ClCG03G016060 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G016060
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionProgrammed cell death protein 4
LocationCG_Chr03 : 31056711 .. 31057007 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTCAGAGAAGAGCTCGAAGCCAAGCGGAAAATCGGATGCGAGGAAGGATCGCAAATCGGCGACGGGGATGAACGGATCCCCGAAGAAAGGAGGTCACGGCGGCAAGTTCACTTGGGCGGGAGACGGTTACTCTCCAGCCGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCCGAATGAGCCGGTGGCGGTTTGAGTACGATCGGCGATGGCGTATTAGGTCATTTCGAGTCTGAGATTTGTAAATAGTCGTCTTGGTGGACGGTAA

mRNA sequence

ATGAAGAAGTCAGAGAAGAGCTCGAAGCCAAGCGGAAAATCGGATGCGAGGAAGGATCGCAAATCGGCGACGGGGATGAACGGATCCCCGAAGAAAGGAGGTCACGGCGGCAAGTTCACTTGGGCGGGAGACGGTTACTCTCCAGCCGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCCGAATGAGCCGGTGGCGGTCATTTCGAGTCTGAGATTTGTAAATAGTCGTCTTGGTGGACGGTAA

Coding sequence (CDS)

ATGAAGAAGTCAGAGAAGAGCTCGAAGCCAAGCGGAAAATCGGATGCGAGGAAGGATCGCAAATCGGCGACGGGGATGAACGGATCCCCGAAGAAAGGAGGTCACGGCGGCAAGTTCACTTGGGCGGGAGACGGTTACTCTCCAGCCGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCCGAATGAGCCGGTGGCGGTCATTTCGAGTCTGAGATTTGTAAATAGTCGTCTTGGTGGACGGTAA

Protein sequence

MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDVKDPNFEDPNEPVAVISSLRFVNSRLGGR
Homology
[Close]
BLAST of ClCG03G016060 vs. TrEMBL
Match: A0A0A0LWP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-30
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPSGKS+ RKDRKSATGMNGSPKKGGHGGKFTW+GDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPNEPVAV 75
          KDPNFED  E   V
Sbjct: 61 KDPNFEDLEEAETV 74

[Close]
BLAST of ClCG03G016060 vs. TrEMBL
Match: B9RKG3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-25
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 3  KSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDVKD 62
          KS KSS  + KSDAR+DRKSATGM+GSPKKGGHGGKFTWAGDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDPNE 71
          PNFEDP E
Sbjct: 66 PNFEDPEE 73

[Close]
BLAST of ClCG03G016060 vs. TrEMBL
Match: A0A061GU30_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MK + KSSK +GKSD RKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPNEPV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]
BLAST of ClCG03G016060 vs. TrEMBL
Match: A0A0D2PJJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G282100 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.4e-24
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKS-----DARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKA 60
          MK + KSSK +GKS     DARKDRKS TGM+GSPKKGGHGGK+TWAGDG SPAEIGF+ 
Sbjct: 1  MKNTGKSSKGNGKSSSSSADARKDRKSGTGMSGSPKKGGHGGKYTWAGDGLSPAEIGFEK 60

Query: 61 EVMDVKDPNFEDPNEPVAV 75
          EV+DVKDPNFED +E V V
Sbjct: 61 EVIDVKDPNFEDADEIVTV 79

[Close]
BLAST of ClCG03G016060 vs. TrEMBL
Match: I3NMQ6_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-23
Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = 1 

Query: 1  MKKSEKSSKPSG--KSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVM 60
          MK + KSSK +   KSD RKDRKSATGM+GSPKKGGHGGKFTWAGDGYS AEIG + E +
Sbjct: 1  MKNTVKSSKTNANSKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSQAEIGLQGEAV 60

Query: 61 DVKDPNFEDPNEPVAV 75
          DVKDPNFEDP E   V
Sbjct: 61 DVKDPNFEDPEETETV 76

[Close]
BLAST of ClCG03G016060 vs. NCBI nr
Match: gi|700211092|gb|KGN66188.1| (hypothetical protein Csa_1G575040 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-30
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPSGKS+ RKDRKSATGMNGSPKKGGHGGKFTW+GDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPNEPVAV 75
          KDPNFED  E   V
Sbjct: 61 KDPNFEDLEEAETV 74

[Close]
BLAST of ClCG03G016060 vs. NCBI nr
Match: gi|223546663|gb|EEF48161.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-25
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 3  KSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDVKD 62
          KS KSS  + KSDAR+DRKSATGM+GSPKKGGHGGKFTWAGDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDPNE 71
          PNFEDP E
Sbjct: 66 PNFEDPEE 73

[Close]
BLAST of ClCG03G016060 vs. NCBI nr
Match: gi|590576614|ref|XP_007013005.1| (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MK + KSSK +GKSD RKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPNEPV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]
BLAST of ClCG03G016060 vs. NCBI nr
Match: gi|823154661|ref|XP_012477212.1| (PREDICTED: programmed cell death protein 4-like [Gossypium raimondii])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKS-----DARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKA 60
          MK + KSSK +GKS     DARKDRKS TGM+GSPKKGGHGGK+TWAGDG SPAEIGF+ 
Sbjct: 1  MKNTGKSSKGNGKSSSSSADARKDRKSGTGMSGSPKKGGHGGKYTWAGDGLSPAEIGFEK 60

Query: 61 EVMDVKDPNFEDPNEPVAV 75
          EV+DVKDPNFED +E V V
Sbjct: 61 EVIDVKDPNFEDADEIVTV 79

[Close]
BLAST of ClCG03G016060 vs. NCBI nr
Match: gi|743894075|ref|XP_011040285.1| (PREDICTED: programmed cell death protein 4-like [Populus euphratica])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1 

Query: 1  MKKSEKSSKPSG-KSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMD 60
          MK+S KSS  +  KSDARKDRKS TGM+GSPKKGGHGGKFTW GDGYS AEIGF+ E +D
Sbjct: 1  MKRSSKSSSSNNPKSDARKDRKSGTGMSGSPKKGGHGGKFTWVGDGYSNAEIGFEKEAVD 60

Query: 61 VKDPNFEDPNE 71
          VKDPNFEDP E
Sbjct: 61 VKDPNFEDPEE 71

The following BLAST results are available for this feature:
BLAST of ClCG03G016060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWP4_CUCSA1.6e-3089.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575040 PE=4 SV=1[more]
B9RKG3_RICCO5.8e-2579.41Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1[more]
A0A061GU30_THECC5.8e-2577.78Uncharacterized protein OS=Theobroma cacao GN=TCM_037765 PE=4 SV=1[more]
A0A0D2PJJ0_GOSRA8.4e-2473.42Uncharacterized protein OS=Gossypium raimondii GN=B456_004G282100 PE=4 SV=1[more]
I3NMQ6_HEVBR3.2e-2373.68Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1[more]
BLAST of ClCG03G016060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211092|gb|KGN66188.1|2.3e-3089.19hypothetical protein Csa_1G575040 [Cucumis sativus][more]
gi|223546663|gb|EEF48161.1|8.3e-2579.41conserved hypothetical protein [Ricinus communis][more]
gi|590576614|ref|XP_007013005.1|8.3e-2577.78Uncharacterized protein TCM_037765 [Theobroma cacao][more]
gi|823154661|ref|XP_012477212.1|1.2e-2373.42PREDICTED: programmed cell death protein 4-like [Gossypium raimondii][more]
gi|743894075|ref|XP_011040285.1|2.7e-2377.46PREDICTED: programmed cell death protein 4-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G016060.1ClCG03G016060.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12626PROGRAMMED CELL DEATH 4coord: 1..70
score: 9.9
NoneNo IPR availablePANTHERPTHR12626:SF5SUBFAMILY NOT NAMEDcoord: 1..70
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G016060Csa1G575040Cucumber (Chinese Long) v2cuwcgB046
ClCG03G016060MELO3C015421Melon (DHL92) v3.5.1mewcgB245
ClCG03G016060Cla011254Watermelon (97103) v1wcgwmB224
ClCG03G016060Cla97C03G066360Watermelon (97103) v2wcgwmbB186
ClCG03G016060Bhi02G001620Wax gourdwcgwgoB362
ClCG03G016060CSPI01G27640Wild cucumber (PI 183967)cpiwcgB049
ClCG03G016060Cucsa.288740Cucumber (Gy14) v1cgywcgB505
ClCG03G016060CmaCh11G006550Cucurbita maxima (Rimu)cmawcgB113
ClCG03G016060CmoCh11G006670Cucurbita moschata (Rifu)cmowcgB101
ClCG03G016060Lsi06G002260Bottle gourd (USVL1VR-Ls)lsiwcgB364
ClCG03G016060Cp4.1LG04g10460Cucurbita pepo (Zucchini)cpewcgB599
ClCG03G016060MELO3C015421.2Melon (DHL92) v3.6.1medwcgB237
ClCG03G016060Carg12247Silver-seed gourdcarwcgB0038
ClCG03G016060CsaV3_1G039900Cucumber (Chinese Long) v3cucwcgB050
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G016060Wild cucumber (PI 183967)cpiwcgB140
ClCG03G016060Wild cucumber (PI 183967)cpiwcgB222
ClCG03G016060Cucumber (Chinese Long) v2cuwcgB134
ClCG03G016060Cucumber (Chinese Long) v2cuwcgB218
ClCG03G016060Melon (DHL92) v3.5.1mewcgB329
ClCG03G016060Melon (DHL92) v3.5.1mewcgB378
ClCG03G016060Watermelon (97103) v1wcgwmB234
ClCG03G016060Watermelon (97103) v1wcgwmB247
ClCG03G016060Cucurbita pepo (Zucchini)cpewcgB107
ClCG03G016060Cucurbita pepo (Zucchini)cpewcgB321
ClCG03G016060Cucurbita pepo (Zucchini)cpewcgB505
ClCG03G016060Cucurbita pepo (Zucchini)cpewcgB552
ClCG03G016060Cucurbita pepo (Zucchini)cpewcgB737
ClCG03G016060Bottle gourd (USVL1VR-Ls)lsiwcgB103
ClCG03G016060Bottle gourd (USVL1VR-Ls)lsiwcgB398
ClCG03G016060Cucumber (Gy14) v2cgybwcgB043
ClCG03G016060Cucumber (Gy14) v2cgybwcgB128
ClCG03G016060Cucumber (Gy14) v2cgybwcgB201
ClCG03G016060Melon (DHL92) v3.6.1medwcgB323
ClCG03G016060Melon (DHL92) v3.6.1medwcgB372
ClCG03G016060Silver-seed gourdcarwcgB0094
ClCG03G016060Silver-seed gourdcarwcgB0196
ClCG03G016060Silver-seed gourdcarwcgB0555
ClCG03G016060Silver-seed gourdcarwcgB0875
ClCG03G016060Cucumber (Chinese Long) v3cucwcgB146
ClCG03G016060Cucumber (Chinese Long) v3cucwcgB223
ClCG03G016060Watermelon (97103) v2wcgwmbB177
ClCG03G016060Watermelon (97103) v2wcgwmbB193
ClCG03G016060Wax gourdwcgwgoB327
ClCG03G016060Wax gourdwcgwgoB328
ClCG03G016060Watermelon (Charleston Gray)wcgwcgB064
ClCG03G016060Watermelon (Charleston Gray)wcgwcgB146
ClCG03G016060Cucumber (Gy14) v1cgywcgB172
ClCG03G016060Cucurbita maxima (Rimu)cmawcgB057
ClCG03G016060Cucurbita maxima (Rimu)cmawcgB158
ClCG03G016060Cucurbita maxima (Rimu)cmawcgB402
ClCG03G016060Cucurbita maxima (Rimu)cmawcgB698
ClCG03G016060Cucurbita moschata (Rifu)cmowcgB049
ClCG03G016060Cucurbita moschata (Rifu)cmowcgB147
ClCG03G016060Cucurbita moschata (Rifu)cmowcgB213
ClCG03G016060Cucurbita moschata (Rifu)cmowcgB402
ClCG03G016060Cucurbita moschata (Rifu)cmowcgB702