MELO3C015421.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C015421.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprogrammed cell death protein 4-like
Locationchr02 : 1541785 .. 1542636 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCACACATCATCACCAACGCCCACAGATCTCCATGATCTTCACCCTCTCCCATTTATATAAAACCCTTTGTTCGATTCAATCTTCACTCGTACTCATCCACTGTTAAGAAACGAATCACCGAATCGGCGGTAAGAAGATGAAGAAATCAGAGAAGAGTTCGAAGCCAACCGGAAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACAGGAATGAACGGATCACCGAAGAAAGGAGGCCATGGCGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGTGGCGGTGGCGGTTTGATTAGGTCATTTTCGAATCTGAGATTTGTAAATAGTCTTCATGAAAACGGTAAAAATCCGTGGTTTTTCCATTTGAATAAAATCACGCAGCAGCATCGTTTTGTACAGTTTTCTTGATATTTATAAATTTCATTGTCGATCTTCGTTCTTTCGTGTTGAAGAAAAATGAAGAAGAAGAAGAAGAAGAAGAAAAAAAAAGTGGGGAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAAACTCGTCTTCAGTGATTGATGAACAGAAGATTGAAGAATGGGAAGGAAATTAGTCTTTTAATAGTTAAATTTGTCGGTCAAACTTGGGGATCACGGTGGAATTAAAACTTGAGTGGTGATGATCAAGTAAAGTTCTTGGGGTGTGCATTTTGATGTGATGCGAGTGTGTAAGCTAAAGGATAAAATCGTGCATGTCAATATTAGGATATGGAATCATTATACTAAAGCTTGAGTTATAAGTTAT

mRNA sequence

AAGCACACATCATCACCAACGCCCACAGATCTCCATGATCTTCACCCTCTCCCATTTATATAAAACCCTTTGTTCGATTCAATCTTCACTCGTACTCATCCACTGTTAAGAAACGAATCACCGAATCGGCGGTAAGAAGATGAAGAAATCAGAGAAGAGTTCGAAGCCAACCGGAAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACAGGAATGAACGGATCACCGAAGAAAGGAGGCCATGGCGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGTGGCGGTGGCGGTTTGATTAGGTCATTTTCGAATCTGAGATTTGTAAATAGTCTTCATGAAAACGAAAAATGAAGAAGAAGAAGAAGAAGAAGAAAAAAAAAGTGGGGAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAAACTCGTCTTCAGTGATTGATGAACAGAAGATTGAAGAATGGGAAGGAAATTAGTCTTTTAATAGTTAAATTTGTCGGTCAAACTTGGGGATCACGGTGGAATTAAAACTTGAGTGGTGATGATCAAGTAAAGTTCTTGGGGTGTGCATTTTGATGTGATGCGAGTGTGTAAGCTAAAGGATAAAATCGTGCATGTCAATATTAGGATATGGAATCATTATACTAAAGCTTGAGTTATAAGTTAT

Coding sequence (CDS)

ATGAAGAAATCAGAGAAGAGTTCGAAGCCAACCGGAAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACAGGAATGAACGGATCACCGAAGAAAGGAGGCCATGGCGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGTGGCGGTGGCGGTTTGA

Protein sequence

MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKDPNFEDLEEAVAVAV
Homology
[Close]
BLAST of MELO3C015421.2 vs. NCBI nr
Match: KGN66188.1 (hypothetical protein Csa_1G575040 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKP+GKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAVAVAV 77
          KDPNFEDLEEA  VAV
Sbjct: 61 KDPNFEDLEEAETVAV 76

[Close]
BLAST of MELO3C015421.2 vs. NCBI nr
Match: EOY30624.1 (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + KSSK  GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDLEEAV 73
          KDPNFED +E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]
BLAST of MELO3C015421.2 vs. NCBI nr
Match: OMO82746.1 (hypothetical protein CCACVL1_11780 [Corchorus capsularis])

HSP 1 Score: 105.9 bits (263), Expect = 6.1e-20
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKS--EVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVM 60
          MK + KS K  GK   EV+KDRKS TGMNGSPKKGGHGGKFTW+GDG+SPAEIGF+ EV+
Sbjct: 1  MKNAGKSGKGNGKPSVEVKKDRKSGTGMNGSPKKGGHGGKFTWAGDGFSPAEIGFEKEVV 60

Query: 61 DVKDPNFEDLEEAVAV 75
          DVKDPNFED +E V V
Sbjct: 61 DVKDPNFEDPDEIVTV 76

[Close]
BLAST of MELO3C015421.2 vs. NCBI nr
Match: XP_022730195.1 (programmed cell death protein 4-like [Durio zibethinus])

HSP 1 Score: 105.5 bits (262), Expect = 7.9e-20
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + KS+K  GKS+VRKDRKS TGM+GSPKKGGHGGKFTW+GDG SPAEIG + EV+DV
Sbjct: 1  MKNTGKSNKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKFTWAGDGLSPAEIGVEKEVVDV 60

Query: 61 KDPNFEDLEEAV 73
          KDPNFED +E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]
BLAST of MELO3C015421.2 vs. NCBI nr
Match: EEF48161.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 3  KSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKD 62
          KS KSS    KS+ R+DRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDLEE 71
          PNFED EE
Sbjct: 66 PNFEDPEE 73

[Close]
BLAST of MELO3C015421.2 vs. TrEMBL
Match: tr|A0A0A0LWP4|A0A0A0LWP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKP+GKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAVAVAV 77
          KDPNFEDLEEA  VAV
Sbjct: 61 KDPNFEDLEEAETVAV 76

[Close]
BLAST of MELO3C015421.2 vs. TrEMBL
Match: tr|A0A061GU30|A0A061GU30_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + KSSK  GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDLEEAV 73
          KDPNFED +E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]
BLAST of MELO3C015421.2 vs. TrEMBL
Match: tr|A0A1R3IJL6|A0A1R3IJL6_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11780 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-20
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKS--EVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVM 60
          MK + KS K  GK   EV+KDRKS TGMNGSPKKGGHGGKFTW+GDG+SPAEIGF+ EV+
Sbjct: 1  MKNAGKSGKGNGKPSVEVKKDRKSGTGMNGSPKKGGHGGKFTWAGDGFSPAEIGFEKEVV 60

Query: 61 DVKDPNFEDLEEAVAV 75
          DVKDPNFED +E V V
Sbjct: 61 DVKDPNFEDPDEIVTV 76

[Close]
BLAST of MELO3C015421.2 vs. TrEMBL
Match: tr|B9RKG3|B9RKG3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1049300 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 3  KSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKD 62
          KS KSS    KS+ R+DRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDLEE 71
          PNFED EE
Sbjct: 66 PNFEDPEE 73

[Close]
BLAST of MELO3C015421.2 vs. TrEMBL
Match: tr|A0A1U8M0Q7|A0A1U8M0Q7_GOSHI (programmed cell death protein 4-like OS=Gossypium hirsutum OX=3635 GN=LOC107932794 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-19
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 1  MKKSEKSSKPTGKS-----EVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKA 60
          MK + KSSK  GKS     + RKDRKS TGM+GSPKKGGHGGK+TW+GDG SPAEIGF+ 
Sbjct: 1  MKNTGKSSKGNGKSSSSSADARKDRKSGTGMSGSPKKGGHGGKYTWAGDGLSPAEIGFEK 60

Query: 61 EVMDVKDPNFEDLEEAVAV 75
          EV+DVKDPNFED +E V V
Sbjct: 61 EVIDVKDPNFEDADEIVTV 79

The following BLAST results are available for this feature:
BLAST of MELO3C015421.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66188.12.2e-3096.05hypothetical protein Csa_1G575040 [Cucumis sativus][more]
EOY30624.14.7e-2076.39Uncharacterized protein TCM_037765 [Theobroma cacao][more]
OMO82746.16.1e-2073.68hypothetical protein CCACVL1_11780 [Corchorus capsularis][more]
XP_022730195.17.9e-2075.00programmed cell death protein 4-like [Durio zibethinus][more]
EEF48161.11.8e-1975.00conserved hypothetical protein [Ricinus communis][more]
BLAST of MELO3C015421.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C015421.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C015421.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWP4|A0A0A0LWP4_CUCSA1.5e-3096.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1[more]
tr|A0A061GU30|A0A061GU30_THECC3.1e-2076.39Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1[more]
tr|A0A1R3IJL6|A0A1R3IJL6_COCAP4.0e-2073.68Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11780 PE=4 ... [more]
tr|B9RKG3|B9RKG3_RICCO1.2e-1975.00Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1049300 PE=4 SV=1[more]
tr|A0A1U8M0Q7|A0A1U8M0Q7_GOSHI3.4e-1969.62programmed cell death protein 4-like OS=Gossypium hirsutum OX=3635 GN=LOC1079327... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015421.2.1MELO3C015421.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C015421.2Csa1G575040Cucumber (Chinese Long) v2cumedB033
MELO3C015421.2CSPI01G27640Wild cucumber (PI 183967)cpimedB036
MELO3C015421.2Cucsa.288740Cucumber (Gy14) v1cgymedB480
MELO3C015421.2CmaCh11G006550Cucurbita maxima (Rimu)cmamedB111
MELO3C015421.2CmoCh11G006670Cucurbita moschata (Rifu)cmomedB104
MELO3C015421.2Lsi06G002260Bottle gourd (USVL1VR-Ls)lsimedB418
MELO3C015421.2Cp4.1LG04g10460Cucurbita pepo (Zucchini)cpemedB733
MELO3C015421.2Cla011254Watermelon (97103) v1medwmB262
MELO3C015421.2ClCG03G016060Watermelon (Charleston Gray)medwcgB237
MELO3C015421.2Cla97C03G066360Watermelon (97103) v2medwmbB235
MELO3C015421.2Bhi02G001620Wax gourdmedwgoB303
MELO3C015421.2Carg12247Silver-seed gourdcarmedB0037
MELO3C015421.2CsaV3_1G039900Cucumber (Chinese Long) v3cucmedB039
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015421.2Cucumber (Chinese Long) v3cucmedB109
MELO3C015421.2Cucumber (Chinese Long) v3cucmedB188
MELO3C015421.2Watermelon (97103) v2medwmbB224
MELO3C015421.2Watermelon (97103) v2medwmbB256
MELO3C015421.2Wax gourdmedwgoB271
MELO3C015421.2Wax gourdmedwgoB278
MELO3C015421.2Cucumber (Gy14) v2cgybmedB032
MELO3C015421.2Cucumber (Gy14) v2cgybmedB093
MELO3C015421.2Cucumber (Gy14) v2cgybmedB164
MELO3C015421.2Cucumber (Gy14) v1cgymedB167
MELO3C015421.2Cucurbita maxima (Rimu)cmamedB061
MELO3C015421.2Cucurbita maxima (Rimu)cmamedB165
MELO3C015421.2Cucurbita maxima (Rimu)cmamedB255
MELO3C015421.2Cucurbita maxima (Rimu)cmamedB467
MELO3C015421.2Cucurbita maxima (Rimu)cmamedB813
MELO3C015421.2Cucurbita moschata (Rifu)cmomedB053
MELO3C015421.2Cucurbita moschata (Rifu)cmomedB155
MELO3C015421.2Cucurbita moschata (Rifu)cmomedB237
MELO3C015421.2Cucurbita moschata (Rifu)cmomedB457
MELO3C015421.2Cucurbita moschata (Rifu)cmomedB810
MELO3C015421.2Cucurbita pepo (Zucchini)cpemedB105
MELO3C015421.2Cucurbita pepo (Zucchini)cpemedB393
MELO3C015421.2Cucurbita pepo (Zucchini)cpemedB601
MELO3C015421.2Cucurbita pepo (Zucchini)cpemedB671
MELO3C015421.2Cucurbita pepo (Zucchini)cpemedB884
MELO3C015421.2Wild cucumber (PI 183967)cpimedB106
MELO3C015421.2Wild cucumber (PI 183967)cpimedB184
MELO3C015421.2Cucumber (Chinese Long) v2cumedB106
MELO3C015421.2Cucumber (Chinese Long) v2cumedB184
MELO3C015421.2Melon (DHL92) v3.6.1medmedB101
MELO3C015421.2Melon (DHL92) v3.6.1medmedB106
MELO3C015421.2Bottle gourd (USVL1VR-Ls)lsimedB109
MELO3C015421.2Bottle gourd (USVL1VR-Ls)lsimedB453
MELO3C015421.2Watermelon (Charleston Gray)medwcgB224
MELO3C015421.2Watermelon (Charleston Gray)medwcgB254
MELO3C015421.2Watermelon (97103) v1medwmB265
MELO3C015421.2Watermelon (97103) v1medwmB278
MELO3C015421.2Silver-seed gourdcarmedB0098
MELO3C015421.2Silver-seed gourdcarmedB0208
MELO3C015421.2Silver-seed gourdcarmedB0580
MELO3C015421.2Silver-seed gourdcarmedB0890