CsaV3_2G010680 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010680
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	chr2 : 7844854 .. 7846926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTCTGCTTTATGCTTTAAAGTCACTTCCAAAACCAATGACAGATAAATAACAGCCTTGTGTGTCTACTACAGGAATCAAACTACCACAAAAACAAAACAGAATTAAGAGAAAAAAAAAAAAAAAAAAAGAGGGAGAAAAAAAAACCAACATATCTATCCTCTTTCTCCCTCTTTTTGCTTCATTGTAGAAGCCATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAAACAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACAGTGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAGTTCATTTCTGTTGTTTGCTGAAGGAACCCACAAATTTGATATCAACAGAAGCAAGGAAACAGAGAAAGGTTCAGGCCACAGCAGAGGAAGAAACACCAGCAAGAATCTGGTTTCTCCAATGGTTGGTTGGTTGGTTTGATCATTTATCCCCATTACATAACGATTCCGTTTTTAGTTTTCTGTTTTTGAAAATTATGCTAGAATTTTCACAATTTCTTTAGTATATTTTGCACATTCCTTAAAAACACATTTGAATTCTAAGCCAAATTTAAAAACAAACCCATATATATAAAAAAAAGTTTTGAAATTTGGCTTAGACTTTAAATATGTTTTTGAAGAGCGGTTAACAAAACAAAGAACTACCTCAGAGAAAGTGGTATTTATAAGCTTACTTTAAAAAACAGAAAGTTAAAAACAAAATTGTTATCAAATGGGTTTAATGTTTTGTTTTCAGAGTTCTTGTTCCTCATATGTGTATAGTAAAGCTTCCTGGAGGAAGTCCAACACAATGACCTCCACACTGAAACTAGAAGTGAATTCATAAACTTAGCAGTAAAAAGATCACAGAGATGAATGACAAAAAGAATCCAACTACTTGACAAAGTAACATTGAATTTCTTTTGAAAAGATGATTACTTTGAATCTGTTTGGAACTTCAAGTTCAAGTTTCATGTTGCAACAAGATTCTTTTTTAATCCATCAGCTAGATTTTAACAAAGCTTTTAATTAATTTAGTTCATCTTCTACGGATACCATTTTGGGAAATTTTATAGAAGATGTCTCCTCTCTTCCCCAGAAATTGCACAGTTTCACGCAAATCTGCACACAATCAATTACCCATCAGCTCACTGAGGAGCCTTGTGAATGTGTACAACTCAACTTGTGGCCTTGCCTTTTGCTCTTTAGCTTTTTCTTTATATATTGTGGGTTTCAAAGCTTTGAGATGAACATAAGGAAGTGTAATGAGTAAAGCATTTTGATGTTATGAGAAACTGTGAACAAGAGTCTAAAAGTGTAATGATTAAAGCATTTTGATGTTCTGAGGAATTGTGAAGAAGAGTGTATTCATTGTTGTTTGTGTCAAACAAGAAGAAAAATCTTGCACATCATAATCATGGTTGACAAAGTACTGATAATTCTGAGTGTCTGACTGAAACTTGGAGATATAGAAAAATGCATGAACAAGTTCAAGTGAAAAAAAGAAAAGAAATATTTGCGTGTCATCGAGATGGGGATTGAACATACGAATCTCAAGAACATCTGATCCAAAACAGTACCAGTAACAAAGAGTATTTCGTACCTGAACATCTCGGCATCGAAATGGGGACTGGGAATCCACAAACTCAAGTGCCGAGGTTGGCTAACTTCCAATTAAGGAAACGCCAGTTTGTGCGGCCTATCATTACATTGCCCTTTTGCTCGTTCTAATTTTTAATTAATAGGTTCATTTTTGGCTAATTTGCATACATATAATTTTTAAAAAATGTTGTTATATATTTAATTATTCTAAAAATATAATTATTATATTTACCATTATCGTTATGCAAACCATTTTGCATATACTATATTTTATAATATTTTCATTTGGCTATTTACAACAAATTATTGAAATA

mRNA sequence

ATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAAACAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACAGTGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAG

Coding sequence (CDS)

ATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAAACAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACAGTGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAG

Protein sequence

MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS

Homology

[Close]

BLAST of CsaV3_2G010680 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_2G101100 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 4.9e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PRNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CsaV3_2G010680 vs. NCBI nr
Match: ESR51929.1 (hypothetical protein CICLE_v10033178mg [Citrus clementina] >KDO82924.1 hypothetical protein CISIN_1g034426mg [Citrus sinensis])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRH---------ILVEDSTVE 60
          M F   RVLI LL+C+  LL+V+ D+   LRSIDL LR ++H          +++++T+ 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CsaV3_2G010680 vs. NCBI nr
Match: CAN64769.1 (hypothetical protein VITISV_010312 [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSR--HILVEDS-------TVE 60
          M FS  RVL+ L+   + +LAV+ D+   LRSIDL LR S+  H+L   +        VE
Sbjct: 1  MVFSAQRVLVFLI--CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          +LN + N+ P N KFD N+SSKRRVRRGSDPIHNRS
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of CsaV3_2G010680 vs. NCBI nr
Match: PQQ19557.1 (hypothetical protein Pyn_07373 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 51/98 (52.04%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALR----------PSRHILVEDSTV 60
          M FS H V  VLL CV   L V+ D+  AL SI LALR          P     +E +T+
Sbjct: 1  MVFSSHGV-FVLLFCVGLFLVVQPDEVSALTSIGLALRENQGQYHGIVPRHQRTLEAATM 60

Query: 61 EELNM-KRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          EE++  K+NS   N+ FDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]

BLAST of CsaV3_2G010680 vs. NCBI nr
Match: PON33456.1 (CLAVATA3/ESR (CLE)-related protein [Parasponia andersonii])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPS----------RHILVEDSTV 60
          MGF+  RVLI LL+C +  L+ + D+   LRSID+ALR            R  L      
Sbjct: 1  MGFATQRVLI-LLIC-IGFLSFQPDKVSGLRSIDIALREQKEESHLFLQIRRFLKVVKEE 60

Query: 61 EELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNR 87
          E+LN +  S  +NNKFDPN+SSKR+VRRGSDPIHNR
Sbjct: 61 EKLNSETKSASQNNKFDPNQSSKRKVRRGSDPIHNR 94

[Close]

BLAST of CsaV3_2G010680 vs. TrEMBL
Match: tr|A0A0A0LHH0|A0A0A0LHH0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PRNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CsaV3_2G010680 vs. TrEMBL
Match: tr|V4VH78|V4VH78_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRH---------ILVEDSTVE 60
          M F   RVLI LL+C+  LL+V+ D+   LRSIDL LR ++H          +++++T+ 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CsaV3_2G010680 vs. TrEMBL
Match: tr|A0A067GTG0|A0A067GTG0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRH---------ILVEDSTVE 60
          M F   RVLI LL+C+  LL+V+ D+   LRSIDL LR ++H          +++++T+ 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CsaV3_2G010680 vs. TrEMBL
Match: tr|A5APJ5|A5APJ5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSR--HILVEDS-------TVE 60
          M FS  RVL+ L+   + +LAV+ D+   LRSIDL LR S+  H+L   +        VE
Sbjct: 1  MVFSAQRVLVFLI--CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          +LN + N+ P N KFD N+SSKRRVRRGSDPIHNRS
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of CsaV3_2G010680 vs. TrEMBL
Match: tr|A0A2P5AA93|A0A2P5AA93_PARAD (CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_352570 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-09
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPS----------RHILVEDSTV 60
          MGF+  RVLI LL+C +  L+ + D+   LRSID+ALR            R  L      
Sbjct: 1  MGFATQRVLI-LLIC-IGFLSFQPDKVSGLRSIDIALREQKEESHLFLQIRRFLKVVKEE 60

Query: 61 EELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNR 87
          E+LN +  S  +NNKFDPN+SSKR+VRRGSDPIHNR
Sbjct: 61 EKLNSETKSASQNNKFDPNQSSKRKVRRGSDPIHNR 94

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61380.1	4.9e-37	100.00	hypothetical protein Csa_2G101100 [Cucumis sativus]	[more]
ESR51929.1	1.3e-10	50.00	hypothetical protein CICLE_v10033178mg [Citrus clementina] >KDO82924.1 hypotheti...	[more]
CAN64769.1	3.0e-10	52.08	hypothetical protein VITISV_010312 [Vitis vinifera]	[more]
PQQ19557.1	1.5e-09	52.04	hypothetical protein Pyn_07373 [Prunus yedoensis var. nudiflora]	[more]
PON33456.1	2.5e-09	50.00	CLAVATA3/ESR (CLE)-related protein [Parasponia andersonii]	[more]

BLAST of CsaV3_2G010680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHH0\|A0A0A0LHH0_CUCSA	3.2e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
tr\|V4VH78\|V4VH78_9ROSI	8.8e-11	50.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ...	[more]
tr\|A0A067GTG0\|A0A067GTG0_CITSI	8.8e-11	50.00	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1	[more]
tr\|A5APJ5\|A5APJ5_VITVI	2.0e-10	52.08	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1	[more]
tr\|A0A2P5AA93\|A0A2P5AA93_PARAD	1.7e-09	50.00	CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038821	CLE45-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G010680.1	CsaV3_2G010680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	FAMILY NOT NAMED	coord: 1..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G010680	CSPI02G08290	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G010680	CmaCh05G008590	Cucurbita maxima (Rimu)	cmacucB0936
CsaV3_2G010680	CmoCh05G008650	Cucurbita moschata (Rifu)	cmocucB0920
CsaV3_2G010680	Cp4.1LG11g07200	Cucurbita pepo (Zucchini)	cpecucB0118
CsaV3_2G010680	CsGy2G008580	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G010680	Carg20420	Silver-seed gourd	carcucB0737
CsaV3_2G010680	Carg25816	Silver-seed gourd	carcucB1115
CsaV3_2G010680	ClCG11G009950	Watermelon (Charleston Gray)	cucwcgB115
CsaV3_2G010680	Cla97C11G216260	Watermelon (97103) v2	cucwmbB110
CsaV3_2G010680	Bhi06G000766	Wax gourd	cucwgoB147

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G010680	Cucurbita maxima (Rimu)	cmacucB0532
CsaV3_2G010680	Cucurbita moschata (Rifu)	cmocucB0518
CsaV3_2G010680	Cucurbita pepo (Zucchini)	cpecucB0672
CsaV3_2G010680	Bottle gourd (USVL1VR-Ls)	cuclsiB108
CsaV3_2G010680	Melon (DHL92) v3.5.1	cucmeB144
CsaV3_2G010680	Melon (DHL92) v3.6.1	cucmedB137
CsaV3_2G010680	Watermelon (97103) v1	cucwmB169
CsaV3_2G010680	Watermelon (97103) v1	cucwmB177
CsaV3_2G010680	Watermelon (97103) v2	cucwmbB114