CsaV3_1G039900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G039900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprogrammed cell death protein 4-like
Locationchr1 : 25262882 .. 25263389 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATCAGAGAAGAGTTCGAAGCCAAGCGGGAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACGGGAATGAACGGATCACCGAAGAAAGGAGGCCACGGTGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGAGACGGTGGCGGTGGCGGTTTGATTAGGTCATTTTGGAATTTGAGATTTGTAAATAGACTTCATGAACGGTAAAAATAAAAATCCGTGGTTTTTCCATTTGTATAAAATCACGCAGCAGCATCGTTTTGTACAGTTTTCTTGATATCTATAAATTTCATTGTCGATCTTCGTTTTTTCGTGTTGAAGAAAAAATGAAAACAAGAAAACAGTGAGAAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAATTCGTCTTCAGGGATTGAAGAATGGGAAGGAAATTGGTTATTAA

mRNA sequence

ATGAAGAAATCAGAGAAGAGTTCGAAGCCAAGCGGGAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACGGGAATGAACGGATCACCGAAGAAAGGAGGCCACGGTGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGGATTGAAGAATGGGAAGGAAATTGGTTATTAA

Coding sequence (CDS)

ATGAAGAAATCAGAGAAGAGTTCGAAGCCAAGCGGGAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACGGGAATGAACGGATCACCGAAGAAAGGAGGCCACGGTGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGGATTGAAGAATGGGAAGGAAATTGGTTATTAA

Protein sequence

MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDGLKNGKEIGY
Homology
[Close]
BLAST of CsaV3_1G039900 vs. NCBI nr
Match: KGN66188.1 (hypothetical protein Csa_1G575040 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 59

[Close]
BLAST of CsaV3_1G039900 vs. NCBI nr
Match: EOY30624.1 (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MK + KSSK +GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+D
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVD 59

[Close]
BLAST of CsaV3_1G039900 vs. NCBI nr
Match: EEF48161.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 3  KSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          KS KSS  + KS+ R+DRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEIG++ +V+D
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLD 62

[Close]
BLAST of CsaV3_1G039900 vs. NCBI nr
Match: XP_022730195.1 (programmed cell death protein 4-like [Durio zibethinus])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MK + KS+K +GKS+VRKDRKS TGM+GSPKKGGHGGKFTW+GDG SPAEIG + EV+D
Sbjct: 1  MKNTGKSNKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKFTWAGDGLSPAEIGVEKEVVD 59

[Close]
BLAST of CsaV3_1G039900 vs. NCBI nr
Match: OMO82746.1 (hypothetical protein CCACVL1_11780 [Corchorus capsularis])

HSP 1 Score: 85.5 bits (210), Expect = 7.8e-14
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKS--EVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVM 60
          MK + KS K +GK   EV+KDRKS TGMNGSPKKGGHGGKFTW+GDG+SPAEIGF+ EV+
Sbjct: 1  MKNAGKSGKGNGKPSVEVKKDRKSGTGMNGSPKKGGHGGKFTWAGDGFSPAEIGFEKEVV 60

[Close]
BLAST of CsaV3_1G039900 vs. TrEMBL
Match: tr|A0A0A0LWP4|A0A0A0LWP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.0e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 59

[Close]
BLAST of CsaV3_1G039900 vs. TrEMBL
Match: tr|A0A061GU30|A0A061GU30_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MK + KSSK +GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+D
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVD 59

[Close]
BLAST of CsaV3_1G039900 vs. TrEMBL
Match: tr|B9RKG3|B9RKG3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1049300 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 3  KSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          KS KSS  + KS+ R+DRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEIG++ +V+D
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLD 62

[Close]
BLAST of CsaV3_1G039900 vs. TrEMBL
Match: tr|A0A1R3IJL6|A0A1R3IJL6_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11780 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-14
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGKS--EVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVM 60
          MK + KS K +GK   EV+KDRKS TGMNGSPKKGGHGGKFTW+GDG+SPAEIGF+ EV+
Sbjct: 1  MKNAGKSGKGNGKPSVEVKKDRKSGTGMNGSPKKGGHGGKFTWAGDGFSPAEIGFEKEVV 60

[Close]
BLAST of CsaV3_1G039900 vs. TrEMBL
Match: tr|A0A0D2SP89|A0A0D2SP89_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G078100 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 1  MKKSEKSSKPSGK-SEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MK S K+SK +GK S+VRKDRKS TGMNGSPKKGGHGGKFTW GDG SPAEIG + E++D
Sbjct: 1  MKHSGKNSKGNGKQSDVRKDRKSGTGMNGSPKKGGHGGKFTWVGDGLSPAEIGVETELVD 60

The following BLAST results are available for this feature:
BLAST of CsaV3_1G039900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66188.11.2e-22100.00hypothetical protein Csa_1G575040 [Cucumis sativus][more]
EOY30624.12.1e-1476.27Uncharacterized protein TCM_037765 [Theobroma cacao][more]
EEF48161.12.7e-1473.68conserved hypothetical protein [Ricinus communis][more]
XP_022730195.13.5e-1474.58programmed cell death protein 4-like [Durio zibethinus][more]
OMO82746.17.8e-1473.77hypothetical protein CCACVL1_11780 [Corchorus capsularis][more]
BLAST of CsaV3_1G039900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G039900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G039900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWP4|A0A0A0LWP4_CUCSA8.0e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1[more]
tr|A0A061GU30|A0A061GU30_THECC1.4e-1476.27Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1[more]
tr|B9RKG3|B9RKG3_RICCO1.8e-1473.68Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1049300 PE=4 SV=1[more]
tr|A0A1R3IJL6|A0A1R3IJL6_COCAP5.2e-1473.77Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11780 PE=4 ... [more]
tr|A0A0D2SP89|A0A0D2SP89_GOSRA3.4e-1375.00Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G078100 PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G039900.1CsaV3_1G039900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G039900CSPI01G27640Wild cucumber (PI 183967)cpicucB000
CsaV3_1G039900Cucsa.288740Cucumber (Gy14) v1cgycucB446
CsaV3_1G039900CmaCh11G006550Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G039900CmoCh11G006670Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G039900Cp4.1LG04g10460Cucurbita pepo (Zucchini)cpecucB0813
CsaV3_1G039900Carg12247Silver-seed gourdcarcucB0035
CsaV3_1G039900Cla011254Watermelon (97103) v1cucwmB025
CsaV3_1G039900MELO3C015421Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G039900ClCG03G016060Watermelon (Charleston Gray)cucwcgB050
CsaV3_1G039900Lsi06G002260Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G039900MELO3C015421.2Melon (DHL92) v3.6.1cucmedB039
CsaV3_1G039900Cla97C03G066360Watermelon (97103) v2cucwmbB041
CsaV3_1G039900Bhi02G001620Wax gourdcucwgoB102
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G039900Bottle gourd (USVL1VR-Ls)cuclsiB011
CsaV3_1G039900Bottle gourd (USVL1VR-Ls)cuclsiB092
CsaV3_1G039900Melon (DHL92) v3.5.1cucmeB068
CsaV3_1G039900Melon (DHL92) v3.5.1cucmeB074
CsaV3_1G039900Melon (DHL92) v3.6.1cucmedB065
CsaV3_1G039900Melon (DHL92) v3.6.1cucmedB068
CsaV3_1G039900Watermelon (Charleston Gray)cucwcgB010
CsaV3_1G039900Watermelon (Charleston Gray)cucwcgB094
CsaV3_1G039900Watermelon (97103) v1cucwmB039
CsaV3_1G039900Watermelon (97103) v1cucwmB083
CsaV3_1G039900Watermelon (97103) v2cucwmbB020
CsaV3_1G039900Watermelon (97103) v2cucwmbB084
CsaV3_1G039900Wax gourdcucwgoB005
CsaV3_1G039900Wax gourdcucwgoB013
CsaV3_1G039900Cucumber (Chinese Long) v3cuccucB011
CsaV3_1G039900Silver-seed gourdcarcucB0109
CsaV3_1G039900Silver-seed gourdcarcucB0604
CsaV3_1G039900Silver-seed gourdcarcucB0932
CsaV3_1G039900Cucumber (Gy14) v2cgybcucB001
CsaV3_1G039900Cucumber (Gy14) v2cgybcucB060
CsaV3_1G039900Cucumber (Gy14) v1cgycucB154
CsaV3_1G039900Cucurbita maxima (Rimu)cmacucB0059
CsaV3_1G039900Cucurbita maxima (Rimu)cmacucB0183
CsaV3_1G039900Cucurbita maxima (Rimu)cmacucB0274
CsaV3_1G039900Cucurbita maxima (Rimu)cmacucB0520
CsaV3_1G039900Cucurbita maxima (Rimu)cmacucB0920
CsaV3_1G039900Cucurbita moschata (Rifu)cmocucB0045
CsaV3_1G039900Cucurbita moschata (Rifu)cmocucB0168
CsaV3_1G039900Cucurbita moschata (Rifu)cmocucB0263
CsaV3_1G039900Cucurbita moschata (Rifu)cmocucB0507
CsaV3_1G039900Cucurbita moschata (Rifu)cmocucB0913
CsaV3_1G039900Cucurbita pepo (Zucchini)cpecucB0098
CsaV3_1G039900Cucurbita pepo (Zucchini)cpecucB0443
CsaV3_1G039900Cucurbita pepo (Zucchini)cpecucB0661
CsaV3_1G039900Cucurbita pepo (Zucchini)cpecucB0741
CsaV3_1G039900Cucurbita pepo (Zucchini)cpecucB0997
CsaV3_1G039900Wild cucumber (PI 183967)cpicucB075