Cucsa.288740 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.288740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionProgrammed cell death-4
Locationscaffold02698 : 270197 .. 271002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATCCACTGTTGAGAAACGAATCACCCGAATCGGCGACAAGAAGATATGAAGAAATCAGAGAAGAGTTCGAAGCCAAGCGGGAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACGGGAATGAACGGATCACCGAAGAAAGGAGGCCACGGTGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGAGACGGTGGCGGTGGCGGTTTGATTAGGTCATTTTGGAATTTGAGATTTGTAAATAGACTTCATGAACGGTAAAAaTAAAAATCCGTGGTTTTTCCATTTGTATAAAATCACGCAGCAGCATCGTTTTGTACAGTTTTCTTGATATCTATAAATTTCATTGTCGATCTTCGTTTTTTCGTGTTGAAGAAAAAATGAAAACAAGAAAACAGTGAGAAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAATTCGTCTTCAGGGATTGAAGAATGGGAAGGAAATTGGTTATTAATAGTTACAAATTTGTTGGTCAAACTTGGGGATCACGGTGGAATTAAAATTTGAATGTGGTGTTCAAGCAAGTTCTTGGCGTGTGCATTTTGATATGATGCGAGTGTGTAAGGTAAGGATTAAAGCTTGAGTTATAACTTGGTCTAAGTCATCAAATTTATATAGTAAAATAGATGTTAATGATTCGATCCCATACATTTGGATTATATGGGTAGAATCAATTGACATGTCTTAACTTGGAAAATGAAGCTC

mRNA sequence

CCATCCACTGTTGAGAAACGAATCACCCGAATCGGCGACAAGAAGATATGAAGAAATCAGAGAAGAGTTCGAAGCCAAGCGGGAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACGGGAATGAACGGATCACCGAAGAAAGGAGGCCACGGTGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGAGACGGTGGCGGTGGCGGTTTGATTAGGTCATTTTGGAATTTGAGATTTGTAAATAGACTTCATGAACGGTAAAAATAAAAATCCGTGGTTTTTCCATTTGTATAAAATCACGCAGCAGCATCGTTTTGTACAGTTTTCTTGATATCTATAAATTTCATTGTCGATCTTCGTTTTTTCGTGTTGAAGAAAAAATGAAAACAAGAAAACAGTGAGAAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAATTCGTCTTCAGGGATTGAAGAATGGGAAGGAAATTGGTTATTAATAGTTACAAATTTGTTGGTCAAACTTGGGGATCACGGTGGAATTAAAATTTGAATGTGGTGTTCAAGCAAGTTCTTGGCGTGTGCATTTTGATATGATGCGAGTGTGTAAGGTAAGGATTAAAGCTTGAGTTATAACTTGGTCTAAGTCATCAAATTTATATAGTAAAATAGATGTTAATGATTCGATCCCATACATTTGGATTATATGGGTAGAATCAATTGACATGTCTTAACTTGGAAAATGAAGCTC

Coding sequence (CDS)

ATGAAGAAATCAGAGAAGAGTTCGAAGCCAAGCGGGAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACGGGAATGAACGGATCACCGAAGAAAGGAGGCCACGGTGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGAGACGGTGGCGGTGGCGGTTTGA

Protein sequence

MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKDPNFEDLEEAETVAVAV*
Homology
[Close]
BLAST of Cucsa.288740 vs. TrEMBL
Match: A0A0A0LWP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.9e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAETVAVAV 79
          KDPNFEDLEEAETVAVAV
Sbjct: 61 KDPNFEDLEEAETVAVAV 78

[Close]
BLAST of Cucsa.288740 vs. TrEMBL
Match: A0A061GU30_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-24
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + KSSK +GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDLEEAET 74
          KDPNFED +E  T
Sbjct: 61 KDPNFEDPDEIVT 73

[Close]
BLAST of Cucsa.288740 vs. TrEMBL
Match: I3NMQ6_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-24
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 1  MKKSEKSSKPSG--KSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVM 60
          MK + KSSK +   KS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYS AEIG + E +
Sbjct: 1  MKNTVKSSKTNANSKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSQAEIGLQGEAV 60

Query: 61 DVKDPNFEDLEEAETV 75
          DVKDPNFED EE ETV
Sbjct: 61 DVKDPNFEDPEETETV 76

[Close]
BLAST of Cucsa.288740 vs. TrEMBL
Match: B9RKG3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-23
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 1 

Query: 3  KSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKD 62
          KS KSS  + KS+ R+DRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDLEE-AETV 75
          PNFED EE AET+
Sbjct: 66 PNFEDPEETAETL 78

[Close]
BLAST of Cucsa.288740 vs. TrEMBL
Match: A0A0D2PJJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G282100 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-23
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKS-----EVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKA 60
          MK + KSSK +GKS     + RKDRKS TGM+GSPKKGGHGGK+TW+GDG SPAEIGF+ 
Sbjct: 1  MKNTGKSSKGNGKSSSSSADARKDRKSGTGMSGSPKKGGHGGKYTWAGDGLSPAEIGFEK 60

Query: 61 EVMDVKDPNFEDLEEAETV 75
          EV+DVKDPNFED +E  TV
Sbjct: 61 EVIDVKDPNFEDADEIVTV 79

[Close]
BLAST of Cucsa.288740 vs. NCBI nr
Match: gi|700211092|gb|KGN66188.1| (hypothetical protein Csa_1G575040 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.5e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAETVAVAV 79
          KDPNFEDLEEAETVAVAV
Sbjct: 61 KDPNFEDLEEAETVAVAV 78

[Close]
BLAST of Cucsa.288740 vs. NCBI nr
Match: gi|590576614|ref|XP_007013005.1| (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + KSSK +GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDLEEAET 74
          KDPNFED +E  T
Sbjct: 61 KDPNFEDPDEIVT 73

[Close]
BLAST of Cucsa.288740 vs. NCBI nr
Match: gi|313586565|gb|ADR71293.1| (hypothetical protein 17 [Hevea brasiliensis])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-23
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 1  MKKSEKSSKPSG--KSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVM 60
          MK + KSSK +   KS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYS AEIG + E +
Sbjct: 1  MKNTVKSSKTNANSKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSQAEIGLQGEAV 60

Query: 61 DVKDPNFEDLEEAETV 75
          DVKDPNFED EE ETV
Sbjct: 61 DVKDPNFEDPEETETV 76

[Close]
BLAST of Cucsa.288740 vs. NCBI nr
Match: gi|223546663|gb|EEF48161.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-23
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 1 

Query: 3  KSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKD 62
          KS KSS  + KS+ R+DRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDLEE-AETV 75
          PNFED EE AET+
Sbjct: 66 PNFEDPEETAETL 78

[Close]
BLAST of Cucsa.288740 vs. NCBI nr
Match: gi|743894075|ref|XP_011040285.1| (PREDICTED: programmed cell death protein 4-like [Populus euphratica])

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-23
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 1  MKKSEKSSKPSG-KSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MK+S KSS  +  KS+ RKDRKS TGM+GSPKKGGHGGKFTW GDGYS AEIGF+ E +D
Sbjct: 1  MKRSSKSSSSNNPKSDARKDRKSGTGMSGSPKKGGHGGKFTWVGDGYSNAEIGFEKEAVD 60

Query: 61 VKDPNFEDLEEAETV 75
          VKDPNFED EE +TV
Sbjct: 61 VKDPNFEDPEEIQTV 75

The following BLAST results are available for this feature:
BLAST of Cucsa.288740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWP4_CUCSA5.9e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575040 PE=4 SV=1[more]
A0A061GU30_THECC7.5e-2475.34Uncharacterized protein OS=Theobroma cacao GN=TCM_037765 PE=4 SV=1[more]
I3NMQ6_HEVBR7.5e-2475.00Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1[more]
B9RKG3_RICCO1.7e-2373.97Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1[more]
A0A0D2PJJ0_GOSRA8.3e-2369.62Uncharacterized protein OS=Gossypium raimondii GN=B456_004G282100 PE=4 SV=1[more]
BLAST of Cucsa.288740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211092|gb|KGN66188.1|8.5e-37100.00hypothetical protein Csa_1G575040 [Cucumis sativus][more]
gi|590576614|ref|XP_007013005.1|1.1e-2375.34Uncharacterized protein TCM_037765 [Theobroma cacao][more]
gi|313586565|gb|ADR71293.1|1.1e-2375.00hypothetical protein 17 [Hevea brasiliensis][more]
gi|223546663|gb|EEF48161.1|2.4e-2373.97conserved hypothetical protein [Ricinus communis][more]
gi|743894075|ref|XP_011040285.1|9.1e-2373.33PREDICTED: programmed cell death protein 4-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.288740.1Cucsa.288740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12626PROGRAMMED CELL DEATH 4coord: 1..70
score: 6.6
NoneNo IPR availablePANTHERPTHR12626:SF5SUBFAMILY NOT NAMEDcoord: 1..70
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.288740Cla011254Watermelon (97103) v1cgywmB531
Cucsa.288740Csa1G575040Cucumber (Chinese Long) v2cgycuB414
Cucsa.288740MELO3C015421Melon (DHL92) v3.5.1cgymeB481
Cucsa.288740ClCG03G016060Watermelon (Charleston Gray)cgywcgB505
Cucsa.288740CSPI01G27640Wild cucumber (PI 183967)cgycpiB437
Cucsa.288740CmaCh11G006550Cucurbita maxima (Rimu)cgycmaB0811
Cucsa.288740CmoCh11G006670Cucurbita moschata (Rifu)cgycmoB0805
Cucsa.288740Lsi06G002260Bottle gourd (USVL1VR-Ls)cgylsiB471
Cucsa.288740Cp4.1LG04g10460Cucurbita pepo (Zucchini)cgycpeB0768
Cucsa.288740MELO3C015421.2Melon (DHL92) v3.6.1cgymedB480
Cucsa.288740CsaV3_1G039900Cucumber (Chinese Long) v3cgycucB446
Cucsa.288740Cla97C03G066360Watermelon (97103) v2cgywmbB506
Cucsa.288740Bhi02G001620Wax gourdcgywgoB589
Cucsa.288740Carg12247Silver-seed gourdcarcgyB0043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.288740Cucurbita pepo (Zucchini)cgycpeB0765
Cucsa.288740Cucurbita pepo (Zucchini)cgycpeB0767
Cucsa.288740Cucurbita pepo (Zucchini)cgycpeB0770
Cucsa.288740Bottle gourd (USVL1VR-Ls)cgylsiB470
Cucsa.288740Bottle gourd (USVL1VR-Ls)cgylsiB472
Cucsa.288740Melon (DHL92) v3.6.1cgymedB481
Cucsa.288740Melon (DHL92) v3.6.1cgymedB482
Cucsa.288740Silver-seed gourdcarcgyB0114
Cucsa.288740Silver-seed gourdcarcgyB0646
Cucsa.288740Silver-seed gourdcarcgyB1017
Cucsa.288740Cucumber (Chinese Long) v3cgycucB447
Cucsa.288740Cucumber (Chinese Long) v3cgycucB448
Cucsa.288740Watermelon (97103) v2cgywmbB505
Cucsa.288740Watermelon (97103) v2cgywmbB507
Cucsa.288740Wax gourdcgywgoB587
Cucsa.288740Wax gourdcgywgoB588
Cucsa.288740Cucumber (Gy14) v1cgycgyB067
Cucsa.288740Cucurbita maxima (Rimu)cgycmaB0810
Cucsa.288740Cucurbita maxima (Rimu)cgycmaB0813
Cucsa.288740Cucurbita maxima (Rimu)cgycmaB0814
Cucsa.288740Cucurbita moschata (Rifu)cgycmoB0803
Cucsa.288740Cucurbita moschata (Rifu)cgycmoB0807
Cucsa.288740Cucurbita moschata (Rifu)cgycmoB0808
Cucsa.288740Wild cucumber (PI 183967)cgycpiB438
Cucsa.288740Wild cucumber (PI 183967)cgycpiB439
Cucsa.288740Cucumber (Chinese Long) v2cgycuB415
Cucsa.288740Cucumber (Chinese Long) v2cgycuB416
Cucsa.288740Melon (DHL92) v3.5.1cgymeB482
Cucsa.288740Melon (DHL92) v3.5.1cgymeB483
Cucsa.288740Watermelon (Charleston Gray)cgywcgB503
Cucsa.288740Watermelon (Charleston Gray)cgywcgB506
Cucsa.288740Watermelon (97103) v1cgywmB532
Cucsa.288740Watermelon (97103) v1cgywmB534