Cp4.1LG11g07200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g07200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionClavata3/esr-related 45, putative
LocationCp4.1LG11 : 5108862 .. 5109125 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTCAGTATACACAGAGTACTTGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

mRNA sequence

ATGGTTTTCAGTATACACAGAGTACTTGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Coding sequence (CDS)

ATGGTTTTCAGTATACACAGAGTACTTGTTGTCCTCCTCATGTGTGTTGTTGCACTTTTAGCTGTTCAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGATCTAGTCGCCACATTCTTGTTGAAGACTCGAGGGTGGAGGAAAAGAACATGAAAAGGAATTCACTACCACGAAACAGCAAGTTTGATCCAAATCAATCAAGCAAAAGACGGGTTCGACGAGGTTCGGATCCTATCCACAACAAGTCTTAG

Protein sequence

MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS
Homology
[Close]
BLAST of Cp4.1LG11g07200 vs. TrEMBL
Match: A0A0A0LHH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.7e-30
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          M FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]
BLAST of Cp4.1LG11g07200 vs. TrEMBL
Match: A5APJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   LRSIDL LR S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLIC--IGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          + N + N+ P N KFD NQSSKRRVRRGSDPIHN+S
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]
BLAST of Cp4.1LG11g07200 vs. TrEMBL
Match: A0A067GTG0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-11
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHI---------LVEDSRVE 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]
BLAST of Cp4.1LG11g07200 vs. TrEMBL
Match: V4VH78_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-11
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHI---------LVEDSRVE 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]
BLAST of Cp4.1LG11g07200 vs. TrEMBL
Match: M5XJX5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026459mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-10
Identity = 53/98 (54.08%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSS---------RH--ILVEDSR 60
          MVFS H V V LL C+   L VQPD+  AL SI LALR +         RH   L   + 
Sbjct: 1  MVFSSHGVFV-LLFCIGLFLVVQPDEVSALTSIGLALRENQDQYHGIFPRHQRTLKAATM 60

Query: 61 VEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
           E    K+NS   NS FDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]
BLAST of Cp4.1LG11g07200 vs. NCBI nr
Match: gi|700206261|gb|KGN61380.1| (hypothetical protein Csa_2G101100 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60
          M FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]
BLAST of Cp4.1LG11g07200 vs. NCBI nr
Match: gi|147770466|emb|CAN64769.1| (hypothetical protein VITISV_010312 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   LRSIDL LR S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLIC--IGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
          + N + N+ P N KFD NQSSKRRVRRGSDPIHN+S
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]
BLAST of Cp4.1LG11g07200 vs. NCBI nr
Match: gi|567892337|ref|XP_006438689.1| (hypothetical protein CICLE_v10033178mg [Citrus clementina])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-11
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSSRHI---------LVEDSRVE 60
          MVF   RVL+ LL+C+  LL+VQPD+   LRSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N ++ S   ++KFDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]
BLAST of Cp4.1LG11g07200 vs. NCBI nr
Match: gi|596248901|ref|XP_007224632.1| (hypothetical protein PRUPE_ppa026459mg [Prunus persica])

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 53/98 (54.08%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLALRSS---------RH--ILVEDSR 60
          MVFS H V V LL C+   L VQPD+  AL SI LALR +         RH   L   + 
Sbjct: 1  MVFSSHGVFV-LLFCIGLFLVVQPDEVSALTSIGLALRENQDQYHGIFPRHQRTLKAATM 60

Query: 61 VEEKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
           E    K+NS   NS FDPNQSSKRRVRRGSDPIHN+S
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]
BLAST of Cp4.1LG11g07200 vs. NCBI nr
Match: gi|703061718|ref|XP_010086550.1| (hypothetical protein L484_001442 [Morus notabilis])

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1 

Query: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAL---RSSRHILVEDSR------VE 60
          MVFS HRVL+ LL+C+  LL+VQPD+   LR+ID AL   + +  IL++  R      ++
Sbjct: 1  MVFSTHRVLI-LLICI-GLLSVQPDKVSGLRNIDTALGEHKENNQILLQIRRFLKVVNMD 60

Query: 61 EKNMKRNSLPRNSKFDPNQSSKRRVRRGSDPIHNKS 88
            N K+ S  +N KFDP++SSKR+V RGSDPIHN+S
Sbjct: 61 GMNTKKRSSSQNDKFDPDRSSKRKVGRGSDPIHNRS 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g07200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHH0_CUCSA7.7e-3087.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G101100 PE=4 SV=1[more]
A5APJ5_VITVI1.2e-1154.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010312 PE=4 SV=1[more]
A0A067GTG0_CITSI4.7e-1150.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034426mg PE=4 SV=1[more]
V4VH78_9ROSI4.7e-1150.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033178mg PE=4 SV=1[more]
M5XJX5_PRUPE3.1e-1054.08Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026459mg PE=4 SV=1[more]
BLAST of Cp4.1LG11g07200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g07200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206261|gb|KGN61380.1|1.1e-2987.36hypothetical protein Csa_2G101100 [Cucumis sativus][more]
gi|147770466|emb|CAN64769.1|1.8e-1154.17hypothetical protein VITISV_010312 [Vitis vinifera][more]
gi|567892337|ref|XP_006438689.1|6.8e-1150.00hypothetical protein CICLE_v10033178mg [Citrus clementina][more]
gi|596248901|ref|XP_007224632.1|4.4e-1054.08hypothetical protein PRUPE_ppa026459mg [Prunus persica][more]
gi|703061718|ref|XP_010086550.1|2.2e-0950.00hypothetical protein L484_001442 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07200.1Cp4.1LG11g07200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g07200CmaCh05G008590Cucurbita maxima (Rimu)cmacpeB768
Cp4.1LG11g07200CmoCh05G008650Cucurbita moschata (Rifu)cmocpeB722
Cp4.1LG11g07200Csa2G101100Cucumber (Chinese Long) v2cpecuB107
Cp4.1LG11g07200ClCG11G009950Watermelon (Charleston Gray)cpewcgB098
Cp4.1LG11g07200CSPI02G08290Wild cucumber (PI 183967)cpecpiB103
Cp4.1LG11g07200CsaV3_2G010680Cucumber (Chinese Long) v3cpecucB0118
Cp4.1LG11g07200Bhi06G000766Wax gourdcpewgoB0117
Cp4.1LG11g07200CsGy2G008580Cucumber (Gy14) v2cgybcpeB171
Cp4.1LG11g07200Carg25816Silver-seed gourdcarcpeB1486
Cp4.1LG11g07200Carg20420Silver-seed gourdcarcpeB0980
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g07200Cp4.1LG02g12270Cucurbita pepo (Zucchini)cpecpeB126
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g07200Cucumber (Gy14) v1cgycpeB0533
Cp4.1LG11g07200Cucurbita maxima (Rimu)cmacpeB462
Cp4.1LG11g07200Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g07200Cucurbita moschata (Rifu)cmocpeB422
Cp4.1LG11g07200Cucurbita moschata (Rifu)cmocpeB725
Cp4.1LG11g07200Cucumber (Chinese Long) v2cpecuB098
Cp4.1LG11g07200Bottle gourd (USVL1VR-Ls)cpelsiB077
Cp4.1LG11g07200Melon (DHL92) v3.5.1cpemeB101
Cp4.1LG11g07200Melon (DHL92) v3.6.1cpemedB125