CmoCh05G008650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Cmo_Chr05 : 5649853 .. 5650113 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGCACTTTTAGCTGTTCAACCAGATCAGACTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACAAGGTTCGGATCCTATCCACAACAAGTCTTAG

mRNA sequence

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGCACTTTTAGCTGTTCAACCAGATCAGACTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACAAGGTTCGGATCCTATCCACAACAAGTCTTAG

Coding sequence (CDS)

ATGGTTTTCAGTATACACAGAGTACTGGTTGTCCTCCTCATGTGTGTTGCACTTTTAGCTGTTCAACCAGATCAGACTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACAAGGTTCGGATCCTATCCACAACAAGTCTTAG

Homology

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BLAST of CmoCh05G008650 vs. TrEMBL
Match: A0A0A0LHH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-27
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCV-ALLAVQPDQTCALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          M FSIHRVL+VLLMCV ALLAV+ DQ CALRSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNSKFDPNQSSKRRVRQGSDPIHNKS 87
          PRN+KFDPN+SSKRRVR+GSDPIHN+S
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

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BLAST of CmoCh05G008650 vs. TrEMBL
Match: A5APJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-13
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLALRSSR--HILVEDSR-------VEE 60
          MVFS  RVLV L+ C+ +LAV+PD+   LRSIDL LR S+  H+L   ++       VE+
Sbjct: 1  MVFSAQRVLVFLI-CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVED 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N + N+ P N KFD NQSSKRRVR+GSDPIHN+S
Sbjct: 61 LNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

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BLAST of CmoCh05G008650 vs. TrEMBL
Match: W9QB86_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001442 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-10
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLAL---RSSRHILVEDSR------VEE 60
          MVFS HRVL+ LL+C+ LL+VQPD+   LR+ID AL   + +  IL++  R      ++ 
Sbjct: 1  MVFSTHRVLI-LLICIGLLSVQPDKVSGLRNIDTALGEHKENNQILLQIRRFLKVVNMDG 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N K+ S  +N KFDP++SSKR+V +GSDPIHN+S
Sbjct: 61 MNTKKRSSSQNDKFDPDRSSKRKVGRGSDPIHNRS 94

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BLAST of CmoCh05G008650 vs. TrEMBL
Match: A0A067GTG0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLALRSSRHI---------LVEDSRVEE 60
          MVF   RVL++L+    LL+VQPD+   LRSIDL LR ++H          +++++ +  
Sbjct: 1  MVFFARRVLILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMVG 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N ++ S   ++KFDPNQSSKRRVR+GSDPIHN+S
Sbjct: 61 MNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

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BLAST of CmoCh05G008650 vs. TrEMBL
Match: V4VH78_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLALRSSRHI---------LVEDSRVEE 60
          MVF   RVL++L+    LL+VQPD+   LRSIDL LR ++H          +++++ +  
Sbjct: 1  MVFFARRVLILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMVG 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N ++ S   ++KFDPNQSSKRRVR+GSDPIHN+S
Sbjct: 61 MNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CmoCh05G008650 vs. NCBI nr
Match: gi|700206261|gb|KGN61380.1| (hypothetical protein Csa_2G101100 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCV-ALLAVQPDQTCALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          M FSIHRVL+VLLMCV ALLAV+ DQ CALRSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNSKFDPNQSSKRRVRQGSDPIHNKS 87
          PRN+KFDPN+SSKRRVR+GSDPIHN+S
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CmoCh05G008650 vs. NCBI nr
Match: gi|147770466|emb|CAN64769.1| (hypothetical protein VITISV_010312 [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLALRSSR--HILVEDSR-------VEE 60
          MVFS  RVLV L+ C+ +LAV+PD+   LRSIDL LR S+  H+L   ++       VE+
Sbjct: 1  MVFSAQRVLVFLI-CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVED 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N + N+ P N KFD NQSSKRRVR+GSDPIHN+S
Sbjct: 61 LNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of CmoCh05G008650 vs. NCBI nr
Match: gi|1009154299|ref|XP_015895094.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 45 [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLALRSSRH----ILVEDSRV------E 60
          MV + HRVL+ LL+C+  L VQPD+   LRSI +A+R ++     +L ++ R+      E
Sbjct: 1  MVLTSHRVLI-LLICIGFLVVQPDKVSGLRSIGIAIRETKKDHDLLLSKNQRILKAVNME 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
          E N  +NS   + KFDPNQSSKR+VR+G+DPIHN+S
Sbjct: 61 EINTTKNSKTSDEKFDPNQSSKRKVRRGADPIHNRS 95

[Close]

BLAST of CmoCh05G008650 vs. NCBI nr
Match: gi|703061718|ref|XP_010086550.1| (hypothetical protein L484_001442 [Morus notabilis])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLAL---RSSRHILVEDSR------VEE 60
          MVFS HRVL+ LL+C+ LL+VQPD+   LR+ID AL   + +  IL++  R      ++ 
Sbjct: 1  MVFSTHRVLI-LLICIGLLSVQPDKVSGLRNIDTALGEHKENNQILLQIRRFLKVVNMDG 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N K+ S  +N KFDP++SSKR+V +GSDPIHN+S
Sbjct: 61 MNTKKRSSSQNDKFDPDRSSKRKVGRGSDPIHNRS 94

[Close]

BLAST of CmoCh05G008650 vs. NCBI nr
Match: gi|567892337|ref|XP_006438689.1| (hypothetical protein CICLE_v10033178mg [Citrus clementina])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 1  MVFSIHRVLVVLLMCVALLAVQPDQTCALRSIDLALRSSRHI---------LVEDSRVEE 60
          MVF   RVL++L+    LL+VQPD+   LRSIDL LR ++H          +++++ +  
Sbjct: 1  MVFFARRVLILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMVG 60

Query: 61 KNMKRNSLPRNSKFDPNQSSKRRVRQGSDPIHNKS 87
           N ++ S   ++KFDPNQSSKRRVR+GSDPIHN+S
Sbjct: 61 MNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

The following BLAST results are available for this feature:

BLAST of CmoCh05G008650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G008650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHH0_CUCSA	1.6e-27	83.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101100 PE=4 SV=1	[more]
A5APJ5_VITVI	8.5e-13	54.74	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010312 PE=4 SV=1	[more]
W9QB86_9ROSA	1.0e-10	49.47	Uncharacterized protein OS=Morus notabilis GN=L484_001442 PE=4 SV=1	[more]
A0A067GTG0_CITSI	1.4e-10	47.37	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034426mg PE=4 SV=1	[more]
V4VH78_9ROSI	1.4e-10	47.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033178mg PE=4 SV=1	[more]

BLAST of CmoCh05G008650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh05G008650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206261\|gb\|KGN61380.1\|	2.3e-27	83.91	hypothetical protein Csa_2G101100 [Cucumis sativus]	[more]
gi\|147770466\|emb\|CAN64769.1\|	1.2e-12	54.74	hypothetical protein VITISV_010312 [Vitis vinifera]	[more]
gi\|1009154299\|ref\|XP_015895094.1\|	1.5e-10	47.92	PREDICTED: CLAVATA3/ESR (CLE)-related protein 45 [Ziziphus jujuba]	[more]
gi\|703061718\|ref\|XP_010086550.1\|	1.5e-10	49.47	hypothetical protein L484_001442 [Morus notabilis]	[more]
gi\|567892337\|ref\|XP_006438689.1\|	1.9e-10	47.37	hypothetical protein CICLE_v10033178mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008650.1	CmoCh05G008650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36726	FAMILY NOT NAMED	coord: 1..86 score: 4.8
None	No IPR available	PANTHER	PTHR36726:SF1	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..86 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G008650	CmaCh05G008590	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G008650	Csa2G101100	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G008650	CSPI02G08290	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G008650	Cp4.1LG11g07200	Cucurbita pepo (Zucchini)	cmocpeB722
CmoCh05G008650	CsaV3_2G010680	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G008650	Cla97C11G216260	Watermelon (97103) v2	cmowmbB780
CmoCh05G008650	Bhi06G000766	Wax gourd	cmowgoB0930
CmoCh05G008650	CsGy2G008580	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G008650	Carg25816	Silver-seed gourd	carcmoB1434

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G008650	Cucurbita pepo (Zucchini)	cmocpeB725
CmoCh05G008650	Cucurbita pepo (Zucchini)	cmocpeB732
CmoCh05G008650	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G008650	Melon (DHL92) v3.6.1	cmomedB823
CmoCh05G008650	Silver-seed gourd	carcmoB0956
CmoCh05G008650	Watermelon (97103) v2	cmowmbB784
CmoCh05G008650	Cucurbita moschata (Rifu)	cmocmoB372
CmoCh05G008650	Cucumber (Gy14) v1	cgycmoB0554
CmoCh05G008650	Cucurbita maxima (Rimu)	cmacmoB485
CmoCh05G008650	Cucurbita maxima (Rimu)	cmacmoB789
CmoCh05G008650	Melon (DHL92) v3.5.1	cmomeB726
CmoCh05G008650	Watermelon (Charleston Gray)	cmowcgB697
CmoCh05G008650	Watermelon (97103) v1	cmowmB762