ClCG03G016060.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G016060.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Programmed cell death protein 4
Location	CG_Chr03 : 31056711 .. 31057007 (+)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGTCAGAGAAGAGCTCGAAGCCAAGCGGAAAATCGGATGCGAGGAAGGATCGCAAATCGGCGACGGGGATGAACGGATCCCCGAAGAAAGGAGGTCACGGCGGCAAGTTCACTTGGGCGGGAGACGGTTACTCTCCAGCCGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCCGAATGAGCCGGTGGCGGTTTGAGTACGATCGGCGATGGCGTATTAGGTCATTTCGAGTCTGAGATTTGTAAATAGTCGTCTTGGTGGACGGTAA

mRNA sequence

ATGAAGAAGTCAGAGAAGAGCTCGAAGCCAAGCGGAAAATCGGATGCGAGGAAGGATCGCAAATCGGCGACGGGGATGAACGGATCCCCGAAGAAAGGAGGTCACGGCGGCAAGTTCACTTGGGCGGGAGACGGTTACTCTCCAGCCGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCCGAATGAGCCGGTGGCGGTCATTTCGAGTCTGAGATTTGTAAATAGTCGTCTTGGTGGACGGTAA

Coding sequence (CDS)

ATGAAGAAGTCAGAGAAGAGCTCGAAGCCAAGCGGAAAATCGGATGCGAGGAAGGATCGCAAATCGGCGACGGGGATGAACGGATCCCCGAAGAAAGGAGGTCACGGCGGCAAGTTCACTTGGGCGGGAGACGGTTACTCTCCAGCCGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCCGAATGAGCCGGTGGCGGTCATTTCGAGTCTGAGATTTGTAAATAGTCGTCTTGGTGGACGGTAA

Protein sequence

MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDVKDPNFEDPNEPVAVISSLRFVNSRLGGR

Homology

[Close]

BLAST of ClCG03G016060.1 vs. TrEMBL
Match: A0A0A0LWP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-30
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPSGKS+ RKDRKSATGMNGSPKKGGHGGKFTW+GDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPNEPVAV 75
          KDPNFED  E   V
Sbjct: 61 KDPNFEDLEEAETV 74

[Close]

BLAST of ClCG03G016060.1 vs. TrEMBL
Match: B9RKG3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-25
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 3  KSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDVKD 62
          KS KSS  + KSDAR+DRKSATGM+GSPKKGGHGGKFTWAGDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDPNE 71
          PNFEDP E
Sbjct: 66 PNFEDPEE 73

[Close]

BLAST of ClCG03G016060.1 vs. TrEMBL
Match: A0A061GU30_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MK + KSSK +GKSD RKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPNEPV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]

BLAST of ClCG03G016060.1 vs. TrEMBL
Match: A0A0D2PJJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G282100 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.4e-24
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MKKSEKSSKPSGKS-----DARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKA 60
          MK + KSSK +GKS     DARKDRKS TGM+GSPKKGGHGGK+TWAGDG SPAEIGF+ 
Sbjct: 1  MKNTGKSSKGNGKSSSSSADARKDRKSGTGMSGSPKKGGHGGKYTWAGDGLSPAEIGFEK 60

Query: 61 EVMDVKDPNFEDPNEPVAV 75
          EV+DVKDPNFED +E V V
Sbjct: 61 EVIDVKDPNFEDADEIVTV 79

[Close]

BLAST of ClCG03G016060.1 vs. TrEMBL
Match: I3NMQ6_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-23
Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = 1


Query: 1  MKKSEKSSKPSG--KSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVM 60
          MK + KSSK +   KSD RKDRKSATGM+GSPKKGGHGGKFTWAGDGYS AEIG + E +
Sbjct: 1  MKNTVKSSKTNANSKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSQAEIGLQGEAV 60

Query: 61 DVKDPNFEDPNEPVAV 75
          DVKDPNFEDP E   V
Sbjct: 61 DVKDPNFEDPEETETV 76

[Close]

BLAST of ClCG03G016060.1 vs. NCBI nr
Match: gi|700211092|gb|KGN66188.1| (hypothetical protein Csa_1G575040 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-30
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPSGKS+ RKDRKSATGMNGSPKKGGHGGKFTW+GDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPNEPVAV 75
          KDPNFED  E   V
Sbjct: 61 KDPNFEDLEEAETV 74

[Close]

BLAST of ClCG03G016060.1 vs. NCBI nr
Match: gi|223546663|gb|EEF48161.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-25
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 3  KSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDVKD 62
          KS KSS  + KSDAR+DRKSATGM+GSPKKGGHGGKFTWAGDGYSPAEIG++ +V+D KD
Sbjct: 6  KSSKSSTANSKSDARRDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEIGYQKDVLDAKD 65

Query: 63 PNFEDPNE 71
          PNFEDP E
Sbjct: 66 PNFEDPEE 73

[Close]

BLAST of ClCG03G016060.1 vs. NCBI nr
Match: gi|590576614|ref|XP_007013005.1| (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MKKSEKSSKPSGKSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMDV 60
          MK + KSSK +GKSD RKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPNEPV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]

BLAST of ClCG03G016060.1 vs. NCBI nr
Match: gi|823154661|ref|XP_012477212.1| (PREDICTED: programmed cell death protein 4-like [Gossypium raimondii])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MKKSEKSSKPSGKS-----DARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKA 60
          MK + KSSK +GKS     DARKDRKS TGM+GSPKKGGHGGK+TWAGDG SPAEIGF+ 
Sbjct: 1  MKNTGKSSKGNGKSSSSSADARKDRKSGTGMSGSPKKGGHGGKYTWAGDGLSPAEIGFEK 60

Query: 61 EVMDVKDPNFEDPNEPVAV 75
          EV+DVKDPNFED +E V V
Sbjct: 61 EVIDVKDPNFEDADEIVTV 79

[Close]

BLAST of ClCG03G016060.1 vs. NCBI nr
Match: gi|743894075|ref|XP_011040285.1| (PREDICTED: programmed cell death protein 4-like [Populus euphratica])

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MKKSEKSSKPSG-KSDARKDRKSATGMNGSPKKGGHGGKFTWAGDGYSPAEIGFKAEVMD 60
          MK+S KSS  +  KSDARKDRKS TGM+GSPKKGGHGGKFTW GDGYS AEIGF+ E +D
Sbjct: 1  MKRSSKSSSSNNPKSDARKDRKSGTGMSGSPKKGGHGGKFTWVGDGYSNAEIGFEKEAVD 60

Query: 61 VKDPNFEDPNE 71
          VKDPNFEDP E
Sbjct: 61 VKDPNFEDPEE 71

The following BLAST results are available for this feature:

BLAST of ClCG03G016060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWP4_CUCSA	1.6e-30	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G575040 PE=4 SV=1	[more]
B9RKG3_RICCO	5.8e-25	79.41	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049300 PE=4 SV=1	[more]
A0A061GU30_THECC	5.8e-25	77.78	Uncharacterized protein OS=Theobroma cacao GN=TCM_037765 PE=4 SV=1	[more]
A0A0D2PJJ0_GOSRA	8.4e-24	73.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G282100 PE=4 SV=1	[more]
I3NMQ6_HEVBR	3.2e-23	73.68	Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]

BLAST of ClCG03G016060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211092\|gb\|KGN66188.1\|	2.3e-30	89.19	hypothetical protein Csa_1G575040 [Cucumis sativus]	[more]
gi\|223546663\|gb\|EEF48161.1\|	8.3e-25	79.41	conserved hypothetical protein [Ricinus communis]	[more]
gi\|590576614\|ref\|XP_007013005.1\|	8.3e-25	77.78	Uncharacterized protein TCM_037765 [Theobroma cacao]	[more]
gi\|823154661\|ref\|XP_012477212.1\|	1.2e-23	73.42	PREDICTED: programmed cell death protein 4-like [Gossypium raimondii]	[more]
gi\|743894075\|ref\|XP_011040285.1\|	2.7e-23	77.46	PREDICTED: programmed cell death protein 4-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G016060	ClCG03G016060	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G016060.1	ClCG03G016060.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G016060.1.cds1	ClCG03G016060.1.cds1	CDS
ClCG03G016060.1.cds2	ClCG03G016060.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12626	PROGRAMMED CELL DEATH 4	coord: 1..70 score: 9.9
None	No IPR available	PANTHER	PTHR12626:SF5	SUBFAMILY NOT NAMED	coord: 1..70 score: 9.9