Carg25816 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25816
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Cucurbita_argyrosperma_scaffold_332 : 80050 .. 80313 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTGTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

mRNA sequence

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTGTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Coding sequence (CDS)

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTGTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Protein sequence

MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS

Homology

[Close]

BLAST of Carg25816 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_2G101100 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 4.8e-29
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          M FSIHRVL+VLLMCVVALLAV+ DQACA+RSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of Carg25816 vs. NCBI nr
Match: CAN64769.1 (hypothetical protein VITISV_010312 [Vitis vinifera])

HSP 1 Score: 75.9 bits (185), Expect = 7.7e-11
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   +RSIDL LR S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLI--CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          + N + N+ P N KFD NQSSKRRVRRGSDPIHN+S
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of Carg25816 vs. NCBI nr
Match: ESR51929.1 (hypothetical protein CICLE_v10033178mg [Citrus clementina] >KDO82924.1 hypothetical protein CISIN_1g034426mg [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRH---------ILVEDSRVE 60
          MVF   RVL +LL+C+  LL+VQPD+   +RSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVL-ILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of Carg25816 vs. NCBI nr
Match: PQQ19557.1 (hypothetical protein Pyn_07373 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 54/98 (55.10%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSR---HILV-------EDSRV 60
          MVFS H V  VLL CV   L VQPD+  A+ SI LALR ++   H +V       E + +
Sbjct: 1  MVFSSHGVF-VLLFCVGLFLVVQPDEVSALTSIGLALRENQGQYHGIVPRHQRTLEAATM 60

Query: 61 EEKNM-KRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          EE +  K+NS   NS FDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]

BLAST of Carg25816 vs. NCBI nr
Match: ONI30813.1 (hypothetical protein PRUPE_1G274800 [Prunus persica])

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 52/98 (53.06%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSS---------RH--ILVEDSR 60
          MVFS H V  VLL C+   L VQPD+  A+ SI LALR +         RH   L   + 
Sbjct: 1  MVFSSHGVF-VLLFCIGLFLVVQPDEVSALTSIGLALRENQDQYHGIFPRHQRTLKAATM 60

Query: 61 VEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
           E    K+NS   NS FDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]

BLAST of Carg25816 vs. TrEMBL
Match: tr|A0A0A0LHH0|A0A0A0LHH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          M FSIHRVL+VLLMCVVALLAV+ DQACA+RSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of Carg25816 vs. TrEMBL
Match: tr|A5APJ5|A5APJ5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   +RSIDL LR S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLI--CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          + N + N+ P N KFD NQSSKRRVRRGSDPIHN+S
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of Carg25816 vs. TrEMBL
Match: tr|V4VH78|V4VH78_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRH---------ILVEDSRVE 60
          MVF   RVL +LL+C+  LL+VQPD+   +RSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVL-ILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of Carg25816 vs. TrEMBL
Match: tr|A0A067GTG0|A0A067GTG0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRH---------ILVEDSRVE 60
          MVF   RVL +LL+C+  LL+VQPD+   +RSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVL-ILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of Carg25816 vs. TrEMBL
Match: tr|M5XJX5|M5XJX5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G274800 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 52/98 (53.06%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSS---------RH--ILVEDSR 60
          MVFS H V  VLL C+   L VQPD+  A+ SI LALR +         RH   L   + 
Sbjct: 1  MVFSSHGVF-VLLFCIGLFLVVQPDEVSALTSIGLALRENQDQYHGIFPRHQRTLKAATM 60

Query: 61 VEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
           E    K+NS   NS FDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

The following BLAST results are available for this feature:

BLAST of Carg25816 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61380.1	4.8e-29	86.21	hypothetical protein Csa_2G101100 [Cucumis sativus]	[more]
CAN64769.1	7.7e-11	53.13	hypothetical protein VITISV_010312 [Vitis vinifera]	[more]
ESR51929.1	2.9e-10	48.96	hypothetical protein CICLE_v10033178mg [Citrus clementina] >KDO82924.1 hypotheti...	[more]
PQQ19557.1	6.5e-10	55.10	hypothetical protein Pyn_07373 [Prunus yedoensis var. nudiflora]	[more]
ONI30813.1	1.9e-09	53.06	hypothetical protein PRUPE_1G274800 [Prunus persica]	[more]

BLAST of Carg25816 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25816 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25816 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHH0\|A0A0A0LHH0_CUCSA	3.2e-29	86.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
tr\|A5APJ5\|A5APJ5_VITVI	5.1e-11	53.13	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1	[more]
tr\|V4VH78\|V4VH78_9ROSI	1.9e-10	48.96	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ...	[more]
tr\|A0A067GTG0\|A0A067GTG0_CITSI	1.9e-10	48.96	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1	[more]
tr\|M5XJX5\|M5XJX5_PRUPE	1.3e-09	53.06	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G274800 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038821	CLE45-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25816-RA	Carg25816-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	FAMILY NOT NAMED	coord: 1..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25816	Csa2G101100	Cucumber (Chinese Long) v2	carcuB1082
Carg25816	CSPI02G08290	Wild cucumber (PI 183967)	carcpiB1104
Carg25816	CmaCh05G008590	Cucurbita maxima (Rimu)	carcmaB1477
Carg25816	CmoCh05G008650	Cucurbita moschata (Rifu)	carcmoB1434
Carg25816	Cp4.1LG11g07200	Cucurbita pepo (Zucchini)	carcpeB1486
Carg25816	CsGy2G008580	Cucumber (Gy14) v2	carcgybB1050
Carg25816	CsaV3_2G010680	Cucumber (Chinese Long) v3	carcucB1115

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25816	Carg20420	Silver-seed gourd	carcarB581

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25816	Cucumber (Gy14) v1	carcgyB1186
Carg25816	Cucurbita moschata (Rifu)	carcmoB1433
Carg25816	Cucurbita pepo (Zucchini)	carcpeB1485
Carg25816	Cucurbita pepo (Zucchini)	carcpeB1487
Carg25816	Bottle gourd (USVL1VR-Ls)	carlsiB975
Carg25816	Melon (DHL92) v3.5.1	carmeB1037
Carg25816	Melon (DHL92) v3.6.1	carmedB1051
Carg25816	Watermelon (97103) v2	carwmbB1126
Carg25816	Wax gourd	carwgoB1255