLVYLEKGAQ---QYFTIVNLLLNWAVGGISINAHMTCCVSKTKGE 119
           LEVIFLSSVEVVGSLLVYLEK +     +    + ++ WAVGGISI+ HMTCCVSK KGE
Sbjct: 81  LEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVGGISIDDHMTCCVSKIKGE 140

The following BLAST results are available for this feature:
BLAST of ClCG05G005610.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8W3_CUCSA3.2e-3470.25Uncharacterized protein OS=Cucumis sativus GN=Csa_3G150760 PE=4 SV=1[more]
BLAST of ClCG05G005610.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201914|gb|KGN57047.1|4.5e-3470.25hypothetical protein Csa_3G150760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G005610ClCG05G005610gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G005610.1ClCG05G005610.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G005610.1.cds1ClCG05G005610.1.cds1CDS
ClCG05G005610.1.cds2ClCG05G005610.1.cds2CDS